RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 DEPDC5O75140 1603 aa15.88■□□□□ 0.13
SYNPO-205ENST00000522122 GNG11P61952 73 aa15.88■□□□□ 0.13
SYNPO-205ENST00000522122 TMEM132AQ24JP5 1023 aa15.88■□□□□ 0.13
SYNPO-205ENST00000522122 UQCRFS1P1P0C7P4 283 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 CPA1P15085 419 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 TSG101Q99816 390 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 MYO3AQ8NEV4 1616 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 ZBTB43O43298 467 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 BMS1Q14692 1282 aaKnown RBP15.87■□□□□ 0.13
SYNPO-205ENST00000522122 ALG1Q9BT22 464 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 NEFHP12036 1026 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 RPS6KB1P23443 525 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 PAFAH1B1P43034 410 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 PPP1R12BO60237 982 aaPredicted RBP15.87■□□□□ 0.13
SYNPO-205ENST00000522122 SSH3Q8TE77 659 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 PYM1Q9BRP8 204 aaKnown RBP15.87■□□□□ 0.13
SYNPO-205ENST00000522122 TMX1Q9H3N1 280 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 CLSTN2Q9H4D0 955 aa15.87■□□□□ 0.13
SYNPO-205ENST00000522122 ZHX1Q9UKY1 873 aaPredicted RBP15.87■□□□□ 0.13
SYNPO-205ENST00000522122 LUZP1Q86V48 1076 aa15.86■□□□□ 0.13
SYNPO-205ENST00000522122 TM6SF1Q9BZW5 370 aa15.86■□□□□ 0.13
SYNPO-205ENST00000522122 UBA7P41226 1012 aa15.86■□□□□ 0.13
SYNPO-205ENST00000522122 SLC27A2O14975 620 aa15.86■□□□□ 0.13
SYNPO-205ENST00000522122 KIF5BP33176 963 aa15.86■□□□□ 0.13
SYNPO-205ENST00000522122 CHRNA2Q15822 529 aa15.86■□□□□ 0.13
SYNPO-205ENST00000522122 POTEB2H3BUK9 544 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 USP8P40818 1118 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 TMEM266Q2M3C6 531 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 CWF19L2Q2TBE0 894 aaKnown RBP15.85■□□□□ 0.13
SYNPO-205ENST00000522122 TAX1BP1Q86VP1 789 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 TCP11L1Q9NUJ3 509 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 YEATS2Q9ULM3 1422 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 PLEKHG3A1L390 1219 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 ZPR1O75312 459 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 ATP2B3Q16720 1220 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 KLHL34Q8N239 644 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 MTIF2P46199 727 aaKnown RBP15.85■□□□□ 0.13
SYNPO-205ENST00000522122 CDC5LQ99459 802 aaKnown RBP15.85■□□□□ 0.13
SYNPO-205ENST00000522122 GOLGA6L7A0A1B0GV03 622 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 DDIT3P35638 169 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 AOPEPQ8N6M6 819 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 CALCOCO1Q9P1Z2 691 aa15.85■□□□□ 0.13
SYNPO-205ENST00000522122 WTAPQ15007 396 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 FEZ1Q99689 392 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.84■□□□□ 0.13
SYNPO-205ENST00000522122 ANKIB1Q9P2G1 1089 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 EXOC5O00471 708 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 N4BP3O15049 544 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 TMTC2Q8N394 836 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 CCDC12Q8WUD4 166 aaPredicted RBP15.84■□□□□ 0.13
SYNPO-205ENST00000522122 VPS36Q86VN1 386 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 KRT222Q8N1A0 295 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 MROH2AA6NES4 1674 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 TUBB4AP04350 444 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 TDRD12Q587J7 1177 aaKnown RBP15.84■□□□□ 0.13
SYNPO-205ENST00000522122 PAG1Q9NWQ8 432 aa15.84■□□□□ 0.13
SYNPO-205ENST00000522122 VWDEQ8N2E2 1590 aa15.83■□□□□ 0.13
SYNPO-205ENST00000522122 ALKQ9UM73 1620 aa15.83■□□□□ 0.13
SYNPO-205ENST00000522122 TSPY2A6NKD2 308 aa15.83■□□□□ 0.13
SYNPO-205ENST00000522122 MPHOSPH10O00566 681 aaKnown RBP15.83■□□□□ 0.13
SYNPO-205ENST00000522122 KIF20AO95235 890 aa15.83■□□□□ 0.13
SYNPO-205ENST00000522122 SPTLC2O15270 562 aa15.83■□□□□ 0.12
SYNPO-205ENST00000522122 ATL3Q6DD88 541 aa15.83■□□□□ 0.12
SYNPO-205ENST00000522122 KRT23Q9C075 422 aa15.83■□□□□ 0.12
SYNPO-205ENST00000522122 AMPD3Q01432 767 aa15.83■□□□□ 0.12
SYNPO-205ENST00000522122 OGFRQ9NZT2 677 aa15.83■□□□□ 0.12
SYNPO-205ENST00000522122 ZNF75DP51815 510 aa15.83■□□□□ 0.12
SYNPO-205ENST00000522122 PDE4BQ07343 736 aa15.83■□□□□ 0.12
SYNPO-205ENST00000522122 SEPT7Q16181 437 aaKnown RBP15.83■□□□□ 0.12
SYNPO-205ENST00000522122 C17orf53Q8N3J3 647 aaPredicted RBP15.83■□□□□ 0.12
SYNPO-205ENST00000522122 ADGRB2O60241 1585 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 RIOK3O14730 519 aaKnown RBP15.82■□□□□ 0.12
SYNPO-205ENST00000522122 BMP15O95972 392 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 MARCKSP29966 332 aaPredicted RBP15.82■□□□□ 0.12
SYNPO-205ENST00000522122 DHX32Q7L7V1 743 aaKnown RBP15.82■□□□□ 0.12
SYNPO-205ENST00000522122 CHAMP1Q96JM3 812 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 DNAI1Q9UI46 699 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 SHTN1A0MZ66 631 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 IDEP14735 1019 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 NEXMIFQ5QGS0 1516 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 PRC1O43663 620 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 LRRC59Q96AG4 307 aaKnown RBP15.82■□□□□ 0.12
SYNPO-205ENST00000522122 LSG1Q9H089 658 aaKnown RBP15.82■□□□□ 0.12
SYNPO-205ENST00000522122 USP44Q9H0E7 712 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 ZSWIM4Q9H7M6 989 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 CNNM2Q9H8M5 875 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 CBX8Q9HC52 389 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 SLC9C2Q5TAH2 1124 aa15.82■□□□□ 0.12
SYNPO-205ENST00000522122 BICC1Q9H694 974 aaKnown RBP15.82■□□□□ 0.12
SYNPO-205ENST00000522122 ADGRB1O14514 1584 aa15.81■□□□□ 0.12
SYNPO-205ENST00000522122 CRACR2BQ8N4Y2 399 aaPredicted RBP15.81■□□□□ 0.12
SYNPO-205ENST00000522122 CALML4Q96GE6 196 aa15.81■□□□□ 0.12
SYNPO-205ENST00000522122 NBPF7P0C2Y1 421 aaPredicted RBP15.81■□□□□ 0.12
SYNPO-205ENST00000522122 ENOX2Q16206 610 aaKnown RBP15.81■□□□□ 0.12
SYNPO-205ENST00000522122 LMOD1P29536 600 aaPredicted RBP15.81■□□□□ 0.12
SYNPO-205ENST00000522122 RTN1Q16799 776 aa15.81■□□□□ 0.12
SYNPO-205ENST00000522122 LDHCP07864 332 aa15.8■□□□□ 0.12
SYNPO-205ENST00000522122 GTF2F1P35269 517 aaKnown RBP eCLIP15.8■□□□□ 0.12
SYNPO-205ENST00000522122 CDC37L1Q7L3B6 337 aa15.8■□□□□ 0.12
SYNPO-205ENST00000522122 CADPS2Q86UW7 1296 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms