RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 FAM117BQ6P1L5 589 aa6.59□□□□□ -1.35
CSMD3-209ENST00000519485 FOXD4L4Q8WXT5 416 aaPredicted RBP6.59□□□□□ -1.35
CSMD3-209ENST00000519485 SAP130Q9H0E3 1048 aa6.59□□□□□ -1.35
CSMD3-209ENST00000519485 FAM26DQ5JW98 314 aa6.58□□□□□ -1.36
CSMD3-209ENST00000519485 CEP120Q8N960 986 aa6.58□□□□□ -1.36
CSMD3-209ENST00000519485 PBX4Q9BYU1 374 aa6.58□□□□□ -1.36
CSMD3-209ENST00000519485 NOVA2Q9UNW9 492 aaKnown RBP6.58□□□□□ -1.36
CSMD3-209ENST00000519485 ADAM11O75078 769 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 PTPRAP18433 802 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 EPHA1P21709 976 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 FAM69CQ0P6D2 419 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 TTC39BQ5VTQ0 682 aaPredicted RBP6.57□□□□□ -1.36
CSMD3-209ENST00000519485 TXNDC11Q6PKC3 985 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 ADAMTSL4Q6UY14 1074 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 LACRTQ9GZZ8 138 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 RASSF4Q9H2L5 321 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 OSGEPQ9NPF4 335 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 SEC31BQ9NQW1 1179 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 ABI2Q9NYB9 513 aaPredicted RBP6.57□□□□□ -1.36
CSMD3-209ENST00000519485 ADGRE2Q9UHX3 823 aa6.57□□□□□ -1.36
CSMD3-209ENST00000519485 SCNN1AP37088 669 aa6.56□□□□□ -1.36
CSMD3-209ENST00000519485 PIP4K2BP78356 416 aa6.56□□□□□ -1.36
CSMD3-209ENST00000519485 TMEM132AQ24JP5 1023 aa6.56□□□□□ -1.36
CSMD3-209ENST00000519485 CARD10Q9BWT7 1032 aa6.56□□□□□ -1.36
CSMD3-209ENST00000519485 RNF208Q9H0X6 261 aa6.56□□□□□ -1.36
CSMD3-209ENST00000519485 MEGF11A6BM72 1044 aa6.55□□□□□ -1.36
CSMD3-209ENST00000519485 H3BRJ5 948 aa6.55□□□□□ -1.36
CSMD3-209ENST00000519485 ZAP70P43403 619 aa6.55□□□□□ -1.36
CSMD3-209ENST00000519485 CPSF6Q16630 551 aaKnown RBP eCLIP6.55□□□□□ -1.36
CSMD3-209ENST00000519485 LCE1DQ5T752 114 aa6.55□□□□□ -1.36
CSMD3-209ENST00000519485 PDE12Q6L8Q7 609 aaKnown RBP6.55□□□□□ -1.36
CSMD3-209ENST00000519485 BEND4Q6ZU67 534 aa6.55□□□□□ -1.36
CSMD3-209ENST00000519485 SHKBP1Q8TBC3 707 aa6.55□□□□□ -1.36
CSMD3-209ENST00000519485 PRIMPOLQ96LW4 560 aa6.55□□□□□ -1.36
CSMD3-209ENST00000519485 POP1Q99575 1024 aaKnown RBP6.55□□□□□ -1.36
CSMD3-209ENST00000519485 ARID1BQ8NFD5 2236 aaPredicted RBP6.54□□□□□ -1.36
CSMD3-209ENST00000519485 BMP3P12645 472 aa6.54□□□□□ -1.36
CSMD3-209ENST00000519485 RFX1P22670 979 aa6.54□□□□□ -1.36
CSMD3-209ENST00000519485 UBASH3BQ8TF42 649 aa6.54□□□□□ -1.36
CSMD3-209ENST00000519485 KLHDC7BQ96G42 594 aa6.54□□□□□ -1.36
CSMD3-209ENST00000519485 SH2B1Q9NRF2 756 aaPredicted RBP6.54□□□□□ -1.36
CSMD3-209ENST00000519485 CXXC1Q9P0U4 656 aaPredicted RBP6.54□□□□□ -1.36
CSMD3-209ENST00000519485 FAM177BA6PVY3 158 aa6.53□□□□□ -1.36
CSMD3-209ENST00000519485 DDX3YO15523 660 aaKnown RBP6.53□□□□□ -1.36
CSMD3-209ENST00000519485 SART1O43290 800 aaKnown RBP6.53□□□□□ -1.36
CSMD3-209ENST00000519485 PRMT3O60678 531 aa6.53□□□□□ -1.36
CSMD3-209ENST00000519485 PREPP48147 710 aa6.53□□□□□ -1.36
CSMD3-209ENST00000519485 FZD5Q13467 585 aa6.53□□□□□ -1.36
CSMD3-209ENST00000519485 ABTB2Q8N961 1025 aa6.53□□□□□ -1.36
CSMD3-209ENST00000519485 KRTAP4-7Q9BYR0 210 aa6.53□□□□□ -1.36
CSMD3-209ENST00000519485 STIM2Q9P246 746 aa6.53□□□□□ -1.36
CSMD3-209ENST00000519485 ZMIZ1Q9ULJ6 1067 aa6.53□□□□□ -1.36
CSMD3-209ENST00000519485 CABP4P57796 275 aa6.52□□□□□ -1.37
CSMD3-209ENST00000519485 XKR5Q6UX68 686 aa6.52□□□□□ -1.37
CSMD3-209ENST00000519485 NCAPG2Q86XI2 1143 aa6.52□□□□□ -1.37
CSMD3-209ENST00000519485 PIM2Q9P1W9 311 aa6.52□□□□□ -1.37
CSMD3-209ENST00000519485 SALL4Q9UJQ4 1053 aa6.52□□□□□ -1.37
CSMD3-209ENST00000519485 NFKBIEO00221 500 aa6.51□□□□□ -1.37
CSMD3-209ENST00000519485 PRNPP04156 253 aa6.51□□□□□ -1.37
CSMD3-209ENST00000519485 CYP2E1P05181 493 aaPredicted RBP6.51□□□□□ -1.37
CSMD3-209ENST00000519485 RPLP1P05386 114 aaKnown RBP6.51□□□□□ -1.37
CSMD3-209ENST00000519485 GIMAP7Q8NHV1 300 aa6.51□□□□□ -1.37
CSMD3-209ENST00000519485 GPR152Q8TDT2 470 aa6.51□□□□□ -1.37
CSMD3-209ENST00000519485 ZMYND15Q9H091 742 aa6.51□□□□□ -1.37
CSMD3-209ENST00000519485 KCNF1Q9H3M0 494 aa6.51□□□□□ -1.37
CSMD3-209ENST00000519485 ELP3Q9H9T3 547 aa6.51□□□□□ -1.37
CSMD3-209ENST00000519485 CDC25BP30305 580 aa6.5□□□□□ -1.37
CSMD3-209ENST00000519485 MSMPQ1L6U9 139 aa6.5□□□□□ -1.37
CSMD3-209ENST00000519485 FDX2Q6P4F2 183 aa6.5□□□□□ -1.37
CSMD3-209ENST00000519485 RUSC1Q9BVN2 902 aa6.5□□□□□ -1.37
CSMD3-209ENST00000519485 SUGCTQ9HAC7 445 aa6.5□□□□□ -1.37
CSMD3-209ENST00000519485 SOX13Q9UN79 622 aa6.5□□□□□ -1.37
CSMD3-209ENST00000519485 WDR64B1ANS9 1081 aa6.49□□□□□ -1.37
CSMD3-209ENST00000519485 ZBTB39O15060 712 aa6.49□□□□□ -1.37
CSMD3-209ENST00000519485 HOXA10P31260 410 aaPredicted RBP6.49□□□□□ -1.37
CSMD3-209ENST00000519485 CAPN12Q6ZSI9 719 aa6.49□□□□□ -1.37
CSMD3-209ENST00000519485 CBLL1Q75N03 491 aa6.49□□□□□ -1.37
CSMD3-209ENST00000519485 TMPRSS13Q9BYE2 586 aa6.49□□□□□ -1.37
CSMD3-209ENST00000519485 TMEM63CQ9P1W3 806 aa6.49□□□□□ -1.37
CSMD3-209ENST00000519485 TIAF1O95411 115 aa6.48□□□□□ -1.37
CSMD3-209ENST00000519485 FOSL1P15407 271 aa6.48□□□□□ -1.37
CSMD3-209ENST00000519485 MAP4P27816 1152 aaKnown RBP6.48□□□□□ -1.37
CSMD3-209ENST00000519485 SRPK2P78362 688 aaKnown RBP6.48□□□□□ -1.37
CSMD3-209ENST00000519485 CDCA8Q53HL2 280 aa6.48□□□□□ -1.37
CSMD3-209ENST00000519485 ABI1Q8IZP0 508 aa6.48□□□□□ -1.37
CSMD3-209ENST00000519485 SMG8Q8ND04 991 aaKnown RBP6.48□□□□□ -1.37
CSMD3-209ENST00000519485 CLP1Q92989 425 aaKnown RBP6.48□□□□□ -1.37
CSMD3-209ENST00000519485 MFSD14AQ96MC6 490 aa6.48□□□□□ -1.37
CSMD3-209ENST00000519485 DZANK1Q9NVP4 752 aa6.48□□□□□ -1.37
CSMD3-209ENST00000519485 PDE2AO00408 941 aaPredicted RBP6.47□□□□□ -1.37
CSMD3-209ENST00000519485 ARL4DP49703 201 aa6.47□□□□□ -1.37
CSMD3-209ENST00000519485 NLRP12P59046 1061 aa6.47□□□□□ -1.37
CSMD3-209ENST00000519485 C19orf57Q0VDD7 668 aa6.47□□□□□ -1.37
CSMD3-209ENST00000519485 TMEM102Q8N9M5 508 aaPredicted RBP6.47□□□□□ -1.37
CSMD3-209ENST00000519485 STK32AQ8WU08 396 aa6.47□□□□□ -1.37
CSMD3-209ENST00000519485 FBXL18Q96ME1 805 aa6.47□□□□□ -1.37
CSMD3-209ENST00000519485 SOX17Q9H6I2 414 aaPredicted RBP6.47□□□□□ -1.37
CSMD3-209ENST00000519485 ATG3Q9NT62 314 aa6.47□□□□□ -1.37
CSMD3-209ENST00000519485 CNTN3Q9P232 1028 aa6.47□□□□□ -1.37
CSMD3-209ENST00000519485 CCDC39Q9UFE4 941 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms