RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PDCP20941 246 aa13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 CADPSQ9ULU8 1353 aa13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 CEP85LQ5SZL2 805 aa13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 ZSCAN31Q96LW9 406 aaPredicted RBP13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 DESI2Q9BSY9 194 aa13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 LRRCC1Q9C099 1032 aa13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 IL1RAPL2Q9NP60 686 aa13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 PPP6R1Q9UPN7 881 aa13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 ERVK-7P63135 1459 aa13.82□□□□□ -0.2
LIMCH1-213ENST00000511496 PRKAR2BP31323 418 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 IRAK1P51617 712 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 CYP46A1Q9Y6A2 500 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 KDM5AP29375 1690 aaKnown RBP13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 CTAGE5O15320 804 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 DDR1Q08345 913 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 RNF187Q5TA31 235 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 PRPF40BQ6NWY9 871 aaKnown RBP13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 FTOQ9C0B1 505 aaKnown RBP eCLIP13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 NBPF3Q9H094 633 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 SH2B1Q9NRF2 756 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 BSDC1Q9NW68 430 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 SERPINC1P01008 464 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 GBP2P32456 591 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 DPCR1Q3MIW9 517 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 CFAP100Q494V2 611 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 CCDC26Q8TAB7 109 aa13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 BAG1Q99933 345 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 YTHDC2Q9H6S0 1430 aaKnown RBP13.81□□□□□ -0.2
LIMCH1-213ENST00000511496 CUTAO60888 179 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 ZNF202O95125 648 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 HMOX1P09601 288 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 ATP1A3P13637 1013 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 NUTM1Q86Y26 1132 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 CEP112Q8N8E3 955 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 SCLT1Q96NL6 688 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 LZTFL1Q9NQ48 299 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 MIS18AQ9NYP9 233 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 TPCN1Q9ULQ1 816 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 TROQ12816 1431 aaPredicted RBP13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 ATP10DQ9P241 1426 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 PBRM1Q86U86 1689 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 PPP1R12BO60237 982 aaPredicted RBP13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 SYF2O95926 243 aaKnown RBP13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 FANCCQ00597 558 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 SPDL1Q96EA4 605 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 GOLPH3LQ9H4A5 285 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 KLC4Q9NSK0 619 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 H3BQV1 296 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 CLSTN1O94985 981 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 CDR1P51861 262 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 NAP1L1P55209 391 aaKnown RBP13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 GRIK3Q13003 919 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 IFFO2Q5TF58 517 aa13.8□□□□□ -0.2
LIMCH1-213ENST00000511496 POTEB2H3BUK9 544 aa13.79□□□□□ -0.2
LIMCH1-213ENST00000511496 AKAP17AQ02040 695 aaKnown RBP13.79□□□□□ -0.2
LIMCH1-213ENST00000511496 FAM76AQ8TAV0 307 aa13.79□□□□□ -0.2
LIMCH1-213ENST00000511496 PPRC1Q5VV67 1664 aaKnown RBP13.79□□□□□ -0.2
LIMCH1-213ENST00000511496 DIAPH1O60610 1272 aaKnown RBP13.79□□□□□ -0.2
LIMCH1-213ENST00000511496 KIF4BQ2VIQ3 1234 aa13.79□□□□□ -0.2
LIMCH1-213ENST00000511496 TOGARAM2Q6ZUX3 1019 aa13.79□□□□□ -0.2
LIMCH1-213ENST00000511496 GBP3Q9H0R5 595 aa13.79□□□□□ -0.2
LIMCH1-213ENST00000511496 SOS1Q07889 1333 aaPredicted RBP13.79□□□□□ -0.2
LIMCH1-213ENST00000511496 TOP1P11387 765 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 USP5P45974 858 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 UBASH3AP57075 661 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 GNGT1P63211 74 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 HSP90AA4PQ58FG1 418 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 SSH2Q76I76 1423 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 MYO5CQ9NQX4 1742 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 ANKRD33BA6NCL7 494 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 RTN2O75298 545 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 RWDD2BP57060 319 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 RBBP5Q15291 538 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 PLPPR3Q6T4P5 718 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 MICAL1Q8TDZ2 1067 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 KIFC2Q96AC6 838 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 DDX20Q9UHI6 824 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 RAB21Q9UL25 225 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 NDUFAB1O14561 156 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 FSIP1Q8NA03 581 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 DPF2Q92785 391 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 RPS6KL1Q9Y6S9 549 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 CDHR2Q9BYE9 1310 aa13.78□□□□□ -0.2
LIMCH1-213ENST00000511496 PDHBP11177 359 aa13.77□□□□□ -0.2
LIMCH1-213ENST00000511496 EZRP15311 586 aaKnown RBP13.77□□□□□ -0.2
LIMCH1-213ENST00000511496 FNTAP49354 379 aa13.77□□□□□ -0.2
LIMCH1-213ENST00000511496 PAIP2Q9BPZ3 127 aaKnown RBP13.77□□□□□ -0.2
LIMCH1-213ENST00000511496 ARHGAP6O43182 974 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 ME1P48163 572 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 PHACTR3Q96KR7 559 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 CAPS2Q9BXY5 557 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 LSG1Q9H089 658 aaKnown RBP13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 NUP153P49790 1475 aaKnown RBP13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 MYOM2P54296 1465 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 GOLGA6CA6NDK9 693 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 GOLGA6DP0CG33 693 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 MRPL12P52815 198 aaKnown RBP13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 GOLGA6AQ9NYA3 693 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms