RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 HNRNPUQ00839 825 aaKnown RBP eCLIP13.48□□□□□ -0.25
CD44-227ENST00000528086 DACT2Q5SW24 774 aa13.48□□□□□ -0.25
CD44-227ENST00000528086 KLHDC4Q8TBB5 520 aa13.48□□□□□ -0.25
CD44-227ENST00000528086 CREBZFQ9NS37 354 aa13.48□□□□□ -0.25
CD44-227ENST00000528086 CHMP3Q9Y3E7 222 aa13.48□□□□□ -0.25
CD44-227ENST00000528086 TBC1D10BQ4KMP7 808 aaPredicted RBP13.47□□□□□ -0.25
CD44-227ENST00000528086 LRRC24Q50LG9 513 aa13.47□□□□□ -0.25
CD44-227ENST00000528086 RSBN1LQ6PCB5 846 aaPredicted RBP13.47□□□□□ -0.25
CD44-227ENST00000528086 C15orf52Q6ZUT6 534 aaKnown RBP13.47□□□□□ -0.25
CD44-227ENST00000528086 PODNQ7Z5L7 613 aa13.47□□□□□ -0.25
CD44-227ENST00000528086 MPHOSPH8Q99549 860 aa13.47□□□□□ -0.25
CD44-227ENST00000528086 GLIS2Q9BZE0 524 aaPredicted RBP13.47□□□□□ -0.25
CD44-227ENST00000528086 RPS12P25398 132 aaKnown RBP13.46□□□□□ -0.25
CD44-227ENST00000528086 CERS5Q8N5B7 392 aa13.46□□□□□ -0.25
CD44-227ENST00000528086 VGLL2Q8N8G2 317 aa13.46□□□□□ -0.25
CD44-227ENST00000528086 ANKRD2Q9GZV1 360 aa13.46□□□□□ -0.25
CD44-227ENST00000528086 CNTNAP1P78357 1384 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 USP17L3A6NCW0 530 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 USP17L4A6NCW7 530 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 TMEM88BA6NKF7 163 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 TRIM27P14373 513 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 CCDC57Q2TAC2 916 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 LDHAL6AQ6ZMR3 332 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 USP17L1Q7RTZ2 530 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 MEIS3Q99687 375 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 COA1Q9GZY4 146 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 CD209Q9NNX6 404 aa13.45□□□□□ -0.26
CD44-227ENST00000528086 MKRN1Q9UHC7 482 aaKnown RBP13.45□□□□□ -0.26
CD44-227ENST00000528086 RBM26Q5T8P6 1007 aaKnown RBP13.44□□□□□ -0.26
CD44-227ENST00000528086 INTS3Q68E01 1043 aaKnown RBP13.44□□□□□ -0.26
CD44-227ENST00000528086 AGBL3Q8NEM8 1001 aa13.44□□□□□ -0.26
CD44-227ENST00000528086 ZC3H15Q8WU90 426 aaKnown RBP13.44□□□□□ -0.26
CD44-227ENST00000528086 AOX1Q06278 1338 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 RASSF10A6NK89 507 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 H7C1D1 291 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 PLIN1O60240 522 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 IL1R1P14778 569 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 VEGFBP49765 207 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 PTPN12Q05209 780 aaKnown RBP13.43□□□□□ -0.26
CD44-227ENST00000528086 STRIP1Q5VSL9 837 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 ATG9AQ7Z3C6 839 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 USP48Q86UV5 1035 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 ARHGAP45Q92619 1136 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 ZBED3Q96IU2 234 aaPredicted RBP13.43□□□□□ -0.26
CD44-227ENST00000528086 SCAF8Q9UPN6 1271 aaKnown RBP13.43□□□□□ -0.26
CD44-227ENST00000528086 PCDHAC2Q9Y5I4 1007 aa13.43□□□□□ -0.26
CD44-227ENST00000528086 ZBED9Q6R2W3 1325 aa13.42□□□□□ -0.26
CD44-227ENST00000528086 ADM5C9JUS6 153 aa13.42□□□□□ -0.26
CD44-227ENST00000528086 GTF2IP78347 998 aa13.42□□□□□ -0.26
CD44-227ENST00000528086 KIF4BQ2VIQ3 1234 aa13.42□□□□□ -0.26
CD44-227ENST00000528086 FAM84BQ96KN1 310 aaPredicted RBP13.42□□□□□ -0.26
CD44-227ENST00000528086 API5Q9BZZ5 524 aaKnown RBP13.42□□□□□ -0.26
CD44-227ENST00000528086 CNNM1Q9NRU3 951 aa13.42□□□□□ -0.26
CD44-227ENST00000528086 LRRFIP2Q9Y608 721 aaKnown RBP13.42□□□□□ -0.26
CD44-227ENST00000528086 THSD7BQ9C0I4 1608 aa13.42□□□□□ -0.26
CD44-227ENST00000528086 USP17L8P0C7I0 530 aa13.41□□□□□ -0.26
CD44-227ENST00000528086 RLBP1P12271 317 aa13.41□□□□□ -0.26
CD44-227ENST00000528086 FGFR2P21802 821 aa13.41□□□□□ -0.26
CD44-227ENST00000528086 GYG1P46976 350 aa13.41□□□□□ -0.26
CD44-227ENST00000528086 GRIK5Q16478 980 aa13.41□□□□□ -0.26
CD44-227ENST00000528086 NBPF9Q3BBW0 867 aa13.41□□□□□ -0.26
CD44-227ENST00000528086 TTLL5Q6EMB2 1281 aa13.41□□□□□ -0.26
CD44-227ENST00000528086 JAG2Q9Y219 1238 aa13.41□□□□□ -0.26
CD44-227ENST00000528086 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.41□□□□□ -0.26
CD44-227ENST00000528086 G3V3G9 751 aa13.4□□□□□ -0.26
CD44-227ENST00000528086 UBE4AQ14139 1066 aa13.4□□□□□ -0.26
CD44-227ENST00000528086 SCARF1Q14162 830 aa13.4□□□□□ -0.26
CD44-227ENST00000528086 DCAF8Q5TAQ9 597 aa13.4□□□□□ -0.26
CD44-227ENST00000528086 ATF7IPQ6VMQ6 1270 aa13.4□□□□□ -0.26
CD44-227ENST00000528086 FBXO33Q7Z6M2 555 aa13.4□□□□□ -0.26
CD44-227ENST00000528086 TDRD7Q8NHU6 1098 aaKnown RBP13.4□□□□□ -0.26
CD44-227ENST00000528086 MYOZ2Q9NPC6 264 aa13.4□□□□□ -0.26
CD44-227ENST00000528086 GGA3Q9NZ52 723 aa13.4□□□□□ -0.26
CD44-227ENST00000528086 PA2G4Q9UQ80 394 aaKnown RBP13.4□□□□□ -0.26
CD44-227ENST00000528086 KIF16BQ96L93 1317 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 ARAP2Q8WZ64 1704 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 WNT10BO00744 389 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 CELF2O95319 508 aaKnown RBP13.39□□□□□ -0.27
CD44-227ENST00000528086 KCNJ4P48050 445 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 TAF7LQ5H9L4 462 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 CDC37L1Q7L3B6 337 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 KRT26Q7Z3Y9 468 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 CLUAP1Q96AJ1 413 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 TLL2Q9Y6L7 1015 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 ECM29Q5VYK3 1845 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 FAM205AQ6ZU69 1335 aa13.39□□□□□ -0.27
CD44-227ENST00000528086 COL1A1P02452 1464 aaPredicted RBP13.38□□□□□ -0.27
CD44-227ENST00000528086 EYA2O00167 538 aa13.38□□□□□ -0.27
CD44-227ENST00000528086 PDE8BO95263 885 aa13.38□□□□□ -0.27
CD44-227ENST00000528086 UBTFL1P0CB47 393 aaPredicted RBP13.38□□□□□ -0.27
CD44-227ENST00000528086 ANGEL2Q5VTE6 544 aaKnown RBP13.38□□□□□ -0.27
CD44-227ENST00000528086 SAPCD2Q86UD0 394 aa13.38□□□□□ -0.27
CD44-227ENST00000528086 KIAA0825Q8IV33 1275 aa13.38□□□□□ -0.27
CD44-227ENST00000528086 TMEM57Q8N5G2 664 aa13.38□□□□□ -0.27
CD44-227ENST00000528086 MROH5Q6ZUA9 1318 aa13.38□□□□□ -0.27
CD44-227ENST00000528086 SASH1O94885 1247 aa13.37□□□□□ -0.27
CD44-227ENST00000528086 HSPA1AP0DMV8 641 aaKnown RBP13.37□□□□□ -0.27
CD44-227ENST00000528086 HSPA1BP0DMV9 641 aaKnown RBP13.37□□□□□ -0.27
CD44-227ENST00000528086 DEFB115Q30KQ5 88 aa13.37□□□□□ -0.27
CD44-227ENST00000528086 PRAMEF18Q5VWM3 479 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms