RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 DHX40Q8IX18 779 aaKnown RBP23.79■■□□□ 1.4
TMEM260-203ENST00000539559 ZNF215Q9UL58 517 aaPredicted RBP23.79■■□□□ 1.4
TMEM260-203ENST00000539559 ATP5JP18859 108 aa23.79■■□□□ 1.4
TMEM260-203ENST00000539559 PTPN12Q05209 780 aaKnown RBP23.79■■□□□ 1.4
TMEM260-203ENST00000539559 STX1AQ16623 288 aa23.79■■□□□ 1.4
TMEM260-203ENST00000539559 AOPEPQ8N6M6 819 aa23.79■■□□□ 1.4
TMEM260-203ENST00000539559 ZSCAN16Q9H4T2 348 aaPredicted RBP23.79■■□□□ 1.4
TMEM260-203ENST00000539559 PAXBP1Q9Y5B6 917 aa23.79■■□□□ 1.4
TMEM260-203ENST00000539559 ME1P48163 572 aa23.78■■□□□ 1.4
TMEM260-203ENST00000539559 MCMDC2Q4G0Z9 681 aa23.78■■□□□ 1.4
TMEM260-203ENST00000539559 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.78■■□□□ 1.42e-7■■■■■ 28.3
TMEM260-203ENST00000539559 OTUD7BQ6GQQ9 843 aa23.77■■□□□ 1.4
TMEM260-203ENST00000539559 FSIP1Q8NA03 581 aa23.77■■□□□ 1.4
TMEM260-203ENST00000539559 PTPN14Q15678 1187 aa23.77■■□□□ 1.4
TMEM260-203ENST00000539559 CCDC73Q6ZRK6 1079 aa23.77■■□□□ 1.4
TMEM260-203ENST00000539559 SMARCC2Q8TAQ2 1214 aa23.77■■□□□ 1.4
TMEM260-203ENST00000539559 OGFRQ9NZT2 677 aa23.77■■□□□ 1.4
TMEM260-203ENST00000539559 U3KPZ7 1027 aaPredicted RBP23.77■■□□□ 1.4
TMEM260-203ENST00000539559 CCZ1BP86790 482 aa23.77■■□□□ 1.39
TMEM260-203ENST00000539559 CCZ1P86791 482 aaPredicted RBP23.77■■□□□ 1.39
TMEM260-203ENST00000539559 RCOR1Q9UKL0 485 aa23.77■■□□□ 1.39
TMEM260-203ENST00000539559 KINO60870 393 aaKnown RBP23.76■■□□□ 1.39
TMEM260-203ENST00000539559 RFX5P48382 616 aaPredicted RBP23.76■■□□□ 1.39
TMEM260-203ENST00000539559 TAOK2Q9UL54 1235 aa23.76■■□□□ 1.39
TMEM260-203ENST00000539559 CDC25BP30305 580 aa23.76■■□□□ 1.39
TMEM260-203ENST00000539559 ILDR1Q86SU0 546 aaPredicted RBP23.76■■□□□ 1.39
TMEM260-203ENST00000539559 FEZ1Q99689 392 aa23.76■■□□□ 1.39
TMEM260-203ENST00000539559 GPHNQ9NQX3 736 aaPredicted RBP23.76■■□□□ 1.39
TMEM260-203ENST00000539559 GOLIM4O00461 696 aa23.75■■□□□ 1.39
TMEM260-203ENST00000539559 PFKFB2O60825 505 aa23.75■■□□□ 1.39
TMEM260-203ENST00000539559 SARM1Q6SZW1 724 aa23.75■■□□□ 1.39
TMEM260-203ENST00000539559 MRFAP1L1Q96HT8 127 aa23.75■■□□□ 1.39
TMEM260-203ENST00000539559 PLEKHG2Q9H7P9 1386 aa23.75■■□□□ 1.39
TMEM260-203ENST00000539559 A0A1B0GVL5 298 aa23.75■■□□□ 1.39
TMEM260-203ENST00000539559 ZNF790Q6PG37 636 aa23.75■■□□□ 1.39
TMEM260-203ENST00000539559 NEUROD6Q96NK8 337 aa23.75■■□□□ 1.39
TMEM260-203ENST00000539559 NFATC2IPQ8NCF5 419 aa23.74■■□□□ 1.39
TMEM260-203ENST00000539559 METTL22Q9BUU2 404 aaPredicted RBP23.74■■□□□ 1.39
TMEM260-203ENST00000539559 PRDM11Q9NQV5 511 aa23.74■■□□□ 1.39
TMEM260-203ENST00000539559 KMT5BQ4FZB7 885 aa23.74■■□□□ 1.39
TMEM260-203ENST00000539559 ZNF771Q7L3S4 317 aaPredicted RBP23.74■■□□□ 1.39
TMEM260-203ENST00000539559 RAB11FIP4Q86YS3 637 aa23.74■■□□□ 1.39
TMEM260-203ENST00000539559 ENGASEQ8NFI3 743 aa23.74■■□□□ 1.39
TMEM260-203ENST00000539559 COPRSQ9NQ92 184 aa23.74■■□□□ 1.39
TMEM260-203ENST00000539559 CGNQ9P2M7 1197 aaKnown RBP23.74■■□□□ 1.39
TMEM260-203ENST00000539559 ELF2Q15723 593 aa23.73■■□□□ 1.39
TMEM260-203ENST00000539559 NYAP1Q6ZVC0 841 aa23.73■■□□□ 1.39
TMEM260-203ENST00000539559 DHX32Q7L7V1 743 aaKnown RBP23.73■■□□□ 1.39
TMEM260-203ENST00000539559 DDX41Q9UJV9 622 aaKnown RBP23.73■■□□□ 1.39
TMEM260-203ENST00000539559 MEGF6O75095 1541 aa23.73■■□□□ 1.39
TMEM260-203ENST00000539559 PHKG2P15735 406 aa23.73■■□□□ 1.39
TMEM260-203ENST00000539559 RBM6P78332 1123 aaKnown RBP23.73■■□□□ 1.39
TMEM260-203ENST00000539559 FMNL2Q96PY5 1086 aa23.73■■□□□ 1.39
TMEM260-203ENST00000539559 BIN1O00499 593 aa23.72■■□□□ 1.39
TMEM260-203ENST00000539559 IFNL2Q8IZJ0 200 aa23.72■■□□□ 1.39
TMEM260-203ENST00000539559 ZNF496Q96IT1 587 aaPredicted RBP23.72■■□□□ 1.39
TMEM260-203ENST00000539559 HAUS7Q99871 368 aa23.72■■□□□ 1.39
TMEM260-203ENST00000539559 GJB4Q9NTQ9 266 aa23.72■■□□□ 1.39
TMEM260-203ENST00000539559 TIMM10P62072 90 aa23.72■■□□□ 1.39
TMEM260-203ENST00000539559 TTLL5Q6EMB2 1281 aa23.72■■□□□ 1.39
TMEM260-203ENST00000539559 ANKRD13DQ6ZTN6 518 aa23.72■■□□□ 1.39
TMEM260-203ENST00000539559 KIF18AQ8NI77 898 aa23.72■■□□□ 1.39
TMEM260-203ENST00000539559 ADAMTS7Q9UKP4 1686 aa23.71■■□□□ 1.39
TMEM260-203ENST00000539559 FAM160A1Q05DH4 1040 aa23.71■■□□□ 1.39
TMEM260-203ENST00000539559 SYCP1Q15431 976 aa23.71■■□□□ 1.39
TMEM260-203ENST00000539559 SDF4Q9BRK5 362 aa23.71■■□□□ 1.39
TMEM260-203ENST00000539559 PCDHA7Q9UN72 937 aa23.71■■□□□ 1.39
TMEM260-203ENST00000539559 NBPF11Q86T75 865 aa23.71■■□□□ 1.39
TMEM260-203ENST00000539559 CCAR2Q8N163 923 aaKnown RBP23.71■■□□□ 1.39
TMEM260-203ENST00000539559 ANO10Q9NW15 660 aa23.71■■□□□ 1.39
TMEM260-203ENST00000539559 A0A087WZG4 1122 aa23.7■■□□□ 1.39
TMEM260-203ENST00000539559 CAVIN2O95810 425 aa23.7■■□□□ 1.39
TMEM260-203ENST00000539559 POLR3DP05423 398 aaPredicted RBP23.7■■□□□ 1.39
TMEM260-203ENST00000539559 ISM2Q6H9L7 571 aa23.7■■□□□ 1.39
TMEM260-203ENST00000539559 NAA16Q6N069 864 aaPredicted RBP23.7■■□□□ 1.39
TMEM260-203ENST00000539559 CTAGE5O15320 804 aa23.7■■□□□ 1.38
TMEM260-203ENST00000539559 DPCR1Q3MIW9 517 aa23.7■■□□□ 1.38
TMEM260-203ENST00000539559 KIF20AO95235 890 aa23.69■■□□□ 1.38
TMEM260-203ENST00000539559 NDUFA8P51970 172 aa23.69■■□□□ 1.38
TMEM260-203ENST00000539559 CEP57L1Q8IYX8 460 aa23.69■■□□□ 1.38
TMEM260-203ENST00000539559 LRRN4CLQ8ND94 238 aa23.69■■□□□ 1.38
TMEM260-203ENST00000539559 FBXO38Q6PIJ6 1188 aa23.69■■□□□ 1.38
TMEM260-203ENST00000539559 LMBR1LQ6UX01 489 aa23.69■■□□□ 1.38
TMEM260-203ENST00000539559 KBTBD3Q8NAB2 608 aa23.69■■□□□ 1.38
TMEM260-203ENST00000539559 SLC52A2Q9HAB3 445 aa23.69■■□□□ 1.38
TMEM260-203ENST00000539559 ST7Q9NRC1 585 aa23.69■■□□□ 1.38
TMEM260-203ENST00000539559 E7EWF7 191 aa23.68■■□□□ 1.38
TMEM260-203ENST00000539559 LLPHQ9BRT6 129 aaKnown RBP23.68■■□□□ 1.38
TMEM260-203ENST00000539559 SMC2O95347 1197 aa23.68■■□□□ 1.38
TMEM260-203ENST00000539559 PDIA3P30101 505 aaKnown RBP23.68■■□□□ 1.38
TMEM260-203ENST00000539559 CLIC4Q9Y696 253 aa23.68■■□□□ 1.38
TMEM260-203ENST00000539559 KDM6AO15550 1401 aaPredicted RBP23.68■■□□□ 1.38
TMEM260-203ENST00000539559 LAMA4Q16363 1823 aa23.68■■□□□ 1.38
TMEM260-203ENST00000539559 EXOSC10Q01780 885 aaKnown RBP23.67■■□□□ 1.38
TMEM260-203ENST00000539559 ZNF396Q96N95 335 aaPredicted RBP23.67■■□□□ 1.38
TMEM260-203ENST00000539559 SIPA1L3O60292 1781 aaPredicted RBP23.67■■□□□ 1.38
TMEM260-203ENST00000539559 WDR17Q8IZU2 1322 aa23.67■■□□□ 1.38
TMEM260-203ENST00000539559 MRC1P22897 1456 aa23.67■■□□□ 1.38
TMEM260-203ENST00000539559 FDPSP14324 419 aaKnown RBP23.67■■□□□ 1.38
TMEM260-203ENST00000539559 HAND2P61296 217 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms