RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 TRMT112Q9UI30 125 aaKnown RBP12.87□□□□□ -0.35
CLIP1-210ENST00000538120 TAF5LO75529 589 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 AK2P54819 239 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 FNBP4Q8N3X1 1017 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-210ENST00000538120 KBTBD3Q8NAB2 608 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 INTS4Q96HW7 963 aaKnown RBP12.86□□□□□ -0.35
CLIP1-210ENST00000538120 TM6SF1Q9BZW5 370 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 ZSWIM6Q9HCJ5 1215 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 RIPOR2Q9Y4F9 1068 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 NUP98P52948 1817 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 CICQ96RK0 1608 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-210ENST00000538120 SLC27A2O14975 620 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 CAMTA2O94983 1202 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 ITGA6P23229 1130 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 ADORA1P30542 326 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 COL9A3Q14050 684 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-210ENST00000538120 KLHL40Q2TBA0 621 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 RUFY3Q7L099 469 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 CHAMP1Q96JM3 812 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 RIC1Q4ADV7 1423 aa12.86□□□□□ -0.35
CLIP1-210ENST00000538120 CASTP20810 708 aaKnown RBP12.85□□□□□ -0.35
CLIP1-210ENST00000538120 SUSD4Q5VX71 490 aa12.85□□□□□ -0.35
CLIP1-210ENST00000538120 SEC62Q99442 399 aaKnown RBP12.85□□□□□ -0.35
CLIP1-210ENST00000538120 TAF6LQ9Y6J9 622 aa12.85□□□□□ -0.35
CLIP1-210ENST00000538120 GOLIM4O00461 696 aa12.85□□□□□ -0.35
CLIP1-210ENST00000538120 PDE8AO60658 829 aa12.85□□□□□ -0.35
CLIP1-210ENST00000538120 NCLP19338 710 aaKnown RBP12.85□□□□□ -0.35
CLIP1-210ENST00000538120 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLIP1-210ENST00000538120 SMARCC1Q92922 1105 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-210ENST00000538120 JAKMIP1Q96N16 626 aaKnown RBP12.85□□□□□ -0.35
CLIP1-210ENST00000538120 PAG1Q9NWQ8 432 aa12.85□□□□□ -0.35
CLIP1-210ENST00000538120 GOLGA6L22H0YM25 854 aa12.84□□□□□ -0.35
CLIP1-210ENST00000538120 SLFNL1Q499Z3 407 aa12.84□□□□□ -0.35
CLIP1-210ENST00000538120 USPL1Q5W0Q7 1092 aa12.84□□□□□ -0.35
CLIP1-210ENST00000538120 CAVIN1Q6NZI2 390 aaKnown RBP12.84□□□□□ -0.35
CLIP1-210ENST00000538120 CCDC129Q6ZRS4 1044 aa12.84□□□□□ -0.35
CLIP1-210ENST00000538120 PTF1AQ7RTS3 328 aa12.84□□□□□ -0.35
CLIP1-210ENST00000538120 XAGE2Q96GT9 111 aa12.84□□□□□ -0.35
CLIP1-210ENST00000538120 BCCIPQ9P287 314 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLIP1-210ENST00000538120 RPAP1Q9BWH6 1393 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-210ENST00000538120 IFIT1P09914 478 aaKnown RBP12.84□□□□□ -0.35
CLIP1-210ENST00000538120 PTMSP20962 102 aa12.84□□□□□ -0.35
CLIP1-210ENST00000538120 ASTLQ6HA08 431 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-210ENST00000538120 BBXQ8WY36 941 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-210ENST00000538120 PPP1R9BQ96SB3 815 aa12.84□□□□□ -0.35
CLIP1-210ENST00000538120 LARP6Q9BRS8 491 aaKnown RBP12.84□□□□□ -0.35
CLIP1-210ENST00000538120 AKAP2Q9Y2D5 859 aa12.84□□□□□ -0.35
CLIP1-210ENST00000538120 MYH14Q7Z406 1995 aaKnown RBP12.83□□□□□ -0.35
CLIP1-210ENST00000538120 ANKRD18BA2A2Z9 1011 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 CCDC173Q0VFZ6 552 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 MCMDC2Q4G0Z9 681 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 VPS53Q5VIR6 699 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 VGLL2Q8N8G2 317 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 ATMINO43313 823 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-210ENST00000538120 ZKSCAN1P17029 563 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-210ENST00000538120 KCNJ4P48050 445 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 ATN1P54259 1190 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-210ENST00000538120 TSGA10IPQ3SY00 556 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 LDHAL6AQ6ZMR3 332 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 PDRG1Q9NUG6 133 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 LMBRD1Q9NUN5 540 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 LIMCH1Q9UPQ0 1083 aa12.83□□□□□ -0.36
CLIP1-210ENST00000538120 SH3TC1Q8TE82 1336 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 LARGE1O95461 756 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 TICAM2Q86XR7 235 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 LINC00116Q8NCU8 138 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 CYP46A1Q9Y6A2 500 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 RRP9O43818 475 aaKnown RBP12.82□□□□□ -0.36
CLIP1-210ENST00000538120 BRD1O95696 1058 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 HCLS1P14317 486 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-210ENST00000538120 SCARF1Q14162 830 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 ZSCAN23Q3MJ62 389 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 METTL24Q5JXM2 366 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 ZMYM1Q5SVZ6 1142 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 AK7Q96M32 723 aa12.82□□□□□ -0.36
CLIP1-210ENST00000538120 UTP14AQ9BVJ6 771 aaKnown RBP12.81□□□□□ -0.36
CLIP1-210ENST00000538120 HELLSQ9NRZ9 838 aa12.81□□□□□ -0.36
CLIP1-210ENST00000538120 RBM27Q9P2N5 1060 aaKnown RBP12.81□□□□□ -0.36
CLIP1-210ENST00000538120 POTEIP0CG38 1075 aa12.81□□□□□ -0.36
CLIP1-210ENST00000538120 KCNQ4P56696 695 aa12.81□□□□□ -0.36
CLIP1-210ENST00000538120 ATP2B3Q16720 1220 aa12.81□□□□□ -0.36
CLIP1-210ENST00000538120 CCDC158Q5M9N0 1113 aa12.81□□□□□ -0.36
CLIP1-210ENST00000538120 TTC39AQ5SRH9 613 aa12.81□□□□□ -0.36
CLIP1-210ENST00000538120 RBSNQ9H1K0 784 aa12.81□□□□□ -0.36
CLIP1-210ENST00000538120 USP21Q9UK80 565 aa12.81□□□□□ -0.36
CLIP1-210ENST00000538120 SPATA31A6Q5VVP1 1343 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 FAM177BA6PVY3 158 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 RNF113AO15541 343 aaKnown RBP12.8□□□□□ -0.36
CLIP1-210ENST00000538120 NTSR2O95665 410 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 ST3GAL1Q11201 340 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 PARP10Q53GL7 1025 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 ZSCAN30Q86W11 494 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 EFCAB3Q8N7B9 438 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 CNNM1Q9NRU3 951 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 HMG20BQ9P0W2 317 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 COL5A3P25940 1745 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-210ENST00000538120 LRP5O75197 1615 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 PRPF40AO75400 957 aaKnown RBP12.8□□□□□ -0.36
CLIP1-210ENST00000538120 PSMA5P28066 241 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 ZNF445P59923 1031 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms