RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 SPDYE3A6NKU9 549 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 TBC1D9Q6ZT07 1266 aa16.41■□□□□ 0.22
COLCA1-204ENST00000540738 IVNS1ABPQ9Y6Y0 642 aa16.41■□□□□ 0.22
COLCA1-204ENST00000540738 EAPPQ56P03 285 aaPredicted RBP16.41■□□□□ 0.22
COLCA1-204ENST00000540738 BRDTQ58F21 947 aaPredicted RBP16.41■□□□□ 0.22
COLCA1-204ENST00000540738 SEPT11Q9NVA2 429 aaKnown RBP16.41■□□□□ 0.22
COLCA1-204ENST00000540738 JAG2Q9Y219 1238 aa16.41■□□□□ 0.22
COLCA1-204ENST00000540738 NEBLO76041 1014 aa16.41■□□□□ 0.22
COLCA1-204ENST00000540738 IL6STP40189 918 aaPredicted RBP16.41■□□□□ 0.22
COLCA1-204ENST00000540738 EIF5P55010 431 aaKnown RBP16.41■□□□□ 0.22
COLCA1-204ENST00000540738 CALML3P27482 149 aa16.41■□□□□ 0.22
COLCA1-204ENST00000540738 NAPAP54920 295 aa16.41■□□□□ 0.22
COLCA1-204ENST00000540738 DCTPP1Q9H773 170 aa16.41■□□□□ 0.22
COLCA1-204ENST00000540738 KDM5AP29375 1690 aaKnown RBP16.4■□□□□ 0.22
COLCA1-204ENST00000540738 GUCY1B3Q02153 619 aa16.4■□□□□ 0.22
COLCA1-204ENST00000540738 JCADQ9P266 1359 aa16.4■□□□□ 0.22
COLCA1-204ENST00000540738 HSP90AA2PQ14568 343 aaPredicted RBP16.4■□□□□ 0.22
COLCA1-204ENST00000540738 HEATR3Q7Z4Q2 680 aa16.4■□□□□ 0.22
COLCA1-204ENST00000540738 RBM8AQ9Y5S9 174 aaKnown RBP16.4■□□□□ 0.22
COLCA1-204ENST00000540738 ERBB3P21860 1342 aa16.4■□□□□ 0.22
COLCA1-204ENST00000540738 GIGYF1O75420 1035 aaPredicted RBP16.4■□□□□ 0.22
COLCA1-204ENST00000540738 CRKLP46109 303 aaKnown RBP16.4■□□□□ 0.22
COLCA1-204ENST00000540738 NASPP49321 788 aaPredicted RBP16.4■□□□□ 0.22
COLCA1-204ENST00000540738 CLASP1Q7Z460 1538 aa16.4■□□□□ 0.22
COLCA1-204ENST00000540738 USP48Q86UV5 1035 aa16.4■□□□□ 0.22
COLCA1-204ENST00000540738 RUFY1Q96T51 708 aa16.4■□□□□ 0.22
COLCA1-204ENST00000540738 KIF1BO60333 1816 aa16.39■□□□□ 0.22
COLCA1-204ENST00000540738 BRF1Q92994 677 aa16.39■□□□□ 0.21
COLCA1-204ENST00000540738 SDSP20132 328 aa16.39■□□□□ 0.21
COLCA1-204ENST00000540738 USPL1Q5W0Q7 1092 aa16.39■□□□□ 0.21
COLCA1-204ENST00000540738 DRC1Q96MC2 740 aa16.39■□□□□ 0.21
COLCA1-204ENST00000540738 SPATA31E1Q6ZUB1 1445 aa16.39■□□□□ 0.21
COLCA1-204ENST00000540738 PRDM15P57071 1507 aaPredicted RBP16.39■□□□□ 0.21
COLCA1-204ENST00000540738 TBCAO75347 108 aaKnown RBP16.39■□□□□ 0.21
COLCA1-204ENST00000540738 RBM25P49756 843 aaKnown RBP16.39■□□□□ 0.21
COLCA1-204ENST00000540738 MRE11P49959 708 aa16.39■□□□□ 0.21
COLCA1-204ENST00000540738 FKBP15Q5T1M5 1219 aa16.39■□□□□ 0.21
COLCA1-204ENST00000540738 HELLSQ9NRZ9 838 aa16.39■□□□□ 0.21
COLCA1-204ENST00000540738 ZNF397Q8NF99 534 aaPredicted RBP16.39■□□□□ 0.21
COLCA1-204ENST00000540738 MBD4O95243 580 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 NCBP1Q09161 790 aaKnown RBP16.38■□□□□ 0.21
COLCA1-204ENST00000540738 ADGRL3Q9HAR2 1447 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 LIG1P18858 919 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 G2E3Q7L622 706 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 CCDC24Q8N4L8 307 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 NMIQ13287 307 aaPredicted RBP16.38■□□□□ 0.21
COLCA1-204ENST00000540738 TNNI3KQ59H18 835 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 XAGE2Q96GT9 111 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 FPGT-TNNI3KV9GXZ4 949 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 SYNMO15061 1565 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 CTSWP56202 376 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 RAB3GAP1Q15042 981 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 NFKBIBQ15653 356 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 TTLL5Q6EMB2 1281 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 USP19O94966 1318 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 TET3O43151 1660 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 CETN2P41208 172 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 ANAPC15P60006 121 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 CSADQ9Y600 493 aa16.38■□□□□ 0.21
COLCA1-204ENST00000540738 MAP3K15Q6ZN16 1313 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 ACBD3Q9H3P7 528 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 GNA11P29992 359 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 MAP3K11Q16584 847 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 NAP1L4Q99733 375 aaKnown RBP16.37■□□□□ 0.21
COLCA1-204ENST00000540738 PRC1O43663 620 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 RIMBP3CA6NJZ7 1639 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 RIMBP3BA6NNM3 1639 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 RIMBP3Q9UFD9 1639 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 KANK3Q6NY19 840 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 ESYT1Q9BSJ8 1104 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 CCDC171Q6TFL3 1326 aa16.37■□□□□ 0.21
COLCA1-204ENST00000540738 IDEP14735 1019 aa16.36■□□□□ 0.21
COLCA1-204ENST00000540738 DCAF15Q66K64 600 aa16.36■□□□□ 0.21
COLCA1-204ENST00000540738 USP37Q86T82 979 aa16.36■□□□□ 0.21
COLCA1-204ENST00000540738 VPS36Q86VN1 386 aa16.36■□□□□ 0.21
COLCA1-204ENST00000540738 SYCP3Q8IZU3 236 aa16.36■□□□□ 0.21
COLCA1-204ENST00000540738 TEKT1Q969V4 418 aa16.36■□□□□ 0.21
COLCA1-204ENST00000540738 CTAGE5O15320 804 aa16.36■□□□□ 0.21
COLCA1-204ENST00000540738 PCCAP05165 728 aaPredicted RBP16.36■□□□□ 0.21
COLCA1-204ENST00000540738 ZBTB38Q8NAP3 1195 aaPredicted RBP16.36■□□□□ 0.21
COLCA1-204ENST00000540738 IL17REQ8NFR9 667 aa16.36■□□□□ 0.21
COLCA1-204ENST00000540738 PARP1P09874 1014 aaKnown RBP16.35■□□□□ 0.21
COLCA1-204ENST00000540738 CNNM3Q8NE01 707 aa16.35■□□□□ 0.21
COLCA1-204ENST00000540738 TIMM10P62072 90 aa16.35■□□□□ 0.21
COLCA1-204ENST00000540738 CC2D2BQ6DHV5 1058 aa16.35■□□□□ 0.21
COLCA1-204ENST00000540738 DCPSQ96C86 337 aaKnown RBP16.35■□□□□ 0.21
COLCA1-204ENST00000540738 RBM28Q9NW13 759 aaKnown RBP16.35■□□□□ 0.21
COLCA1-204ENST00000540738 TRMT1LQ7Z2T5 733 aaKnown RBP16.35■□□□□ 0.21
COLCA1-204ENST00000540738 SPATA31A6Q5VVP1 1343 aa16.35■□□□□ 0.21
COLCA1-204ENST00000540738 IGSF1Q8N6C5 1336 aa16.35■□□□□ 0.21
COLCA1-204ENST00000540738 SULF1Q8IWU6 871 aa16.35■□□□□ 0.21
COLCA1-204ENST00000540738 ZSCAN16Q9H4T2 348 aaPredicted RBP16.35■□□□□ 0.21
COLCA1-204ENST00000540738 ARGLU1Q9NWB6 273 aaPredicted RBP16.35■□□□□ 0.21
COLCA1-204ENST00000540738 BICD1Q96G01 975 aa16.35■□□□□ 0.21
COLCA1-204ENST00000540738 ALG1Q9BT22 464 aa16.35■□□□□ 0.21
COLCA1-204ENST00000540738 TAF5LO75529 589 aa16.34■□□□□ 0.21
COLCA1-204ENST00000540738 TRIM35Q9UPQ4 493 aa16.34■□□□□ 0.21
COLCA1-204ENST00000540738 NEURL1BA8MQ27 555 aa16.34■□□□□ 0.21
COLCA1-204ENST00000540738 SERPINB2P05120 415 aa16.34■□□□□ 0.21
COLCA1-204ENST00000540738 GLT8D2Q9H1C3 349 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms