RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 CNNM1Q9NRU3 951 aa23.9■■□□□ 1.42
CLIP1-211ENST00000539080 TRPM7Q96QT4 1865 aa23.9■■□□□ 1.42
CLIP1-211ENST00000539080 SAMD7Q7Z3H4 446 aa23.89■■□□□ 1.41
CLIP1-211ENST00000539080 TXNRD3Q86VQ6 643 aa23.89■■□□□ 1.41
CLIP1-211ENST00000539080 ZNF646O15015 1829 aaPredicted RBP23.89■■□□□ 1.41
CLIP1-211ENST00000539080 TAF5LO75529 589 aa23.88■■□□□ 1.41
CLIP1-211ENST00000539080 STRIP1Q5VSL9 837 aa23.88■■□□□ 1.41
CLIP1-211ENST00000539080 ANKRD44Q8N8A2 993 aa23.88■■□□□ 1.41
CLIP1-211ENST00000539080 GMLQ99445 158 aa23.88■■□□□ 1.41
CLIP1-211ENST00000539080 CNTNAP1P78357 1384 aa23.88■■□□□ 1.41
CLIP1-211ENST00000539080 MYO3BQ8WXR4 1341 aa23.87■■□□□ 1.41
CLIP1-211ENST00000539080 IRS2Q9Y4H2 1338 aa23.87■■□□□ 1.41
CLIP1-211ENST00000539080 ZNF280AP59817 542 aaPredicted RBP23.87■■□□□ 1.41
CLIP1-211ENST00000539080 TBC1D10BQ4KMP7 808 aaPredicted RBP23.87■■□□□ 1.41
CLIP1-211ENST00000539080 CDC37L1Q7L3B6 337 aa23.87■■□□□ 1.41
CLIP1-211ENST00000539080 HELBQ8NG08 1087 aaPredicted RBP23.87■■□□□ 1.41
CLIP1-211ENST00000539080 KLRK1P26718 216 aa23.86■■□□□ 1.41
CLIP1-211ENST00000539080 MMP14P50281 582 aa23.86■■□□□ 1.41
CLIP1-211ENST00000539080 KIF4BQ2VIQ3 1234 aa23.86■■□□□ 1.41
CLIP1-211ENST00000539080 USP17L8P0C7I0 530 aa23.85■■□□□ 1.41
CLIP1-211ENST00000539080 DACT2Q5SW24 774 aa23.85■■□□□ 1.41
CLIP1-211ENST00000539080 HDAC5Q9UQL6 1122 aa23.85■■□□□ 1.41
CLIP1-211ENST00000539080 MROH5Q6ZUA9 1318 aa23.84■■□□□ 1.41
CLIP1-211ENST00000539080 EGFRP00533 1210 aa23.84■■□□□ 1.41
CLIP1-211ENST00000539080 ZNF804AQ7Z570 1209 aa23.84■■□□□ 1.41
CLIP1-211ENST00000539080 GLIS2Q9BZE0 524 aaPredicted RBP23.84■■□□□ 1.41
CLIP1-211ENST00000539080 CD209Q9NNX6 404 aa23.84■■□□□ 1.41
CLIP1-211ENST00000539080 MKRN1Q9UHC7 482 aaKnown RBP23.84■■□□□ 1.41
CLIP1-211ENST00000539080 RASSF10A6NK89 507 aa23.83■■□□□ 1.41
CLIP1-211ENST00000539080 TRAF5O00463 557 aa23.83■■□□□ 1.41
CLIP1-211ENST00000539080 IPO8O15397 1037 aaKnown RBP23.83■■□□□ 1.41
CLIP1-211ENST00000539080 UBE4AQ14139 1066 aa23.83■■□□□ 1.41
CLIP1-211ENST00000539080 RBM26Q5T8P6 1007 aaKnown RBP23.83■■□□□ 1.41
CLIP1-211ENST00000539080 TTLL5Q6EMB2 1281 aa23.83■■□□□ 1.41
CLIP1-211ENST00000539080 RIPOR2Q9Y4F9 1068 aa23.83■■□□□ 1.41
CLIP1-211ENST00000539080 ZBED9Q6R2W3 1325 aa23.83■■□□□ 1.4
CLIP1-211ENST00000539080 SNAP23O00161 211 aa23.82■■□□□ 1.4
CLIP1-211ENST00000539080 PLIN1O60240 522 aa23.82■■□□□ 1.4
CLIP1-211ENST00000539080 UBTFL1P0CB47 393 aaPredicted RBP23.82■■□□□ 1.4
CLIP1-211ENST00000539080 CST9Q5W186 159 aa23.82■■□□□ 1.4
CLIP1-211ENST00000539080 DCPSQ96C86 337 aaKnown RBP23.82■■□□□ 1.4
CLIP1-211ENST00000539080 ABT1Q9ULW3 272 aaKnown RBP23.82■■□□□ 1.4
CLIP1-211ENST00000539080 IL1R1P14778 569 aa23.81■■□□□ 1.4
CLIP1-211ENST00000539080 FMR1Q06787 632 aaKnown RBP eCLIP23.81■■□□□ 1.4
CLIP1-211ENST00000539080 DEFB115Q30KQ5 88 aa23.81■■□□□ 1.4
CLIP1-211ENST00000539080 INTS3Q68E01 1043 aaKnown RBP23.81■■□□□ 1.4
CLIP1-211ENST00000539080 OGFOD1Q8N543 542 aa23.81■■□□□ 1.4
CLIP1-211ENST00000539080 FBXW7Q969H0 707 aa23.81■■□□□ 1.4
CLIP1-211ENST00000539080 PUS3Q9BZE2 481 aaKnown RBP23.81■■□□□ 1.4
CLIP1-211ENST00000539080 MYOZ2Q9NPC6 264 aa23.81■■□□□ 1.4
CLIP1-211ENST00000539080 GTF2IP78347 998 aa23.79■■□□□ 1.4
CLIP1-211ENST00000539080 KRT26Q7Z3Y9 468 aa23.79■■□□□ 1.4
CLIP1-211ENST00000539080 CELF2O95319 508 aaKnown RBP23.78■■□□□ 1.4
CLIP1-211ENST00000539080 ATF7IPQ6VMQ6 1270 aa23.78■■□□□ 1.4
CLIP1-211ENST00000539080 USP48Q86UV5 1035 aa23.78■■□□□ 1.4
CLIP1-211ENST00000539080 GGA3Q9NZ52 723 aa23.78■■□□□ 1.4
CLIP1-211ENST00000539080 TLL2Q9Y6L7 1015 aa23.78■■□□□ 1.4
CLIP1-211ENST00000539080 BCAR3O75815 825 aa23.77■■□□□ 1.4
CLIP1-211ENST00000539080 VEGFBP49765 207 aa23.77■■□□□ 1.4
CLIP1-211ENST00000539080 FKBP1AP62942 108 aaKnown RBP23.77■■□□□ 1.4
CLIP1-211ENST00000539080 SCARF1Q14162 830 aa23.77■■□□□ 1.4
CLIP1-211ENST00000539080 LRRC24Q50LG9 513 aa23.77■■□□□ 1.4
CLIP1-211ENST00000539080 METTL24Q5JXM2 366 aa23.77■■□□□ 1.4
CLIP1-211ENST00000539080 SULF1Q8IWU6 871 aa23.77■■□□□ 1.4
CLIP1-211ENST00000539080 MXD3Q9BW11 206 aa23.77■■□□□ 1.4
CLIP1-211ENST00000539080 HDAC9Q9UKV0 1011 aa23.77■■□□□ 1.4
CLIP1-211ENST00000539080 PITPNM2Q9BZ72 1349 aa23.77■■□□□ 1.4
CLIP1-211ENST00000539080 POLR2AP24928 1970 aaKnown RBP23.76■■□□□ 1.39
CLIP1-211ENST00000539080 PDE8BO95263 885 aa23.76■■□□□ 1.39
CLIP1-211ENST00000539080 TRIM27P14373 513 aa23.76■■□□□ 1.39
CLIP1-211ENST00000539080 RFX5P48382 616 aaPredicted RBP23.76■■□□□ 1.39
CLIP1-211ENST00000539080 FBXO3Q9UK99 471 aa23.76■■□□□ 1.39
CLIP1-211ENST00000539080 SASH1O94885 1247 aa23.75■■□□□ 1.39
CLIP1-211ENST00000539080 GNAI3P08754 354 aa23.75■■□□□ 1.39
CLIP1-211ENST00000539080 VGLL2Q8N8G2 317 aa23.75■■□□□ 1.39
CLIP1-211ENST00000539080 KLHDC4Q8TBB5 520 aa23.75■■□□□ 1.39
CLIP1-211ENST00000539080 FRAT1Q92837 279 aaPredicted RBP23.75■■□□□ 1.39
CLIP1-211ENST00000539080 HHIPL1Q96JK4 782 aa23.75■■□□□ 1.39
CLIP1-211ENST00000539080 EYA2O00167 538 aa23.74■■□□□ 1.39
CLIP1-211ENST00000539080 HIBADHP31937 336 aaKnown RBP23.74■■□□□ 1.39
CLIP1-211ENST00000539080 ECE1P42892 770 aa23.74■■□□□ 1.39
CLIP1-211ENST00000539080 PTPN12Q05209 780 aaKnown RBP23.74■■□□□ 1.39
CLIP1-211ENST00000539080 ANGEL2Q5VTE6 544 aaKnown RBP23.74■■□□□ 1.39
CLIP1-211ENST00000539080 SAPCD2Q86UD0 394 aa23.74■■□□□ 1.39
CLIP1-211ENST00000539080 MEIS3Q99687 375 aa23.74■■□□□ 1.39
CLIP1-211ENST00000539080 LRRFIP2Q9Y608 721 aaKnown RBP23.74■■□□□ 1.39
CLIP1-211ENST00000539080 ZKSCAN2Q63HK3 967 aa23.73■■□□□ 1.39
CLIP1-211ENST00000539080 KIAA0825Q8IV33 1275 aa23.73■■□□□ 1.39
CLIP1-211ENST00000539080 TDRD7Q8NHU6 1098 aaKnown RBP23.73■■□□□ 1.39
CLIP1-211ENST00000539080 FAM84BQ96KN1 310 aaPredicted RBP23.73■■□□□ 1.39
CLIP1-211ENST00000539080 ZNF408Q9H9D4 720 aa23.73■■□□□ 1.39
CLIP1-211ENST00000539080 ASTN2O75129 1339 aaPredicted RBP23.73■■□□□ 1.39
CLIP1-211ENST00000539080 FAM205AQ6ZU69 1335 aa23.73■■□□□ 1.39
CLIP1-211ENST00000539080 WDR33Q9C0J8 1336 aaKnown RBP23.73■■□□□ 1.39
CLIP1-211ENST00000539080 ADM5C9JUS6 153 aa23.72■■□□□ 1.39
CLIP1-211ENST00000539080 WNT10BO00744 389 aa23.72■■□□□ 1.39
CLIP1-211ENST00000539080 HSPA1AP0DMV8 641 aaKnown RBP23.72■■□□□ 1.39
CLIP1-211ENST00000539080 HSPA1BP0DMV9 641 aaKnown RBP23.72■■□□□ 1.39
CLIP1-211ENST00000539080 THSD7BQ9C0I4 1608 aa23.72■■□□□ 1.39
CLIP1-211ENST00000539080 CIAO1O76071 339 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms