RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 HCLS1P14317 486 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-212ENST00000540304 HSPA1LP34931 641 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 AK2P54819 239 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 ADCK5Q3MIX3 580 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 VPS53Q5VIR6 699 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 USPL1Q5W0Q7 1092 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 PTF1AQ7RTS3 328 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 AFF2P51816 1311 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 RTL9Q8NET4 1388 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 LY75O60449 1722 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 CPA1P15085 419 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 PTMSP20962 102 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 PSMA5P28066 241 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 RUFY3Q7L099 469 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 LIMCH1Q9UPQ0 1083 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 MROH5Q6ZUA9 1318 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 ATRNO75882 1429 aa11.52□□□□□ -0.56
CLIP1-212ENST00000540304 PDE8BO95263 885 aa11.52□□□□□ -0.56
CLIP1-212ENST00000540304 LRRFIP1Q32MZ4 808 aaKnown RBP11.52□□□□□ -0.56
CLIP1-212ENST00000540304 RC3H1Q5TC82 1133 aaKnown RBP11.52□□□□□ -0.56
CLIP1-212ENST00000540304 SEC62Q99442 399 aaKnown RBP11.52□□□□□ -0.56
CLIP1-212ENST00000540304 GZF1Q9H116 711 aaPredicted RBP11.52□□□□□ -0.56
CLIP1-212ENST00000540304 PDRG1Q9NUG6 133 aa11.52□□□□□ -0.56
CLIP1-212ENST00000540304 U3KPZ7 1027 aaPredicted RBP11.52□□□□□ -0.56
CLIP1-212ENST00000540304 MYH7P12883 1935 aa11.52□□□□□ -0.57
CLIP1-212ENST00000540304 FKBP4Q02790 459 aaKnown RBP eCLIP11.52□□□□□ -0.57
CLIP1-212ENST00000540304 TSGA10IPQ3SY00 556 aa11.52□□□□□ -0.57
CLIP1-212ENST00000540304 CCDC152Q4G0S7 254 aa11.52□□□□□ -0.57
CLIP1-212ENST00000540304 ZMYM1Q5SVZ6 1142 aa11.52□□□□□ -0.57
CLIP1-212ENST00000540304 CCDC129Q6ZRS4 1044 aa11.52□□□□□ -0.57
CLIP1-212ENST00000540304 CHAMP1Q96JM3 812 aa11.52□□□□□ -0.57
CLIP1-212ENST00000540304 TAF1LQ8IZX4 1826 aa11.52□□□□□ -0.57
CLIP1-212ENST00000540304 AKAP11Q9UKA4 1901 aa11.51□□□□□ -0.57
CLIP1-212ENST00000540304 RNF113AO15541 343 aaKnown RBP11.51□□□□□ -0.57
CLIP1-212ENST00000540304 KCNQ4P56696 695 aa11.51□□□□□ -0.57
CLIP1-212ENST00000540304 FOXD4L5Q5VV16 416 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-212ENST00000540304 FOXD4L4Q8WXT5 416 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-212ENST00000540304 ZNF512BQ96KM6 892 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-212ENST00000540304 CASZ1Q86V15 1759 aa11.51□□□□□ -0.57
CLIP1-212ENST00000540304 TRAK2O60296 914 aa11.51□□□□□ -0.57
CLIP1-212ENST00000540304 COL9A3Q14050 684 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-212ENST00000540304 KRT32Q14532 448 aa11.51□□□□□ -0.57
CLIP1-212ENST00000540304 PUM3Q15397 648 aaKnown RBP11.51□□□□□ -0.57
CLIP1-212ENST00000540304 SLFNL1Q499Z3 407 aa11.51□□□□□ -0.57
CLIP1-212ENST00000540304 GOLGA6L22H0YM25 854 aa11.5□□□□□ -0.57
CLIP1-212ENST00000540304 ONECUT3O60422 494 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-212ENST00000540304 BAG4O95429 457 aaKnown RBP11.5□□□□□ -0.57
CLIP1-212ENST00000540304 ZFYP08048 801 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-212ENST00000540304 SCARF1Q14162 830 aa11.5□□□□□ -0.57
CLIP1-212ENST00000540304 FAM182BQ5T319 152 aa11.5□□□□□ -0.57
CLIP1-212ENST00000540304 BLOC1S2Q6QNY1 142 aa11.5□□□□□ -0.57
CLIP1-212ENST00000540304 MPHOSPH8Q99549 860 aa11.5□□□□□ -0.57
CLIP1-212ENST00000540304 CCNL1Q9UK58 526 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-212ENST00000540304 TRPC5Q9UL62 973 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-212ENST00000540304 RPS6KA4O75676 772 aa11.5□□□□□ -0.57
CLIP1-212ENST00000540304 LPIN2Q92539 896 aa11.5□□□□□ -0.57
CLIP1-212ENST00000540304 ZSCAN31Q96LW9 406 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-212ENST00000540304 DSCC1Q9BVC3 393 aa11.5□□□□□ -0.57
CLIP1-212ENST00000540304 COL24A1Q17RW2 1714 aa11.5□□□□□ -0.57
CLIP1-212ENST00000540304 FGFR2P21802 821 aa11.49□□□□□ -0.57
CLIP1-212ENST00000540304 ZAP70P43403 619 aa11.49□□□□□ -0.57
CLIP1-212ENST00000540304 SH2B1Q9NRF2 756 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-212ENST00000540304 ZDHHC9Q9Y397 364 aa11.49□□□□□ -0.57
CLIP1-212ENST00000540304 MAST3O60307 1309 aa11.49□□□□□ -0.57
CLIP1-212ENST00000540304 IGHMBP2P38935 993 aaKnown RBP11.49□□□□□ -0.57
CLIP1-212ENST00000540304 ALDH8A1Q9H2A2 487 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-212ENST00000540304 SEC31BQ9NQW1 1179 aa11.49□□□□□ -0.57
CLIP1-212ENST00000540304 NARFQ9UHQ1 456 aa11.49□□□□□ -0.57
CLIP1-212ENST00000540304 TAF6LQ9Y6J9 622 aa11.49□□□□□ -0.57
CLIP1-212ENST00000540304 GNPATO15228 680 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 UQCRFS1P1P0C7P4 283 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 SLC5A1P13866 664 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 RPS6KB1P23443 525 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 CLCN1P35523 988 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 MCAMP43121 646 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 ANKRD1Q15327 319 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 SMAP1Q8IYB5 467 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-212ENST00000540304 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-212ENST00000540304 BRD1O95696 1058 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 ARID4AP29374 1257 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-212ENST00000540304 TTF1Q15361 905 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-212ENST00000540304 SKOR2Q2VWA4 1001 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-212ENST00000540304 ERFEQ4G0M1 354 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 PPP4R3BQ5MIZ7 849 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 CCDC102BQ68D86 513 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 SMIM5Q71RC9 77 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 SEPT12Q8IYM1 358 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 C4BP0C0L5 1744 aa11.48□□□□□ -0.57
CLIP1-212ENST00000540304 A0A1B0GUL6 1792 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 M0R2C6 588 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 CYP21A2P08686 494 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 TBC1D9BQ66K14 1250 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 PI16Q6UXB8 463 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 HELBQ8NG08 1087 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-212ENST00000540304 CDC5LQ99459 802 aaKnown RBP11.47□□□□□ -0.57
CLIP1-212ENST00000540304 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.47□□□□□ -0.574e-6■■□□□ 12.7
CLIP1-212ENST00000540304 BCL2L12Q9HB09 334 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 RTCBQ9Y3I0 505 aaKnown RBP11.47□□□□□ -0.57
CLIP1-212ENST00000540304 LAMA4Q16363 1823 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 C4AP0C0L4 1744 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms