RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 UBASH3BQ8TF42 649 aa5.9□□□□□ -1.46
SKA3-207ENST00000536239 KLHDC7BQ96G42 594 aa5.9□□□□□ -1.46
SKA3-207ENST00000536239 SEC31BQ9NQW1 1179 aa5.9□□□□□ -1.46
SKA3-207ENST00000536239 SH2B1Q9NRF2 756 aaPredicted RBP5.9□□□□□ -1.46
SKA3-207ENST00000536239 KIF4AO95239 1232 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 EPHA1P21709 976 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 SCNN1AP37088 669 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 PREPP48147 710 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 TTC39BQ5VTQ0 682 aaPredicted RBP5.89□□□□□ -1.47
SKA3-207ENST00000536239 ANKRD34AQ69YU3 496 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 PROSER2Q86WR7 435 aaPredicted RBP5.89□□□□□ -1.47
SKA3-207ENST00000536239 ABI1Q8IZP0 508 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 PIK3R5Q8WYR1 880 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 CLUAP1Q96AJ1 413 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 CALR3Q96L12 384 aaKnown RBP5.89□□□□□ -1.47
SKA3-207ENST00000536239 PBX4Q9BYU1 374 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 SAP130Q9H0E3 1048 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 HIF3AQ9Y2N7 669 aa5.89□□□□□ -1.47
SKA3-207ENST00000536239 A6NJR5 290 aa5.88□□□□□ -1.47
SKA3-207ENST00000536239 SLC24A1O60721 1099 aa5.88□□□□□ -1.47
SKA3-207ENST00000536239 JAG1P78504 1218 aa5.88□□□□□ -1.47
SKA3-207ENST00000536239 FAM26DQ5JW98 314 aa5.88□□□□□ -1.47
SKA3-207ENST00000536239 ADAM19Q9H013 955 aa5.88□□□□□ -1.47
SKA3-207ENST00000536239 FAM13BQ9NYF5 915 aa5.88□□□□□ -1.47
SKA3-207ENST00000536239 PIM2Q9P1W9 311 aa5.88□□□□□ -1.47
SKA3-207ENST00000536239 PTPRAP18433 802 aa5.87□□□□□ -1.47
SKA3-207ENST00000536239 OGFOD2Q6N063 350 aa5.87□□□□□ -1.47
SKA3-207ENST00000536239 C16orf46Q6P387 395 aa5.87□□□□□ -1.47
SKA3-207ENST00000536239 CEP120Q8N960 986 aa5.87□□□□□ -1.47
SKA3-207ENST00000536239 COL26A1Q96A83 441 aa5.87□□□□□ -1.47
SKA3-207ENST00000536239 MFSD14AQ96MC6 490 aa5.87□□□□□ -1.47
SKA3-207ENST00000536239 POP1Q99575 1024 aaKnown RBP5.87□□□□□ -1.47
SKA3-207ENST00000536239 RNF208Q9H0X6 261 aa5.87□□□□□ -1.47
SKA3-207ENST00000536239 FNDC3AQ9Y2H6 1198 aaKnown RBP5.87□□□□□ -1.47
SKA3-207ENST00000536239 FAM177BA6PVY3 158 aa5.86□□□□□ -1.47
SKA3-207ENST00000536239 GIMAP7Q8NHV1 300 aa5.86□□□□□ -1.47
SKA3-207ENST00000536239 WNT8BQ93098 351 aa5.86□□□□□ -1.47
SKA3-207ENST00000536239 PRIMPOLQ96LW4 560 aa5.86□□□□□ -1.47
SKA3-207ENST00000536239 OSGEPQ9NPF4 335 aa5.86□□□□□ -1.47
SKA3-207ENST00000536239 ABI2Q9NYB9 513 aaPredicted RBP5.86□□□□□ -1.47
SKA3-207ENST00000536239 H3BRJ5 948 aa5.85□□□□□ -1.47
SKA3-207ENST00000536239 CYP2E1P05181 493 aaPredicted RBP5.85□□□□□ -1.47
SKA3-207ENST00000536239 PIP4K2BP78356 416 aa5.85□□□□□ -1.47
SKA3-207ENST00000536239 FDX2Q6P4F2 183 aa5.85□□□□□ -1.47
SKA3-207ENST00000536239 NCAPG2Q86XI2 1143 aa5.85□□□□□ -1.47
SKA3-207ENST00000536239 RUSC1Q9BVN2 902 aa5.85□□□□□ -1.47
SKA3-207ENST00000536239 KRTAP4-9Q9BYQ8 210 aa5.85□□□□□ -1.47
SKA3-207ENST00000536239 ZMYND15Q9H091 742 aa5.85□□□□□ -1.47
SKA3-207ENST00000536239 ATG3Q9NT62 314 aa5.85□□□□□ -1.47
SKA3-207ENST00000536239 ANGEL1Q9UNK9 670 aaKnown RBP5.85□□□□□ -1.47
SKA3-207ENST00000536239 LEMD3Q9Y2U8 911 aa5.85□□□□□ -1.47
SKA3-207ENST00000536239 MEGF11A6BM72 1044 aa5.84□□□□□ -1.47
SKA3-207ENST00000536239 TNFRSF10BO14763 440 aa5.84□□□□□ -1.47
SKA3-207ENST00000536239 F13BP05160 661 aa5.84□□□□□ -1.47
SKA3-207ENST00000536239 MAP4P27816 1152 aaKnown RBP5.84□□□□□ -1.47
SKA3-207ENST00000536239 ZAP70P43403 619 aa5.84□□□□□ -1.47
SKA3-207ENST00000536239 CABP4P57796 275 aa5.84□□□□□ -1.47
SKA3-207ENST00000536239 NLRP12P59046 1061 aa5.84□□□□□ -1.47
SKA3-207ENST00000536239 MSMPQ1L6U9 139 aa5.84□□□□□ -1.47
SKA3-207ENST00000536239 CBLL1Q75N03 491 aa5.84□□□□□ -1.47
SKA3-207ENST00000536239 CCDC39Q9UFE4 941 aa5.84□□□□□ -1.47
SKA3-207ENST00000536239 GAS2O43903 313 aaKnown RBP5.83□□□□□ -1.48
SKA3-207ENST00000536239 PRMT3O60678 531 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 PRNPP04156 253 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 C8AP07357 584 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 FOSL1P15407 271 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 OCLNQ16625 522 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 SWI5Q1ZZU3 235 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 SGO2Q562F6 1265 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 FBXL6Q8N531 539 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 POU5F2Q8N7G0 328 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 GPR152Q8TDT2 470 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 ASIC4Q96FT7 647 aa5.83□□□□□ -1.48
SKA3-207ENST00000536239 NOVA2Q9UNW9 492 aaKnown RBP5.83□□□□□ -1.48
SKA3-207ENST00000536239 ACIN1Q9UKV3 1341 aaKnown RBP5.82□□□□□ -1.48
SKA3-207ENST00000536239 RFX1P22670 979 aa5.82□□□□□ -1.48
SKA3-207ENST00000536239 CPSF6Q16630 551 aaKnown RBP eCLIP5.82□□□□□ -1.48
SKA3-207ENST00000536239 CDCA8Q53HL2 280 aa5.82□□□□□ -1.48
SKA3-207ENST00000536239 CFAP70Q5T0N1 1121 aa5.82□□□□□ -1.48
SKA3-207ENST00000536239 NFXL1Q6ZNB6 911 aa5.82□□□□□ -1.48
SKA3-207ENST00000536239 FBXL18Q96ME1 805 aa5.82□□□□□ -1.48
SKA3-207ENST00000536239 OSBPL1AQ9BXW6 950 aa5.82□□□□□ -1.48
SKA3-207ENST00000536239 NFKBIEO00221 500 aa5.81□□□□□ -1.48
SKA3-207ENST00000536239 RXRBP28702 533 aa5.81□□□□□ -1.48
SKA3-207ENST00000536239 CAPN12Q6ZSI9 719 aa5.81□□□□□ -1.48
SKA3-207ENST00000536239 SLC7A3Q8WY07 619 aa5.81□□□□□ -1.48
SKA3-207ENST00000536239 SALL4Q9UJQ4 1053 aa5.81□□□□□ -1.48
SKA3-207ENST00000536239 ZBTB39O15060 712 aa5.8□□□□□ -1.48
SKA3-207ENST00000536239 JUNBP17275 347 aaPredicted RBP5.8□□□□□ -1.48
SKA3-207ENST00000536239 ITGB5P18084 799 aa5.8□□□□□ -1.48
SKA3-207ENST00000536239 ARL4DP49703 201 aa5.8□□□□□ -1.48
SKA3-207ENST00000536239 NAA30Q147X3 362 aaPredicted RBP5.8□□□□□ -1.48
SKA3-207ENST00000536239 NUTM2GQ5VZR2 741 aa5.8□□□□□ -1.48
SKA3-207ENST00000536239 PDE12Q6L8Q7 609 aaKnown RBP5.8□□□□□ -1.48
SKA3-207ENST00000536239 VSIG10LQ86VR7 867 aa5.8□□□□□ -1.48
SKA3-207ENST00000536239 TP53INP2Q8IXH6 220 aa5.8□□□□□ -1.48
SKA3-207ENST00000536239 SHISA5Q8N114 240 aa5.8□□□□□ -1.48
SKA3-207ENST00000536239 C12orf50Q8NA57 414 aaPredicted RBP5.8□□□□□ -1.48
SKA3-207ENST00000536239 TMPRSS13Q9BYE2 586 aa5.8□□□□□ -1.48
SKA3-207ENST00000536239 ELP3Q9H9T3 547 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms