RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-223ENST00000524033 KDM4CQ9H3R0 1056 aa9.5□□□□□ -0.89
SPIDR-223ENST00000524033 USP16Q9Y5T5 823 aa9.5□□□□□ -0.89
SPIDR-223ENST00000524033 MRC1P22897 1456 aa9.5□□□□□ -0.89
SPIDR-223ENST00000524033 KCPQ6ZWJ8 1503 aa9.5□□□□□ -0.89
SPIDR-223ENST00000524033 OFD1O75665 1012 aa9.49□□□□□ -0.89
SPIDR-223ENST00000524033 SNRPA1P09661 255 aaKnown RBP9.49□□□□□ -0.89
SPIDR-223ENST00000524033 CUL4AQ13619 759 aa9.49□□□□□ -0.89
SPIDR-223ENST00000524033 DCTN1Q14203 1278 aa9.49□□□□□ -0.89
SPIDR-223ENST00000524033 TAF7Q15545 349 aaPredicted RBP9.49□□□□□ -0.89
SPIDR-223ENST00000524033 ZSCAN23Q3MJ62 389 aa9.49□□□□□ -0.89
SPIDR-223ENST00000524033 TBC1D9BQ66K14 1250 aa9.49□□□□□ -0.89
SPIDR-223ENST00000524033 C16orf71Q8IYS4 520 aaPredicted RBP9.49□□□□□ -0.89
SPIDR-223ENST00000524033 KCNK17Q96T54 332 aa9.49□□□□□ -0.89
SPIDR-223ENST00000524033 BRIP1Q9BX63 1249 aa9.49□□□□□ -0.89
SPIDR-223ENST00000524033 DDX49Q9Y6V7 483 aaKnown RBP9.49□□□□□ -0.89
SPIDR-223ENST00000524033 ELL2O00472 640 aaPredicted RBP9.48□□□□□ -0.89
SPIDR-223ENST00000524033 NPHP1O15259 732 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 TOMM70O94826 608 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 OATP04181 439 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 HSP90AA1P07900 732 aaKnown RBP9.48□□□□□ -0.89
SPIDR-223ENST00000524033 HSPA6P17066 643 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 PDE6BP35913 854 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 EMP3P54852 163 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 PRSS12P56730 875 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 ZNF622Q969S3 477 aaKnown RBP eCLIP9.48□□□□□ -0.892e-7■□□□□ 8.8
SPIDR-223ENST00000524033 TRIM44Q96DX7 344 aaPredicted RBP9.48□□□□□ -0.89
SPIDR-223ENST00000524033 MEIS3Q99687 375 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 MIS18AQ9NYP9 233 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 RNF181Q9P0P0 153 aa9.48□□□□□ -0.89
SPIDR-223ENST00000524033 KDM3BQ7LBC6 1761 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 PRAMEF22A3QJZ6 481 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 ZNF500O60304 480 aaPredicted RBP9.47□□□□□ -0.89
SPIDR-223ENST00000524033 CAMTA2O94983 1202 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 REC8O95072 547 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 PIP4K2AP48426 406 aaPredicted RBP9.47□□□□□ -0.89
SPIDR-223ENST00000524033 PKP1Q13835 747 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 MCTP1Q6DN14 999 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 DZIP3Q86Y13 1208 aaKnown RBP9.47□□□□□ -0.89
SPIDR-223ENST00000524033 CCDC24Q8N4L8 307 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 GPT2Q8TD30 523 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 FAM163AQ96GL9 167 aaPredicted RBP9.47□□□□□ -0.89
SPIDR-223ENST00000524033 RBSNQ9H1K0 784 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 NMRK2Q9NPI5 230 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 C4AP0C0L4 1744 aa9.47□□□□□ -0.89
SPIDR-223ENST00000524033 TCHHQ07283 1943 aa9.46□□□□□ -0.89
SPIDR-223ENST00000524033 COL5A3P25940 1745 aaPredicted RBP9.46□□□□□ -0.89
SPIDR-223ENST00000524033 PPP1R3GB7ZBB8 358 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 ERC2O15083 957 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 EPB41L2O43491 1005 aaKnown RBP9.46□□□□□ -0.9
SPIDR-223ENST00000524033 ST18O60284 1047 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 LMNB1P20700 586 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 AMHR2Q16671 573 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 KRT24Q2M2I5 525 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 VARS2Q5ST30 1063 aaKnown RBP9.46□□□□□ -0.9
SPIDR-223ENST00000524033 PRR5LQ6MZQ0 368 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 CLEC4GQ6UXB4 293 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.46□□□□□ -0.9
SPIDR-223ENST00000524033 ZGPATQ8N5A5 531 aaKnown RBP9.46□□□□□ -0.9
SPIDR-223ENST00000524033 PCNTO95613 3336 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 AOX1Q06278 1338 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 CHD4Q14839 1912 aa9.46□□□□□ -0.9
SPIDR-223ENST00000524033 SMARCA5O60264 1052 aaPredicted RBP9.45□□□□□ -0.9
SPIDR-223ENST00000524033 BRD1O95696 1058 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 COL9A1P20849 921 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 PDE1AP54750 535 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 ANAPC15P60006 121 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 ST5P78524 1137 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 CAVIN1Q6NZI2 390 aaKnown RBP9.45□□□□□ -0.9
SPIDR-223ENST00000524033 CASC1Q6TDU7 716 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 LRSAM1Q6UWE0 723 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 NBPF5PQ86XG9 351 aaPredicted RBP9.45□□□□□ -0.9
SPIDR-223ENST00000524033 CNBD1Q8NA66 436 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 RBM46Q8TBY0 533 aaKnown RBP9.45□□□□□ -0.9
SPIDR-223ENST00000524033 RRAGCQ9HB90 399 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 TMEM63CQ9P1W3 806 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 RBM27Q9P2N5 1060 aaKnown RBP9.45□□□□□ -0.9
SPIDR-223ENST00000524033 STAP2Q9UGK3 403 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 NOL7Q9UMY1 257 aaKnown RBP9.45□□□□□ -0.9
SPIDR-223ENST00000524033 ZNF652Q9Y2D9 606 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 CARMIL3Q8ND23 1372 aa9.45□□□□□ -0.9
SPIDR-223ENST00000524033 NBPF26B4DH59 902 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 C21orf2O43822 256 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 HMMRO75330 724 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 MCM2P49736 904 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 CCT4P50991 539 aaKnown RBP9.44□□□□□ -0.9
SPIDR-223ENST00000524033 APLP1P51693 650 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 MDM2Q00987 491 aaPredicted RBP9.44□□□□□ -0.9
SPIDR-223ENST00000524033 RASSF7Q02833 373 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 NBPF10Q6P3W6 841 aaKnown RBP9.44□□□□□ -0.9
SPIDR-223ENST00000524033 TPTE2Q6XPS3 522 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 PACS2Q86VP3 889 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 NBPF15Q8N660 670 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 MARVELD3Q96A59 401 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 INTS4Q96HW7 963 aaKnown RBP9.44□□□□□ -0.9
SPIDR-223ENST00000524033 ESYT1Q9BSJ8 1104 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 TJP1Q07157 1748 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 SCN11AQ9UI33 1791 aa9.44□□□□□ -0.9
SPIDR-223ENST00000524033 MYH14Q7Z406 1995 aaKnown RBP9.44□□□□□ -0.9
SPIDR-223ENST00000524033 ADAMTS7Q9UKP4 1686 aa9.43□□□□□ -0.9
SPIDR-223ENST00000524033 MBD3O95983 291 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms