RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 KIAA0319Q5VV43 1072 aa8.26□□□□□ -1.09
CD44-230ENST00000528922 CEP135Q66GS9 1140 aa8.26□□□□□ -1.09
CD44-230ENST00000528922 LINC00114Q6XXX2 140 aa8.26□□□□□ -1.09
CD44-230ENST00000528922 POP1Q99575 1024 aaKnown RBP8.26□□□□□ -1.09
CD44-230ENST00000528922 PRDM6Q9NQX0 595 aa8.26□□□□□ -1.09
CD44-230ENST00000528922 RNF19AQ9NV58 838 aa8.26□□□□□ -1.09
CD44-230ENST00000528922 TRIM33Q9UPN9 1127 aa8.26□□□□□ -1.09
CD44-230ENST00000528922 LILRB5O75023 590 aa8.25□□□□□ -1.09
CD44-230ENST00000528922 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.25□□□□□ -1.09
CD44-230ENST00000528922 ALG1LQ6GMV1 187 aa8.25□□□□□ -1.09
CD44-230ENST00000528922 NXPE3Q969Y0 559 aa8.25□□□□□ -1.09
CD44-230ENST00000528922 PDE2AO00408 941 aaPredicted RBP8.24□□□□□ -1.09
CD44-230ENST00000528922 SMNDC1O75940 238 aaKnown RBP eCLIP8.24□□□□□ -1.09
CD44-230ENST00000528922 ATP2B2Q01814 1243 aa8.24□□□□□ -1.09
CD44-230ENST00000528922 TMEM102Q8N9M5 508 aaPredicted RBP8.24□□□□□ -1.09
CD44-230ENST00000528922 FBF1Q8TES7 1133 aa8.24□□□□□ -1.09
CD44-230ENST00000528922 TCF12Q99081 682 aa8.24□□□□□ -1.09
CD44-230ENST00000528922 GADD45BO75293 160 aaPredicted RBP8.23□□□□□ -1.09
CD44-230ENST00000528922 PRPF40AO75400 957 aaKnown RBP8.23□□□□□ -1.09
CD44-230ENST00000528922 NID1P14543 1247 aa8.23□□□□□ -1.09
CD44-230ENST00000528922 GDF6Q6KF10 455 aaPredicted RBP8.23□□□□□ -1.09
CD44-230ENST00000528922 DUSP9Q99956 384 aaKnown RBP8.23□□□□□ -1.09
CD44-230ENST00000528922 BCL2L13Q9BXK5 485 aa8.23□□□□□ -1.09
CD44-230ENST00000528922 NLRP2Q9NX02 1062 aa8.23□□□□□ -1.09
CD44-230ENST00000528922 CNTNAP5Q8WYK1 1306 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 METTL12A8MUP2 240 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 BAG6P46379 1132 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 GRM2Q14416 872 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 ILDR2Q71H61 639 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 CCNJLQ8IV13 435 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 FOXD4L4Q8WXT5 416 aaPredicted RBP8.22□□□□□ -1.09
CD44-230ENST00000528922 TRIM11Q96F44 468 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 BHLHE41Q9C0J9 482 aaPredicted RBP8.22□□□□□ -1.09
CD44-230ENST00000528922 LACRTQ9GZZ8 138 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 EHD4Q9H223 541 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 SUV39H2Q9H5I1 410 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 LIN7BQ9HAP6 207 aa8.22□□□□□ -1.09
CD44-230ENST00000528922 GLIS3Q8NEA6 775 aa8.21□□□□□ -1.1
CD44-230ENST00000528922 GIPC2Q8TF65 315 aa8.21□□□□□ -1.1
CD44-230ENST00000528922 OSBPL7Q9BZF2 842 aa8.21□□□□□ -1.1
CD44-230ENST00000528922 PARP2Q9UGN5 583 aa8.21□□□□□ -1.1
CD44-230ENST00000528922 GRIA4P48058 902 aa8.2□□□□□ -1.1
CD44-230ENST00000528922 SPRED3Q2MJR0 410 aa8.2□□□□□ -1.1
CD44-230ENST00000528922 NXPE4Q6UWF7 544 aa8.2□□□□□ -1.1
CD44-230ENST00000528922 IL22RA1Q8N6P7 574 aa8.2□□□□□ -1.1
CD44-230ENST00000528922 BCO2Q9BYV7 579 aa8.2□□□□□ -1.1
CD44-230ENST00000528922 ADAM19Q9H013 955 aa8.2□□□□□ -1.1
CD44-230ENST00000528922 SH2B1Q9NRF2 756 aaPredicted RBP8.2□□□□□ -1.1
CD44-230ENST00000528922 MKL2Q9ULH7 1088 aa8.2□□□□□ -1.1
CD44-230ENST00000528922 ZNF16P17020 682 aaPredicted RBP8.19□□□□□ -1.1
CD44-230ENST00000528922 PTPRAP18433 802 aa8.19□□□□□ -1.1
CD44-230ENST00000528922 MSL1Q68DK7 614 aa8.19□□□□□ -1.1
CD44-230ENST00000528922 DMRTC2Q8IXT2 367 aaPredicted RBP8.19□□□□□ -1.1
CD44-230ENST00000528922 BEND7Q8N7W2 519 aaPredicted RBP8.19□□□□□ -1.1
CD44-230ENST00000528922 ASAP3Q8TDY4 903 aa8.19□□□□□ -1.1
CD44-230ENST00000528922 ABCB6Q9NP58 842 aa8.19□□□□□ -1.1
CD44-230ENST00000528922 CDC27P30260 824 aa8.18□□□□□ -1.1
CD44-230ENST00000528922 GNA15P30679 374 aa8.18□□□□□ -1.1
CD44-230ENST00000528922 WFDC8Q8IUA0 241 aa8.18□□□□□ -1.1
CD44-230ENST00000528922 FAM161BQ96MY7 647 aa8.18□□□□□ -1.1
CD44-230ENST00000528922 PLVAPQ9BX97 442 aa8.18□□□□□ -1.1
CD44-230ENST00000528922 STK17AQ9UEE5 414 aa8.18□□□□□ -1.1
CD44-230ENST00000528922 SOX13Q9UN79 622 aa8.18□□□□□ -1.1
CD44-230ENST00000528922 A0A096LPE4 126 aa8.17□□□□□ -1.1
CD44-230ENST00000528922 A0A1W2PPZ6 126 aa8.17□□□□□ -1.1
CD44-230ENST00000528922 RBM47A0AV96 593 aaKnown RBP8.17□□□□□ -1.1
CD44-230ENST00000528922 GNB5O14775 395 aa8.17□□□□□ -1.1
CD44-230ENST00000528922 EPHA1P21709 976 aa8.17□□□□□ -1.1
CD44-230ENST00000528922 FGD1P98174 961 aa8.17□□□□□ -1.1
CD44-230ENST00000528922 PRPF40BQ6NWY9 871 aaKnown RBP8.17□□□□□ -1.1
CD44-230ENST00000528922 VN1R5Q7Z5H4 357 aa8.17□□□□□ -1.1
CD44-230ENST00000528922 CACTIN-AS1Q8N1I8 211 aa8.17□□□□□ -1.1
CD44-230ENST00000528922 BSNDQ8WZ55 320 aa8.17□□□□□ -1.1
CD44-230ENST00000528922 MUC3BQ9H195 1237 aa8.17□□□□□ -1.1
CD44-230ENST00000528922 TMEM238LA0A1B0GVL6 79 aa8.16□□□□□ -1.1
CD44-230ENST00000528922 FAM181BA6NEQ2 426 aa8.16□□□□□ -1.1
CD44-230ENST00000528922 CDC25BP30305 580 aa8.16□□□□□ -1.1
CD44-230ENST00000528922 DAB2P98082 770 aa8.16□□□□□ -1.1
CD44-230ENST00000528922 ZNF326Q5BKZ1 582 aaKnown RBP8.16□□□□□ -1.1
CD44-230ENST00000528922 TRAPPC3LQ5T215 181 aa8.16□□□□□ -1.1
CD44-230ENST00000528922 TRAK1Q9UPV9 953 aa8.16□□□□□ -1.1
CD44-230ENST00000528922 SPG7Q9UQ90 795 aa8.16□□□□□ -1.1
CD44-230ENST00000528922 GIPC1O14908 333 aa8.15□□□□□ -1.1
CD44-230ENST00000528922 ITPKAP23677 461 aa8.15□□□□□ -1.1
CD44-230ENST00000528922 XPCQ01831 940 aaPredicted RBP8.15□□□□□ -1.1
CD44-230ENST00000528922 TXNDC11Q6PKC3 985 aa8.15□□□□□ -1.1
CD44-230ENST00000528922 PODNQ7Z5L7 613 aa8.15□□□□□ -1.1
CD44-230ENST00000528922 SCARF2Q96GP6 870 aaPredicted RBP8.15□□□□□ -1.1
CD44-230ENST00000528922 FRMD6Q96NE9 622 aa8.15□□□□□ -1.1
CD44-230ENST00000528922 C12orf49Q9H741 205 aa8.15□□□□□ -1.1
CD44-230ENST00000528922 PPME1Q9Y570 386 aa8.15□□□□□ -1.1
CD44-230ENST00000528922 AK5Q9Y6K8 562 aa8.15□□□□□ -1.1
CD44-230ENST00000528922 LINC01387J3KSC0 135 aa8.14□□□□□ -1.11
CD44-230ENST00000528922 FCGRTP55899 365 aa8.14□□□□□ -1.11
CD44-230ENST00000528922 PSMD2Q13200 908 aa8.14□□□□□ -1.11
CD44-230ENST00000528922 TMC4Q7Z404 712 aa8.14□□□□□ -1.11
CD44-230ENST00000528922 C3orf58Q8NDZ4 430 aa8.14□□□□□ -1.11
CD44-230ENST00000528922 A0A0A0MRY4 1105 aa8.13□□□□□ -1.11
CD44-230ENST00000528922 FAM229AH3BQW9 127 aa8.13□□□□□ -1.11
CD44-230ENST00000528922 DEAF1O75398 565 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms