RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 MMP14P50281 582 aa14.83□□□□□ -0.04
SYNE1-238ENST00000540663 TRPM4Q8TD43 1214 aa14.83□□□□□ -0.04
SYNE1-238ENST00000540663 ZNF594Q96JF6 807 aaPredicted RBP14.83□□□□□ -0.04
SYNE1-238ENST00000540663 GMLQ99445 158 aa14.83□□□□□ -0.04
SYNE1-238ENST00000540663 MYO3BQ8WXR4 1341 aa14.83□□□□□ -0.04
SYNE1-238ENST00000540663 UBTFL1P0CB47 393 aaPredicted RBP14.82□□□□□ -0.04
SYNE1-238ENST00000540663 ZNF280AP59817 542 aaPredicted RBP14.82□□□□□ -0.04
SYNE1-238ENST00000540663 STRIP1Q5VSL9 837 aa14.82□□□□□ -0.04
SYNE1-238ENST00000540663 INTS3Q68E01 1043 aaKnown RBP14.82□□□□□ -0.04
SYNE1-238ENST00000540663 JMYQ8N9B5 988 aa14.82□□□□□ -0.04
SYNE1-238ENST00000540663 MROH5Q6ZUA9 1318 aa14.82□□□□□ -0.04
SYNE1-238ENST00000540663 TAF5LO75529 589 aa14.81□□□□□ -0.04
SYNE1-238ENST00000540663 HIRAP54198 1017 aaPredicted RBP14.81□□□□□ -0.04
SYNE1-238ENST00000540663 UBE4AQ14139 1066 aa14.81□□□□□ -0.04
SYNE1-238ENST00000540663 DACT2Q5SW24 774 aa14.81□□□□□ -0.04
SYNE1-238ENST00000540663 ZNF804AQ7Z570 1209 aa14.81□□□□□ -0.04
SYNE1-238ENST00000540663 TXNRD3Q86VQ6 643 aa14.81□□□□□ -0.04
SYNE1-238ENST00000540663 HELBQ8NG08 1087 aaPredicted RBP14.81□□□□□ -0.04
SYNE1-238ENST00000540663 RIPOR2Q9Y4F9 1068 aa14.81□□□□□ -0.04
SYNE1-238ENST00000540663 IRS2Q9Y4H2 1338 aa14.81□□□□□ -0.04
SYNE1-238ENST00000540663 SHTN1A0MZ66 631 aa14.8□□□□□ -0.04
SYNE1-238ENST00000540663 GNAI3P08754 354 aa14.8□□□□□ -0.04
SYNE1-238ENST00000540663 USP17L8P0C7I0 530 aa14.8□□□□□ -0.04
SYNE1-238ENST00000540663 KLRK1P26718 216 aa14.8□□□□□ -0.04
SYNE1-238ENST00000540663 TBC1D10BQ4KMP7 808 aaPredicted RBP14.8□□□□□ -0.04
SYNE1-238ENST00000540663 ATF7IPQ6VMQ6 1270 aa14.8□□□□□ -0.04
SYNE1-238ENST00000540663 SAMD7Q7Z3H4 446 aa14.8□□□□□ -0.04
SYNE1-238ENST00000540663 CD209Q9NNX6 404 aa14.8□□□□□ -0.04
SYNE1-238ENST00000540663 PLIN1O60240 522 aa14.79□□□□□ -0.04
SYNE1-238ENST00000540663 BCAR3O75815 825 aa14.79□□□□□ -0.04
SYNE1-238ENST00000540663 CNTNAP1P78357 1384 aa14.79□□□□□ -0.04
SYNE1-238ENST00000540663 KIF4BQ2VIQ3 1234 aa14.79□□□□□ -0.04
SYNE1-238ENST00000540663 TTLL5Q6EMB2 1281 aa14.79□□□□□ -0.04
SYNE1-238ENST00000540663 CDC37L1Q7L3B6 337 aa14.79□□□□□ -0.04
SYNE1-238ENST00000540663 ZNF646O15015 1829 aaPredicted RBP14.78□□□□□ -0.04
SYNE1-238ENST00000540663 SNAP23O00161 211 aa14.78□□□□□ -0.04
SYNE1-238ENST00000540663 TRIM27P14373 513 aa14.78□□□□□ -0.04
SYNE1-238ENST00000540663 IL1R1P14778 569 aa14.78□□□□□ -0.04
SYNE1-238ENST00000540663 METTL24Q5JXM2 366 aa14.78□□□□□ -0.04
SYNE1-238ENST00000540663 OGFOD1Q8N543 542 aa14.78□□□□□ -0.04
SYNE1-238ENST00000540663 FRAT1Q92837 279 aaPredicted RBP14.78□□□□□ -0.04
SYNE1-238ENST00000540663 FBXW7Q969H0 707 aa14.78□□□□□ -0.04
SYNE1-238ENST00000540663 PUS3Q9BZE2 481 aaKnown RBP14.78□□□□□ -0.04
SYNE1-238ENST00000540663 FBXO3Q9UK99 471 aa14.78□□□□□ -0.04
SYNE1-238ENST00000540663 TRPM7Q96QT4 1865 aa14.78□□□□□ -0.04
SYNE1-238ENST00000540663 EGFRP00533 1210 aa14.77□□□□□ -0.05
SYNE1-238ENST00000540663 ZKSCAN2Q63HK3 967 aa14.77□□□□□ -0.05
SYNE1-238ENST00000540663 DCPSQ96C86 337 aaKnown RBP14.77□□□□□ -0.05
SYNE1-238ENST00000540663 MEIS3Q99687 375 aa14.77□□□□□ -0.05
SYNE1-238ENST00000540663 GLIS2Q9BZE0 524 aaPredicted RBP14.77□□□□□ -0.05
SYNE1-238ENST00000540663 MYOZ2Q9NPC6 264 aa14.77□□□□□ -0.05
SYNE1-238ENST00000540663 PCNTO95613 3336 aa14.76□□□□□ -0.05
SYNE1-238ENST00000540663 RASSF10A6NK89 507 aa14.76□□□□□ -0.05
SYNE1-238ENST00000540663 TRAF5O00463 557 aa14.76□□□□□ -0.05
SYNE1-238ENST00000540663 RFX5P48382 616 aaPredicted RBP14.76□□□□□ -0.05
SYNE1-238ENST00000540663 FKBP1AP62942 108 aaKnown RBP14.76□□□□□ -0.05
SYNE1-238ENST00000540663 GTF2IP78347 998 aa14.76□□□□□ -0.05
SYNE1-238ENST00000540663 LRRC24Q50LG9 513 aa14.76□□□□□ -0.05
SYNE1-238ENST00000540663 RBM26Q5T8P6 1007 aaKnown RBP14.76□□□□□ -0.05
SYNE1-238ENST00000540663 KRT26Q7Z3Y9 468 aa14.76□□□□□ -0.05
SYNE1-238ENST00000540663 VGLL2Q8N8G2 317 aa14.76□□□□□ -0.05
SYNE1-238ENST00000540663 LRRFIP2Q9Y608 721 aaKnown RBP14.76□□□□□ -0.05
SYNE1-238ENST00000540663 PITPNM2Q9BZ72 1349 aa14.75□□□□□ -0.05
SYNE1-238ENST00000540663 EYA2O00167 538 aa14.75□□□□□ -0.05
SYNE1-238ENST00000540663 PDE8BO95263 885 aa14.75□□□□□ -0.05
SYNE1-238ENST00000540663 HIBADHP31937 336 aaKnown RBP14.75□□□□□ -0.05
SYNE1-238ENST00000540663 PTPN12Q05209 780 aaKnown RBP14.75□□□□□ -0.05
SYNE1-238ENST00000540663 CST9Q5W186 159 aa14.75□□□□□ -0.05
SYNE1-238ENST00000540663 USP48Q86UV5 1035 aa14.75□□□□□ -0.05
SYNE1-238ENST00000540663 KLHDC4Q8TBB5 520 aa14.75□□□□□ -0.05
SYNE1-238ENST00000540663 GGA3Q9NZ52 723 aa14.75□□□□□ -0.05
SYNE1-238ENST00000540663 MKRN1Q9UHC7 482 aaKnown RBP14.75□□□□□ -0.05
SYNE1-238ENST00000540663 HDAC9Q9UKV0 1011 aa14.75□□□□□ -0.05
SYNE1-238ENST00000540663 ABT1Q9ULW3 272 aaKnown RBP14.75□□□□□ -0.05
SYNE1-238ENST00000540663 FAM205AQ6ZU69 1335 aa14.74□□□□□ -0.05
SYNE1-238ENST00000540663 CIAO1O76071 339 aa14.74□□□□□ -0.05
SYNE1-238ENST00000540663 SASH1O94885 1247 aa14.74□□□□□ -0.05
SYNE1-238ENST00000540663 CELF2O95319 508 aaKnown RBP14.74□□□□□ -0.05
SYNE1-238ENST00000540663 SCARF1Q14162 830 aa14.74□□□□□ -0.05
SYNE1-238ENST00000540663 PUM3Q15397 648 aaKnown RBP14.74□□□□□ -0.05
SYNE1-238ENST00000540663 DEFB115Q30KQ5 88 aa14.74□□□□□ -0.05
SYNE1-238ENST00000540663 SULF1Q8IWU6 871 aa14.74□□□□□ -0.05
SYNE1-238ENST00000540663 FAM84BQ96KN1 310 aaPredicted RBP14.74□□□□□ -0.05
SYNE1-238ENST00000540663 MXD3Q9BW11 206 aa14.74□□□□□ -0.05
SYNE1-238ENST00000540663 IFIT1P09914 478 aaKnown RBP14.73□□□□□ -0.05
SYNE1-238ENST00000540663 FMR1Q06787 632 aaKnown RBP eCLIP14.73□□□□□ -0.05
SYNE1-238ENST00000540663 MTX1Q13505 466 aa14.73□□□□□ -0.05
SYNE1-238ENST00000540663 CAVIN4Q5BKX8 364 aa14.73□□□□□ -0.05
SYNE1-238ENST00000540663 FBXO33Q7Z6M2 555 aa14.73□□□□□ -0.05
SYNE1-238ENST00000540663 VPS37DQ86XT2 251 aa14.73□□□□□ -0.05
SYNE1-238ENST00000540663 TDRD7Q8NHU6 1098 aaKnown RBP14.73□□□□□ -0.05
SYNE1-238ENST00000540663 HHIPL1Q96JK4 782 aa14.73□□□□□ -0.05
SYNE1-238ENST00000540663 TLL2Q9Y6L7 1015 aa14.73□□□□□ -0.05
SYNE1-238ENST00000540663 GNAI2P04899 355 aa14.72□□□□□ -0.05
SYNE1-238ENST00000540663 FGFR2P21802 821 aa14.72□□□□□ -0.05
SYNE1-238ENST00000540663 GYG1P46976 350 aa14.72□□□□□ -0.05
SYNE1-238ENST00000540663 VEGFBP49765 207 aa14.72□□□□□ -0.05
SYNE1-238ENST00000540663 ANGEL2Q5VTE6 544 aaKnown RBP14.72□□□□□ -0.05
SYNE1-238ENST00000540663 ATG9AQ7Z3C6 839 aa14.72□□□□□ -0.05
SYNE1-238ENST00000540663 KIAA0825Q8IV33 1275 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms