RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 MMP14P50281 582 aa13.58□□□□□ -0.24
CPSF1-203ENST00000527916 INHBEP58166 350 aa13.58□□□□□ -0.24
CPSF1-203ENST00000527916 NBPF9Q3BBW0 867 aa13.58□□□□□ -0.24
CPSF1-203ENST00000527916 CCDC152Q4G0S7 254 aa13.58□□□□□ -0.24
CPSF1-203ENST00000527916 DUSP27Q5VZP5 1158 aa13.58□□□□□ -0.24
CPSF1-203ENST00000527916 CHMP4AQ9BY43 222 aa13.58□□□□□ -0.24
CPSF1-203ENST00000527916 HYPKQ9NX55 129 aa13.58□□□□□ -0.24
CPSF1-203ENST00000527916 SCAF8Q9UPN6 1271 aaKnown RBP13.58□□□□□ -0.24
CPSF1-203ENST00000527916 XDHP47989 1333 aa13.58□□□□□ -0.24
CPSF1-203ENST00000527916 PSME4Q14997 1843 aa13.57□□□□□ -0.24
CPSF1-203ENST00000527916 ATP2B4P23634 1241 aa13.57□□□□□ -0.24
CPSF1-203ENST00000527916 CCDC27Q2M243 656 aa13.57□□□□□ -0.24
CPSF1-203ENST00000527916 CCDC184Q52MB2 194 aa13.57□□□□□ -0.24
CPSF1-203ENST00000527916 ZBTB38Q8NAP3 1195 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-203ENST00000527916 SEC31BQ9NQW1 1179 aa13.57□□□□□ -0.24
CPSF1-203ENST00000527916 POTEFA5A3E0 1075 aa13.56□□□□□ -0.24
CPSF1-203ENST00000527916 MANSC4A6NHS7 340 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-203ENST00000527916 PTPN12Q05209 780 aaKnown RBP13.56□□□□□ -0.24
CPSF1-203ENST00000527916 SPRYD7Q5W111 196 aa13.56□□□□□ -0.24
CPSF1-203ENST00000527916 OTOP1Q7RTM1 612 aa13.56□□□□□ -0.24
CPSF1-203ENST00000527916 APOBEC3FQ8IUX4 373 aaKnown RBP13.56□□□□□ -0.24
CPSF1-203ENST00000527916 R3HDMLQ9H3Y0 253 aa13.56□□□□□ -0.24
CPSF1-203ENST00000527916 MYO3BQ8WXR4 1341 aa13.56□□□□□ -0.24
CPSF1-203ENST00000527916 WNT10BO00744 389 aa13.55□□□□□ -0.24
CPSF1-203ENST00000527916 ANP32CO43423 234 aa13.55□□□□□ -0.24
CPSF1-203ENST00000527916 FXR1P51114 621 aaKnown RBP eCLIP13.55□□□□□ -0.24
CPSF1-203ENST00000527916 ANKRD18AQ8IVF6 992 aa13.55□□□□□ -0.24
CPSF1-203ENST00000527916 ERO1AQ96HE7 468 aa13.55□□□□□ -0.24
CPSF1-203ENST00000527916 TRIOBPQ9H2D6 2365 aa13.55□□□□□ -0.24
CPSF1-203ENST00000527916 COL4A1P02462 1669 aa13.55□□□□□ -0.24
CPSF1-203ENST00000527916 GOLGA2Q08379 1002 aa13.54□□□□□ -0.24
CPSF1-203ENST00000527916 PRKG1Q13976 671 aa13.54□□□□□ -0.24
CPSF1-203ENST00000527916 LDLRAD1Q5T700 205 aa13.54□□□□□ -0.24
CPSF1-203ENST00000527916 OTUD7BQ6GQQ9 843 aa13.54□□□□□ -0.24
CPSF1-203ENST00000527916 RIC3Q7Z5B4 369 aa13.54□□□□□ -0.24
CPSF1-203ENST00000527916 IFNL1Q8IU54 200 aa13.54□□□□□ -0.24
CPSF1-203ENST00000527916 FBXW7Q969H0 707 aa13.54□□□□□ -0.24
CPSF1-203ENST00000527916 SLC10A4Q96EP9 437 aa13.54□□□□□ -0.24
CPSF1-203ENST00000527916 ANGEL1Q9UNK9 670 aaKnown RBP13.54□□□□□ -0.24
CPSF1-203ENST00000527916 PDE8AO60658 829 aa13.53□□□□□ -0.24
CPSF1-203ENST00000527916 DACT2Q5SW24 774 aa13.53□□□□□ -0.24
CPSF1-203ENST00000527916 STRIP1Q5VSL9 837 aa13.53□□□□□ -0.24
CPSF1-203ENST00000527916 CDC5LQ99459 802 aaKnown RBP13.53□□□□□ -0.24
CPSF1-203ENST00000527916 TMEM106CQ9BVX2 250 aa13.53□□□□□ -0.24
CPSF1-203ENST00000527916 PTPN22Q9Y2R2 807 aa13.53□□□□□ -0.24
CPSF1-203ENST00000527916 A0A0C4DFX4 3053 aa13.53□□□□□ -0.24
CPSF1-203ENST00000527916 SASH1O94885 1247 aa13.52□□□□□ -0.25
CPSF1-203ENST00000527916 ZBTB48P10074 688 aaPredicted RBP13.52□□□□□ -0.25
CPSF1-203ENST00000527916 WWC1Q8IX03 1113 aa13.52□□□□□ -0.25
CPSF1-203ENST00000527916 C8orf58Q8NAV2 365 aa13.52□□□□□ -0.25
CPSF1-203ENST00000527916 CCDC191Q8NCU4 936 aa13.52□□□□□ -0.25
CPSF1-203ENST00000527916 ARMC5Q96C12 935 aa13.52□□□□□ -0.25
CPSF1-203ENST00000527916 EFCC1Q9HA90 598 aa13.52□□□□□ -0.25
CPSF1-203ENST00000527916 MRS2Q9HD23 443 aa13.52□□□□□ -0.25
CPSF1-203ENST00000527916 IL16Q14005 1332 aa13.52□□□□□ -0.25
CPSF1-203ENST00000527916 MED23Q9ULK4 1368 aa13.52□□□□□ -0.25
CPSF1-203ENST00000527916 RBBP6Q7Z6E9 1792 aaKnown RBP13.51□□□□□ -0.25
CPSF1-203ENST00000527916 PPP1R12BO60237 982 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-203ENST00000527916 PCCAP05165 728 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-203ENST00000527916 EN2P19622 333 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-203ENST00000527916 CCDC30Q5VVM6 783 aa13.51□□□□□ -0.25
CPSF1-203ENST00000527916 CCDC85AQ96PX6 553 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-203ENST00000527916 COA1Q9GZY4 146 aa13.51□□□□□ -0.25
CPSF1-203ENST00000527916 SZT2Q5T011 3432 aa13.51□□□□□ -0.25
CPSF1-203ENST00000527916 UNCXA6NJT0 531 aa13.5□□□□□ -0.25
CPSF1-203ENST00000527916 ELL2O00472 640 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-203ENST00000527916 ARHGEF6Q15052 776 aa13.5□□□□□ -0.25
CPSF1-203ENST00000527916 NBPF11Q86T75 865 aa13.5□□□□□ -0.25
CPSF1-203ENST00000527916 MXD3Q9BW11 206 aa13.5□□□□□ -0.25
CPSF1-203ENST00000527916 CWC25Q9NXE8 425 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-203ENST00000527916 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-203ENST00000527916 COLQQ9Y215 455 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-203ENST00000527916 CACNA1FO60840 1977 aa13.5□□□□□ -0.25
CPSF1-203ENST00000527916 COL1A1P02452 1464 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-203ENST00000527916 SP3Q02447 781 aa13.49□□□□□ -0.25
CPSF1-203ENST00000527916 MAP3K11Q16584 847 aa13.49□□□□□ -0.25
CPSF1-203ENST00000527916 TTLL5Q6EMB2 1281 aa13.49□□□□□ -0.25
CPSF1-203ENST00000527916 CD99L2Q8TCZ2 262 aa13.49□□□□□ -0.25
CPSF1-203ENST00000527916 WNK4Q96J92 1243 aa13.49□□□□□ -0.25
CPSF1-203ENST00000527916 MYD88Q99836 296 aa13.49□□□□□ -0.25
CPSF1-203ENST00000527916 DEFB129Q9H1M3 183 aa13.49□□□□□ -0.25
CPSF1-203ENST00000527916 PHAXQ9H814 394 aaKnown RBP13.49□□□□□ -0.25
CPSF1-203ENST00000527916 BSDC1Q9NW68 430 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-203ENST00000527916 IGF2BP3O00425 579 aaKnown RBP eCLIP13.48□□□□□ -0.25
CPSF1-203ENST00000527916 CCT4P50991 539 aaKnown RBP13.48□□□□□ -0.25
CPSF1-203ENST00000527916 CRHR2Q13324 411 aa13.48□□□□□ -0.25
CPSF1-203ENST00000527916 SUPT20HL1Q3ZLR7 823 aa13.48□□□□□ -0.25
CPSF1-203ENST00000527916 KIAA0825Q8IV33 1275 aa13.48□□□□□ -0.25
CPSF1-203ENST00000527916 TSPYL6Q8N831 410 aa13.48□□□□□ -0.25
CPSF1-203ENST00000527916 MINPP1Q9UNW1 487 aa13.48□□□□□ -0.25
CPSF1-203ENST00000527916 PPP2R3BQ9Y5P8 575 aa13.48□□□□□ -0.25
CPSF1-203ENST00000527916 RANBP2P49792 3224 aaKnown RBP13.47□□□□□ -0.25
CPSF1-203ENST00000527916 DDX58O95786 925 aaKnown RBP13.47□□□□□ -0.25
CPSF1-203ENST00000527916 CTSWP56202 376 aa13.47□□□□□ -0.25
CPSF1-203ENST00000527916 DLGAP5Q15398 846 aa13.47□□□□□ -0.25
CPSF1-203ENST00000527916 SLC9C1Q4G0N8 1177 aa13.47□□□□□ -0.25
CPSF1-203ENST00000527916 WDR63Q8IWG1 891 aa13.47□□□□□ -0.25
CPSF1-203ENST00000527916 LEMD3Q9Y2U8 911 aa13.47□□□□□ -0.25
CPSF1-203ENST00000527916 WTIPA6NIX2 430 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-203ENST00000527916 MYO1BO43795 1136 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms