RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 UFL1O94874 794 aa12.11□□□□□ -0.47
NUP54-211ENST00000512151 GJA5P36382 358 aa12.11□□□□□ -0.47
NUP54-211ENST00000512151 ARMC9Q7Z3E5 817 aa12.11□□□□□ -0.47
NUP54-211ENST00000512151 SHISA4Q96DD7 197 aa12.11□□□□□ -0.47
NUP54-211ENST00000512151 WNK4Q96J92 1243 aa12.11□□□□□ -0.47
NUP54-211ENST00000512151 ANGEL1Q9UNK9 670 aaKnown RBP12.11□□□□□ -0.47
NUP54-211ENST00000512151 ERBB4Q15303 1308 aa12.11□□□□□ -0.47
NUP54-211ENST00000512151 ZNF646O15015 1829 aaPredicted RBP12.1□□□□□ -0.47
NUP54-211ENST00000512151 WNT10BO00744 389 aa12.1□□□□□ -0.47
NUP54-211ENST00000512151 NF2P35240 595 aa12.1□□□□□ -0.47
NUP54-211ENST00000512151 INHBEP58166 350 aa12.1□□□□□ -0.47
NUP54-211ENST00000512151 SP3Q02447 781 aa12.1□□□□□ -0.47
NUP54-211ENST00000512151 SF3B3Q15393 1217 aaKnown RBP12.1□□□□□ -0.47
NUP54-211ENST00000512151 SLC9C1Q4G0N8 1177 aa12.1□□□□□ -0.47
NUP54-211ENST00000512151 NECTIN2Q92692 538 aa12.1□□□□□ -0.47
NUP54-211ENST00000512151 PTPN18Q99952 460 aa12.1□□□□□ -0.47
NUP54-211ENST00000512151 PODXL2Q9NZ53 605 aa12.1□□□□□ -0.47
NUP54-211ENST00000512151 SSC5DA1L4H1 1573 aa12.09□□□□□ -0.47
NUP54-211ENST00000512151 SASH1O94885 1247 aa12.09□□□□□ -0.47
NUP54-211ENST00000512151 COPS6Q7L5N1 327 aa12.09□□□□□ -0.47
NUP54-211ENST00000512151 SH3TC2Q8TF17 1288 aa12.09□□□□□ -0.47
NUP54-211ENST00000512151 XAGE3Q8WTP9 111 aa12.09□□□□□ -0.47
NUP54-211ENST00000512151 DPF3Q92784 378 aa12.09□□□□□ -0.47
NUP54-211ENST00000512151 SLC10A4Q96EP9 437 aa12.09□□□□□ -0.47
NUP54-211ENST00000512151 COL25A1Q9BXS0 654 aaPredicted RBP12.09□□□□□ -0.47
NUP54-211ENST00000512151 ZSWIM8A7E2V4 1837 aa12.09□□□□□ -0.47
NUP54-211ENST00000512151 USP17L3A6NCW0 530 aa12.08□□□□□ -0.48
NUP54-211ENST00000512151 USP17L4A6NCW7 530 aa12.08□□□□□ -0.48
NUP54-211ENST00000512151 G3V3G9 751 aa12.08□□□□□ -0.48
NUP54-211ENST00000512151 U2AF1L5P0DN76 240 aaPredicted RBP12.08□□□□□ -0.48
NUP54-211ENST00000512151 EIF2S2P20042 333 aaKnown RBP12.08□□□□□ -0.48
NUP54-211ENST00000512151 RPS8P62241 208 aaKnown RBP12.08□□□□□ -0.48
NUP54-211ENST00000512151 U2AF1Q01081 240 aaKnown RBP eCLIP12.08□□□□□ -0.48
NUP54-211ENST00000512151 AIMP1Q12904 312 aaKnown RBP12.08□□□□□ -0.48
NUP54-211ENST00000512151 DCAF8Q5TAQ9 597 aa12.08□□□□□ -0.48
NUP54-211ENST00000512151 USP17L1Q7RTZ2 530 aa12.08□□□□□ -0.48
NUP54-211ENST00000512151 PNISRQ8TF01 805 aaKnown RBP12.08□□□□□ -0.48
NUP54-211ENST00000512151 FAM89AQ96GI7 184 aa12.08□□□□□ -0.48
NUP54-211ENST00000512151 DLG5Q8TDM6 1919 aa12.08□□□□□ -0.48
NUP54-211ENST00000512151 ZBTB48P10074 688 aaPredicted RBP12.07□□□□□ -0.48
NUP54-211ENST00000512151 HSP90AB3PQ58FF7 597 aa12.07□□□□□ -0.48
NUP54-211ENST00000512151 SEC31BQ9NQW1 1179 aa12.07□□□□□ -0.48
NUP54-211ENST00000512151 GGA1Q9UJY5 639 aa12.07□□□□□ -0.48
NUP54-211ENST00000512151 MAP3K11Q16584 847 aa12.06□□□□□ -0.48
NUP54-211ENST00000512151 RTL5Q5HYW3 569 aaPredicted RBP12.06□□□□□ -0.48
NUP54-211ENST00000512151 DACT2Q5SW24 774 aa12.06□□□□□ -0.48
NUP54-211ENST00000512151 UBE2Q1Q7Z7E8 422 aa12.06□□□□□ -0.48
NUP54-211ENST00000512151 NBPF11Q86T75 865 aa12.06□□□□□ -0.48
NUP54-211ENST00000512151 ANKIB1Q9P2G1 1089 aa12.06□□□□□ -0.48
NUP54-211ENST00000512151 ZBTB7BO15156 539 aaPredicted RBP12.05□□□□□ -0.48
NUP54-211ENST00000512151 EVX2Q03828 476 aa12.05□□□□□ -0.48
NUP54-211ENST00000512151 MTFR1Q15390 333 aa12.05□□□□□ -0.48
NUP54-211ENST00000512151 ZBED3Q96IU2 234 aaPredicted RBP12.05□□□□□ -0.48
NUP54-211ENST00000512151 ARHGAP39Q9C0H5 1083 aa12.05□□□□□ -0.48
NUP54-211ENST00000512151 TESPA1A2RU30 521 aaPredicted RBP12.05□□□□□ -0.48
NUP54-211ENST00000512151 LAMA3Q16787 3333 aa12.04□□□□□ -0.48
NUP54-211ENST00000512151 ATP5J2-PTCD1G3V325 749 aa12.04□□□□□ -0.48
NUP54-211ENST00000512151 Q7L0L9 218 aa12.04□□□□□ -0.48
NUP54-211ENST00000512151 PODNQ7Z5L7 613 aa12.04□□□□□ -0.48
NUP54-211ENST00000512151 APOBEC3FQ8IUX4 373 aaKnown RBP12.04□□□□□ -0.48
NUP54-211ENST00000512151 ISCA1Q9BUE6 129 aa12.04□□□□□ -0.48
NUP54-211ENST00000512151 TIMELESSQ9UNS1 1208 aa12.04□□□□□ -0.48
NUP54-211ENST00000512151 OTUD7BQ6GQQ9 843 aa12.03□□□□□ -0.48
NUP54-211ENST00000512151 MS4A4AQ96JQ5 239 aa12.03□□□□□ -0.48
NUP54-211ENST00000512151 CFAP53Q96M91 514 aa12.03□□□□□ -0.48
NUP54-211ENST00000512151 DEFB129Q9H1M3 183 aa12.03□□□□□ -0.48
NUP54-211ENST00000512151 NUDCQ9Y266 331 aa12.03□□□□□ -0.48
NUP54-211ENST00000512151 A0A1W2PPC1 479 aa12.02□□□□□ -0.49
NUP54-211ENST00000512151 IRS4O14654 1257 aaPredicted RBP12.02□□□□□ -0.49
NUP54-211ENST00000512151 OGFOD1Q8N543 542 aa12.02□□□□□ -0.49
NUP54-211ENST00000512151 BRI3BPQ8WY22 251 aa12.02□□□□□ -0.49
NUP54-211ENST00000512151 FBXW7Q969H0 707 aa12.02□□□□□ -0.49
NUP54-211ENST00000512151 STAP2Q9UGK3 403 aa12.02□□□□□ -0.49
NUP54-211ENST00000512151 PCDHAC2Q9Y5I4 1007 aa12.02□□□□□ -0.49
NUP54-211ENST00000512151 OTOFQ9HC10 1997 aa12.01□□□□□ -0.49
NUP54-211ENST00000512151 USP2O75604 605 aaPredicted RBP12.01□□□□□ -0.49
NUP54-211ENST00000512151 DEFB123Q8N688 67 aa12.01□□□□□ -0.49
NUP54-211ENST00000512151 STXBP5LQ9Y2K9 1186 aa12.01□□□□□ -0.49
NUP54-211ENST00000512151 XDHP47989 1333 aa12□□□□□ -0.49
NUP54-211ENST00000512151 AOX1Q06278 1338 aa12□□□□□ -0.49
NUP54-211ENST00000512151 COL1A1P02452 1464 aaPredicted RBP12□□□□□ -0.49
NUP54-211ENST00000512151 ATP2B4P23634 1241 aa12□□□□□ -0.49
NUP54-211ENST00000512151 TAF1CQ15572 869 aaPredicted RBP12□□□□□ -0.49
NUP54-211ENST00000512151 NBPF12Q5TAG4 269 aaPredicted RBP12□□□□□ -0.49
NUP54-211ENST00000512151 TXNRD3Q86VQ6 643 aa12□□□□□ -0.49
NUP54-211ENST00000512151 KIAA0825Q8IV33 1275 aa12□□□□□ -0.49
NUP54-211ENST00000512151 FAM43AQ8N2R8 423 aa12□□□□□ -0.49
NUP54-211ENST00000512151 CCDC85AQ96PX6 553 aaPredicted RBP12□□□□□ -0.49
NUP54-211ENST00000512151 HTATIP2Q9BUP3 242 aa12□□□□□ -0.49
NUP54-211ENST00000512151 TSPYL4Q9UJ04 414 aa12□□□□□ -0.49
NUP54-211ENST00000512151 PPP1R12BO60237 982 aaPredicted RBP11.99□□□□□ -0.49
NUP54-211ENST00000512151 ECM2O94769 699 aaPredicted RBP11.99□□□□□ -0.49
NUP54-211ENST00000512151 CTGFP29279 349 aa11.99□□□□□ -0.49
NUP54-211ENST00000512151 KRT24Q2M2I5 525 aa11.99□□□□□ -0.49
NUP54-211ENST00000512151 STRIP1Q5VSL9 837 aa11.99□□□□□ -0.49
NUP54-211ENST00000512151 OPTNQ96CV9 577 aa11.99□□□□□ -0.49
NUP54-211ENST00000512151 ELP3Q9H9T3 547 aa11.99□□□□□ -0.49
NUP54-211ENST00000512151 ZFYVE28Q9HCC9 887 aa11.99□□□□□ -0.49
NUP54-211ENST00000512151 MTMR10Q9NXD2 777 aa11.99□□□□□ -0.49
NUP54-211ENST00000512151 NR2E3Q9Y5X4 410 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms