RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 NUP155O75694 1391 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 SLC35F4A4IF30 521 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 ARHGAP4P98171 946 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 EHHADHQ08426 723 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 ATCAYQ86WG3 371 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 RGL4Q8IZJ4 473 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 ZNF280CQ8ND82 737 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 TRERF1Q96PN7 1200 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 CAMSAP1Q5T5Y3 1602 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 MROH2AA6NES4 1674 aa8.53□□□□□ -1.04
USP28-202ENST00000535607 CDC14CA4D256 554 aa8.53□□□□□ -1.04
USP28-202ENST00000535607 ATXN7O15265 892 aaPredicted RBP8.53□□□□□ -1.04
USP28-202ENST00000535607 CMTR1Q8N1G2 835 aaKnown RBP8.53□□□□□ -1.04
USP28-202ENST00000535607 DMRTB1Q96MA1 342 aa8.53□□□□□ -1.04
USP28-202ENST00000535607 BRD7Q9NPI1 651 aa8.53□□□□□ -1.04
USP28-202ENST00000535607 POLIQ9UNA4 740 aa8.53□□□□□ -1.04
USP28-202ENST00000535607 SIGLEC1Q9BZZ2 1709 aa8.53□□□□□ -1.04
USP28-202ENST00000535607 ARHGAP31Q2M1Z3 1444 aa8.53□□□□□ -1.04
USP28-202ENST00000535607 CEP152O94986 1710 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 SENP3-EIF4A1A0A087X0R7 540 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 ANKRD33BA6NCL7 494 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 KHNYNO15037 678 aaKnown RBP8.52□□□□□ -1.05
USP28-202ENST00000535607 ITGA6P23229 1130 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 SAMD5Q5TGI4 173 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 TRIM22Q8IYM9 498 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 NUDT16Q96DE0 195 aaKnown RBP8.52□□□□□ -1.05
USP28-202ENST00000535607 ASB16Q96NS5 453 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 RBCK1Q9BYM8 510 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 CCDC87Q9NVE4 849 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 PCDHGC4Q9Y5F7 938 aa8.52□□□□□ -1.05
USP28-202ENST00000535607 TRPM2O94759 1503 aa8.51□□□□□ -1.05
USP28-202ENST00000535607 E9PCH4 1651 aa8.51□□□□□ -1.05
USP28-202ENST00000535607 ZBTB39O15060 712 aa8.51□□□□□ -1.05
USP28-202ENST00000535607 KIF3BO15066 747 aa8.51□□□□□ -1.05
USP28-202ENST00000535607 SNRPBP14678 240 aaKnown RBP8.51□□□□□ -1.05
USP28-202ENST00000535607 ZCCHC2Q9C0B9 1178 aaKnown RBP8.51□□□□□ -1.05
USP28-202ENST00000535607 BCS1LQ9Y276 419 aa8.51□□□□□ -1.05
USP28-202ENST00000535607 SPHKAPQ2M3C7 1700 aa8.51□□□□□ -1.05
USP28-202ENST00000535607 DCDC2BA2VCK2 349 aa8.5□□□□□ -1.05
USP28-202ENST00000535607 UBAP1LF5GYI3 381 aa8.5□□□□□ -1.05
USP28-202ENST00000535607 FZD6O60353 706 aa8.5□□□□□ -1.05
USP28-202ENST00000535607 PDGFAP04085 211 aa8.5□□□□□ -1.05
USP28-202ENST00000535607 FGD1P98174 961 aa8.5□□□□□ -1.05
USP28-202ENST00000535607 TYRO3Q06418 890 aa8.5□□□□□ -1.05
USP28-202ENST00000535607 NEURL4Q96JN8 1562 aa8.5□□□□□ -1.05
USP28-202ENST00000535607 PNMA5Q96PV4 448 aa8.5□□□□□ -1.05
USP28-202ENST00000535607 RTCBQ9Y3I0 505 aaKnown RBP8.5□□□□□ -1.05
USP28-202ENST00000535607 FAM157BP0CG42 384 aa8.49□□□□□ -1.05
USP28-202ENST00000535607 FAM43AQ8N2R8 423 aa8.49□□□□□ -1.05
USP28-202ENST00000535607 C7orf43Q8WVR3 580 aa8.49□□□□□ -1.05
USP28-202ENST00000535607 MPHOSPH9Q99550 1183 aa8.49□□□□□ -1.05
USP28-202ENST00000535607 KCNH4Q9UQ05 1017 aa8.49□□□□□ -1.05
USP28-202ENST00000535607 FER1L4A9Z1Z3 1794 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 PTPRTO14522 1441 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 INPP5BP32019 993 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 ATP2B2Q01814 1243 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 PLCB3Q01970 1234 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 SV2AQ7L0J3 742 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 TMC7Q7Z402 723 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 ZNF438Q7Z4V0 828 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 BACH2Q9BYV9 841 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 CLTCQ00610 1675 aaKnown RBP8.48□□□□□ -1.05
USP28-202ENST00000535607 ANKRD30BQ9BXX2 1392 aa8.48□□□□□ -1.05
USP28-202ENST00000535607 NPATQ14207 1427 aa8.47□□□□□ -1.05
USP28-202ENST00000535607 XYLBO75191 536 aa8.47□□□□□ -1.05
USP28-202ENST00000535607 LAMC2Q13753 1193 aa8.47□□□□□ -1.05
USP28-202ENST00000535607 ECM1Q16610 540 aa8.47□□□□□ -1.05
USP28-202ENST00000535607 ZNF326Q5BKZ1 582 aaKnown RBP8.47□□□□□ -1.05
USP28-202ENST00000535607 NPM2Q86SE8 214 aaKnown RBP8.47□□□□□ -1.05
USP28-202ENST00000535607 RGS22Q8NE09 1264 aa8.47□□□□□ -1.05
USP28-202ENST00000535607 GTPBP3Q969Y2 492 aaKnown RBP8.47□□□□□ -1.05
USP28-202ENST00000535607 BCL2L13Q9BXK5 485 aa8.47□□□□□ -1.05
USP28-202ENST00000535607 MARK1Q9P0L2 795 aa8.47□□□□□ -1.05
USP28-202ENST00000535607 ATXN7L1Q9ULK2 861 aaPredicted RBP8.47□□□□□ -1.05
USP28-202ENST00000535607 SPATA31D1Q6ZQQ2 1576 aa8.47□□□□□ -1.05
USP28-202ENST00000535607 PIK3C2BO00750 1634 aa8.47□□□□□ -1.05
USP28-202ENST00000535607 ADAMTSL3P82987 1691 aa8.46□□□□□ -1.05
USP28-202ENST00000535607 PREX1Q8TCU6 1659 aa8.46□□□□□ -1.05
USP28-202ENST00000535607 PPFIA3O75145 1194 aa8.46□□□□□ -1.06
USP28-202ENST00000535607 MAPK8P45983 427 aa8.46□□□□□ -1.06
USP28-202ENST00000535607 RRP1P56182 461 aaKnown RBP8.46□□□□□ -1.06
USP28-202ENST00000535607 RALBP1Q15311 655 aa8.46□□□□□ -1.06
USP28-202ENST00000535607 DBN1Q16643 649 aa8.46□□□□□ -1.06
USP28-202ENST00000535607 EAPPQ56P03 285 aaPredicted RBP8.46□□□□□ -1.06
USP28-202ENST00000535607 FAM26DQ5JW98 314 aa8.46□□□□□ -1.06
USP28-202ENST00000535607 FOXD4L4Q8WXT5 416 aaPredicted RBP8.46□□□□□ -1.06
USP28-202ENST00000535607 ZNF837Q96EG3 531 aaPredicted RBP8.46□□□□□ -1.06
USP28-202ENST00000535607 C11orf16Q9NQ32 467 aa8.46□□□□□ -1.06
USP28-202ENST00000535607 DMGDHQ9UI17 866 aaKnown RBP8.46□□□□□ -1.06
USP28-202ENST00000535607 AMOTL2Q9Y2J4 779 aa8.46□□□□□ -1.06
USP28-202ENST00000535607 BRD4O60885 1362 aaPredicted RBP8.46□□□□□ -1.06
USP28-202ENST00000535607 CCDC144AA2RUR9 1427 aa8.46□□□□□ -1.06
USP28-202ENST00000535607 NOS1P29475 1434 aa8.46□□□□□ -1.06
USP28-202ENST00000535607 OPLAHO14841 1288 aa8.45□□□□□ -1.06
USP28-202ENST00000535607 EIF5BO60841 1220 aaKnown RBP8.45□□□□□ -1.06
USP28-202ENST00000535607 MAPTP10636 758 aaKnown RBP8.45□□□□□ -1.06
USP28-202ENST00000535607 L1TD1Q5T7N2 865 aaKnown RBP8.45□□□□□ -1.06
USP28-202ENST00000535607 TTC39BQ5VTQ0 682 aaPredicted RBP8.45□□□□□ -1.06
USP28-202ENST00000535607 PDE12Q6L8Q7 609 aaKnown RBP8.45□□□□□ -1.06
USP28-202ENST00000535607 DNAJC14Q6Y2X3 702 aaPredicted RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms