RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 RABEP2Q9H5N1 569 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 L1RE1Q9UN81 338 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 ASXL2Q76L83 1435 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 CCP110O43303 1012 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 KINO60870 393 aaKnown RBP16.32■□□□□ 0.2
PCF11-204ENST00000530660 EIF3JO75822 258 aaKnown RBP16.32■□□□□ 0.2
PCF11-204ENST00000530660 LMOD1P29536 600 aaPredicted RBP16.32■□□□□ 0.2
PCF11-204ENST00000530660 MAP9Q49MG5 647 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 HSP90B2PQ58FF3 399 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 PPP2R2CQ9Y2T4 447 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 RAB11FIP3O75154 756 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 FOSBP53539 338 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 JAKMIP3Q5VZ66 844 aa16.32■□□□□ 0.2
PCF11-204ENST00000530660 CDK12Q9NYV4 1490 aaPredicted RBP16.31■□□□□ 0.2
PCF11-204ENST00000530660 BIN1O00499 593 aa16.31■□□□□ 0.2
PCF11-204ENST00000530660 JAK2O60674 1132 aa16.31■□□□□ 0.2
PCF11-204ENST00000530660 BIRC2Q13490 618 aa16.31■□□□□ 0.2
PCF11-204ENST00000530660 NAT10Q9H0A0 1025 aaKnown RBP16.31■□□□□ 0.2
PCF11-204ENST00000530660 SLC24A3Q9HC58 644 aa16.31■□□□□ 0.2
PCF11-204ENST00000530660 PPP1R12AO14974 1030 aaPredicted RBP16.31■□□□□ 0.2
PCF11-204ENST00000530660 CTAGE5O15320 804 aa16.31■□□□□ 0.2
PCF11-204ENST00000530660 ATP1A3P13637 1013 aa16.31■□□□□ 0.2
PCF11-204ENST00000530660 IRX2Q9BZI1 471 aaPredicted RBP16.31■□□□□ 0.2
PCF11-204ENST00000530660 IBSPP21815 317 aaPredicted RBP16.3■□□□□ 0.2
PCF11-204ENST00000530660 GRIPAP1Q4V328 841 aa16.3■□□□□ 0.2
PCF11-204ENST00000530660 GBP6Q6ZN66 633 aa16.3■□□□□ 0.2
PCF11-204ENST00000530660 TFRCP02786 760 aaKnown RBP16.3■□□□□ 0.2
PCF11-204ENST00000530660 CCT5P48643 541 aa16.3■□□□□ 0.2
PCF11-204ENST00000530660 CHMP4BP1P59074 171 aa16.3■□□□□ 0.2
PCF11-204ENST00000530660 MAP2K1Q02750 393 aaPredicted RBP16.3■□□□□ 0.2
PCF11-204ENST00000530660 CASP8Q14790 479 aa16.3■□□□□ 0.2
PCF11-204ENST00000530660 CCDC73Q6ZRK6 1079 aa16.3■□□□□ 0.2
PCF11-204ENST00000530660 GIMAP7Q8NHV1 300 aa16.3■□□□□ 0.2
PCF11-204ENST00000530660 PI4K2BQ8TCG2 481 aa16.3■□□□□ 0.2
PCF11-204ENST00000530660 KIFC2Q96AC6 838 aa16.3■□□□□ 0.2
PCF11-204ENST00000530660 RHOXF2BP0C7M4 288 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 CCT4P50991 539 aaKnown RBP16.29■□□□□ 0.2
PCF11-204ENST00000530660 SULT6B1Q6IMI4 303 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 RHOXF2Q9BQY4 288 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 SIGLEC1Q9BZZ2 1709 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 SCRN1Q12765 414 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 RESTQ13127 1097 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 FAM71BQ8TC56 605 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 DPF2Q92785 391 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 FAM169AQ9Y6X4 670 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 WDHD1O75717 1129 aaPredicted RBP16.29■□□□□ 0.2
PCF11-204ENST00000530660 KARSQ15046 597 aaKnown RBP16.29■□□□□ 0.2
PCF11-204ENST00000530660 TTC19Q6DKK2 380 aaPredicted RBP16.29■□□□□ 0.2
PCF11-204ENST00000530660 WAPLQ7Z5K2 1190 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 ERC1Q8IUD2 1116 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 CCDC12Q8WUD4 166 aaPredicted RBP16.29■□□□□ 0.2
PCF11-204ENST00000530660 BRF1Q92994 677 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 SDF4Q9BRK5 362 aa16.29■□□□□ 0.2
PCF11-204ENST00000530660 LRRIQ3A6PVS8 624 aaPredicted RBP16.28■□□□□ 0.2
PCF11-204ENST00000530660 HNRNPLLQ8WVV9 542 aaKnown RBP16.28■□□□□ 0.2
PCF11-204ENST00000530660 FRMPD1Q5SYB0 1578 aa16.28■□□□□ 0.2
PCF11-204ENST00000530660 ZSCAN12O43309 604 aa16.28■□□□□ 0.2
PCF11-204ENST00000530660 RNF40O75150 1001 aa16.28■□□□□ 0.2
PCF11-204ENST00000530660 PAX7P23759 505 aa16.28■□□□□ 0.2
PCF11-204ENST00000530660 NAIF1Q69YI7 327 aaPredicted RBP16.28■□□□□ 0.2
PCF11-204ENST00000530660 MIEF2Q96C03 454 aa16.28■□□□□ 0.2
PCF11-204ENST00000530660 POGZQ7Z3K3 1410 aa16.28■□□□□ 0.2
PCF11-204ENST00000530660 CLTCQ00610 1675 aaKnown RBP16.28■□□□□ 0.2
PCF11-204ENST00000530660 NEBLO76041 1014 aa16.27■□□□□ 0.2
PCF11-204ENST00000530660 VSNL1P62760 191 aa16.27■□□□□ 0.2
PCF11-204ENST00000530660 FANCCQ00597 558 aa16.27■□□□□ 0.2
PCF11-204ENST00000530660 FSIP1Q8NA03 581 aa16.27■□□□□ 0.2
PCF11-204ENST00000530660 FAXDC2Q96IV6 333 aa16.27■□□□□ 0.2
PCF11-204ENST00000530660 GNL3LQ9NVN8 582 aaKnown RBP16.27■□□□□ 0.2
PCF11-204ENST00000530660 USP8P40818 1118 aa16.27■□□□□ 0.19
PCF11-204ENST00000530660 ATP8B2P98198 1209 aa16.27■□□□□ 0.19
PCF11-204ENST00000530660 TOGARAM2Q6ZUX3 1019 aa16.27■□□□□ 0.19
PCF11-204ENST00000530660 ENGASEQ8NFI3 743 aa16.27■□□□□ 0.19
PCF11-204ENST00000530660 DESI2Q9BSY9 194 aa16.27■□□□□ 0.19
PCF11-204ENST00000530660 CD248Q9HCU0 757 aa16.27■□□□□ 0.19
PCF11-204ENST00000530660 TAF6LQ9Y6J9 622 aa16.27■□□□□ 0.19
PCF11-204ENST00000530660 H3BQV1 296 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 IFFO2Q5TF58 517 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 CNTROBQ8N137 903 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 EHD4Q9H223 541 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 CFAP45Q9UL16 551 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 PIK3C2BO00750 1634 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 ATP2B2Q01814 1243 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 TRDNQ13061 729 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 AFAP1L1Q8TED9 768 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 RIN2Q8WYP3 895 aaPredicted RBP16.26■□□□□ 0.19
PCF11-204ENST00000530660 TM6SF1Q9BZW5 370 aa16.26■□□□□ 0.19
PCF11-204ENST00000530660 TMEM232C9JQI7 657 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 ERLIN1O75477 346 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 USP5P45974 858 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 FAM160A1Q05DH4 1040 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 NECTIN2Q92692 538 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 MYO1FO00160 1098 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 CUTAO60888 179 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 NCAPHQ15003 741 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 SRGAP1Q7Z6B7 1085 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 N4BP2L2Q92802 583 aaPredicted RBP16.25■□□□□ 0.19
PCF11-204ENST00000530660 HECW2Q9P2P5 1572 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 ZKSCAN1P17029 563 aaPredicted RBP16.25■□□□□ 0.19
PCF11-204ENST00000530660 ELF1P32519 619 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms