RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 TOB2Q14106 344 aaPredicted RBP7.85□□□□□ -1.15
USP28-206ENST00000538224 PUM3Q15397 648 aaKnown RBP7.85□□□□□ -1.15
USP28-206ENST00000538224 IMMTQ16891 758 aaKnown RBP7.85□□□□□ -1.15
USP28-206ENST00000538224 FOXD4L5Q5VV16 416 aaPredicted RBP7.85□□□□□ -1.15
USP28-206ENST00000538224 DHX32Q7L7V1 743 aaKnown RBP7.85□□□□□ -1.15
USP28-206ENST00000538224 GAS2L3Q86XJ1 694 aa7.85□□□□□ -1.15
USP28-206ENST00000538224 ZNF34Q8IZ26 560 aa7.85□□□□□ -1.15
USP28-206ENST00000538224 FBXL16Q8N461 479 aa7.85□□□□□ -1.15
USP28-206ENST00000538224 FOXD4L4Q8WXT5 416 aaPredicted RBP7.85□□□□□ -1.15
USP28-206ENST00000538224 PPP1R9BQ96SB3 815 aa7.85□□□□□ -1.15
USP28-206ENST00000538224 PUS3Q9BZE2 481 aaKnown RBP7.85□□□□□ -1.15
USP28-206ENST00000538224 RIPOR2Q9Y4F9 1068 aa7.85□□□□□ -1.15
USP28-206ENST00000538224 THSD7AQ9UPZ6 1657 aa7.85□□□□□ -1.15
USP28-206ENST00000538224 MYO5AQ9Y4I1 1855 aaKnown RBP7.85□□□□□ -1.15
USP28-206ENST00000538224 BTAF1O14981 1849 aa7.85□□□□□ -1.15
USP28-206ENST00000538224 CARMIL3Q8ND23 1372 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 ZMYM6O95789 1325 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 C4AP0C0L4 1744 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 C4BP0C0L5 1744 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 KIAA1551Q9HCM1 1747 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 TOM1O60784 492 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 PDE8BO95263 885 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 HSPD1P10809 573 aaKnown RBP7.84□□□□□ -1.15
USP28-206ENST00000538224 SLC5A1P13866 664 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 GPTP24298 496 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 ARID4AP29374 1257 aaPredicted RBP7.84□□□□□ -1.15
USP28-206ENST00000538224 FKBP4Q02790 459 aaKnown RBP eCLIP7.84□□□□□ -1.15
USP28-206ENST00000538224 HLFQ16534 295 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 HS1BP3Q53T59 392 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 CCDC129Q6ZRS4 1044 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 Q6ZUG5 572 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 USP48Q86UV5 1035 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 RGS22Q8NE09 1264 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 LPIN2Q92539 896 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 SLC4A9Q96Q91 983 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 AGXT2Q9BYV1 514 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 PANK2Q9BZ23 570 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 SCAND2PQ9GZW5 306 aaPredicted RBP7.84□□□□□ -1.15
USP28-206ENST00000538224 TSPY26PQ9H489 355 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 ZSCAN16Q9H4T2 348 aaPredicted RBP7.84□□□□□ -1.15
USP28-206ENST00000538224 GREM2Q9H772 168 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 TMEM63CQ9P1W3 806 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 TBC1D2BQ9UPU7 963 aa7.84□□□□□ -1.15
USP28-206ENST00000538224 LY75O60449 1722 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 ECM29Q5VYK3 1845 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 TAF1LQ8IZX4 1826 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 LOC102724428A0A0B4J2F2 783 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 DHX16O60231 1041 aaKnown RBP7.83□□□□□ -1.16
USP28-206ENST00000538224 PFKFB2O60825 505 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 ATP6V1AP38606 617 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 CRKLP46109 303 aaKnown RBP7.83□□□□□ -1.16
USP28-206ENST00000538224 SIK1P57059 783 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 ST3GAL1Q11201 340 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 UBE3CQ15386 1083 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 WASHC4Q2M389 1173 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 UVSSAQ2YD98 709 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 CCDC152Q4G0S7 254 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 ATL3Q6DD88 541 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 VGLL2Q8N8G2 317 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 NECAB1Q8N987 351 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 ZNF274Q96GC6 653 aaPredicted RBP7.83□□□□□ -1.16
USP28-206ENST00000538224 SEC62Q99442 399 aaKnown RBP7.83□□□□□ -1.16
USP28-206ENST00000538224 UTP14AQ9BVJ6 771 aaKnown RBP7.83□□□□□ -1.16
USP28-206ENST00000538224 CNPY2Q9Y2B0 182 aa7.83□□□□□ -1.16
USP28-206ENST00000538224 UBN2Q6ZU65 1347 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 SYCE3A1L190 88 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 E7EWF7 191 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 H3BQV1 296 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 M0R2C6 588 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 FIBPO43427 364 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 ADAMTS2O95450 1211 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 ADORA1P30542 326 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 IGHMBP2P38935 993 aaKnown RBP7.82□□□□□ -1.16
USP28-206ENST00000538224 TRDNQ13061 729 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 IFFO2Q5TF58 517 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 NAA16Q6N069 864 aaPredicted RBP7.82□□□□□ -1.16
USP28-206ENST00000538224 INTS5Q6P9B9 1019 aaKnown RBP7.82□□□□□ -1.16
USP28-206ENST00000538224 CLEC4GQ6UXB4 293 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 RALYLQ86SE5 291 aaKnown RBP7.82□□□□□ -1.16
USP28-206ENST00000538224 SMARCC2Q8TAQ2 1214 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 BRF1Q92994 677 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 PKNOX2Q96KN3 472 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 CDC5LQ99459 802 aaKnown RBP7.82□□□□□ -1.16
USP28-206ENST00000538224 MPHOSPH8Q99549 860 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 RBM27Q9P2N5 1060 aaKnown RBP7.82□□□□□ -1.16
USP28-206ENST00000538224 CFAP45Q9UL16 551 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 CCDC9Q9Y3X0 531 aaKnown RBP7.82□□□□□ -1.16
USP28-206ENST00000538224 NDUFB9Q9Y6M9 179 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 LAMB1P07942 1786 aa7.82□□□□□ -1.16
USP28-206ENST00000538224 CNTNAP4Q9C0A0 1308 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 CCDC88AQ3V6T2 1871 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 DUOX1Q9NRD9 1551 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 SBF2Q86WG5 1849 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 GOLGA6L4A6NEF3 574 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 GPAA1O43292 621 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 CAMTA2O94983 1202 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 FGFR2P21802 821 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 MCM5P33992 734 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 ADD2P35612 726 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 ZAP70P43403 619 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms