RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 DCAF5Q96JK2 942 aa11.61□□□□□ -0.55
USP53-207ENST00000510852 AVENQ9NQS1 362 aaPredicted RBP11.61□□□□□ -0.55
USP53-207ENST00000510852 ZBTB47Q9UFB7 747 aaPredicted RBP11.61□□□□□ -0.55
USP53-207ENST00000510852 KDM6AO15550 1401 aaPredicted RBP11.61□□□□□ -0.55
USP53-207ENST00000510852 TNS2Q63HR2 1409 aa11.61□□□□□ -0.55
USP53-207ENST00000510852 CCDC92Q53HC0 331 aaPredicted RBP11.6□□□□□ -0.55
USP53-207ENST00000510852 L1TD1Q5T7N2 865 aaKnown RBP11.6□□□□□ -0.55
USP53-207ENST00000510852 TTC30AQ86WT1 665 aa11.6□□□□□ -0.55
USP53-207ENST00000510852 RAVER1Q8IY67 606 aaKnown RBP11.6□□□□□ -0.55
USP53-207ENST00000510852 NOL7Q9UMY1 257 aaKnown RBP11.6□□□□□ -0.55
USP53-207ENST00000510852 AKAP2Q9Y2D5 859 aa11.6□□□□□ -0.55
USP53-207ENST00000510852 CHL1O00533 1208 aa11.6□□□□□ -0.55
USP53-207ENST00000510852 ALDH1L2Q3SY69 923 aa11.6□□□□□ -0.55
USP53-207ENST00000510852 ZNF772Q68DY9 489 aaPredicted RBP11.6□□□□□ -0.55
USP53-207ENST00000510852 FBXO33Q7Z6M2 555 aa11.6□□□□□ -0.55
USP53-207ENST00000510852 ALDH8A1Q9H2A2 487 aaPredicted RBP11.6□□□□□ -0.55
USP53-207ENST00000510852 MBIPQ9NS73 344 aa11.6□□□□□ -0.55
USP53-207ENST00000510852 MIS18AQ9NYP9 233 aa11.6□□□□□ -0.55
USP53-207ENST00000510852 WNK3Q9BYP7 1800 aa11.6□□□□□ -0.55
USP53-207ENST00000510852 GLI3P10071 1580 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 HSD3B2P26439 372 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 ABL2P42684 1182 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 TEFQ10587 303 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 TAF7Q15545 349 aaPredicted RBP11.59□□□□□ -0.55
USP53-207ENST00000510852 ODR4Q5SWX8 454 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 SHANK3Q9BYB0 1731 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 A0A0G2JS52 829 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 NAT2P11245 290 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 ANP32AP39687 249 aaKnown RBP11.59□□□□□ -0.55
USP53-207ENST00000510852 SYCP2LQ5T4T6 812 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 GIGYF2Q6Y7W6 1299 aaKnown RBP11.59□□□□□ -0.55
USP53-207ENST00000510852 ACRBPQ8NEB7 543 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 LRRC37A3O60309 1634 aa11.59□□□□□ -0.55
USP53-207ENST00000510852 VIL1P09327 827 aaKnown RBP11.58□□□□□ -0.56
USP53-207ENST00000510852 PDGFRBP09619 1106 aa11.58□□□□□ -0.56
USP53-207ENST00000510852 SIM2Q14190 667 aaPredicted RBP11.58□□□□□ -0.56
USP53-207ENST00000510852 VPS37AQ8NEZ2 397 aa11.58□□□□□ -0.56
USP53-207ENST00000510852 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.58□□□□□ -0.56
USP53-207ENST00000510852 TSPYL4Q9UJ04 414 aa11.58□□□□□ -0.56
USP53-207ENST00000510852 SLC45A1Q9Y2W3 748 aa11.58□□□□□ -0.56
USP53-207ENST00000510852 AMPD3Q01432 767 aa11.58□□□□□ -0.56
USP53-207ENST00000510852 TSC1Q92574 1164 aa11.58□□□□□ -0.56
USP53-207ENST00000510852 ADAMTS7Q9UKP4 1686 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 IFRD1O00458 451 aaPredicted RBP11.57□□□□□ -0.56
USP53-207ENST00000510852 EXOSC9Q06265 439 aaKnown RBP11.57□□□□□ -0.56
USP53-207ENST00000510852 ZNF467Q7Z7K2 595 aaPredicted RBP11.57□□□□□ -0.56
USP53-207ENST00000510852 MARCH10Q8NA82 808 aaPredicted RBP11.57□□□□□ -0.56
USP53-207ENST00000510852 C8orf48Q96LL4 319 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 IER2Q9BTL4 223 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 REPIN1Q9BWE0 567 aaKnown RBP11.57□□□□□ -0.56
USP53-207ENST00000510852 SLC52A2Q9HAB3 445 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 BABAM1Q9NWV8 329 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 ANAPC4Q9UJX5 808 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 NFATC2IPQ8NCF5 419 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 LSM14AQ8ND56 463 aaKnown RBP11.57□□□□□ -0.56
USP53-207ENST00000510852 BANK1Q8NDB2 785 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 ITFG2Q969R8 447 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 FAM13BQ9NYF5 915 aa11.57□□□□□ -0.56
USP53-207ENST00000510852 BTBD11A6QL63 1104 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 ERVV-2B6SEH9 535 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 HMMRO75330 724 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 COL6A1P12109 1028 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 HOXD11P31277 338 aaPredicted RBP11.56□□□□□ -0.56
USP53-207ENST00000510852 CABP4P57796 275 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 CCDC47Q96A33 483 aaKnown RBP11.56□□□□□ -0.56
USP53-207ENST00000510852 PPP1R12CQ9BZL4 782 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 AS3MTQ9HBK9 375 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 PRR29P0C7W0 189 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 GNALP38405 381 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 CCDC93Q567U6 631 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 CCDC70Q6NSX1 233 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 ILDR1Q86SU0 546 aaPredicted RBP11.56□□□□□ -0.56
USP53-207ENST00000510852 SEPT12Q8IYM1 358 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 PAF1Q8N7H5 531 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 RANBP17Q9H2T7 1088 aaKnown RBP11.56□□□□□ -0.56
USP53-207ENST00000510852 LZTS1Q9Y250 596 aa11.56□□□□□ -0.56
USP53-207ENST00000510852 THSD7AQ9UPZ6 1657 aa11.55□□□□□ -0.56
USP53-207ENST00000510852 FOSP01100 380 aaPredicted RBP11.55□□□□□ -0.56
USP53-207ENST00000510852 RBM6P78332 1123 aaKnown RBP11.55□□□□□ -0.56
USP53-207ENST00000510852 OGFOD1Q8N543 542 aa11.55□□□□□ -0.56
USP53-207ENST00000510852 RGS17Q9UGC6 210 aaPredicted RBP11.55□□□□□ -0.56
USP53-207ENST00000510852 RCAN3Q9UKA8 241 aa11.55□□□□□ -0.56
USP53-207ENST00000510852 SCN11AQ9UI33 1791 aa11.55□□□□□ -0.56
USP53-207ENST00000510852 MRC1P22897 1456 aa11.55□□□□□ -0.56
USP53-207ENST00000510852 PES1O00541 588 aaKnown RBP11.55□□□□□ -0.56
USP53-207ENST00000510852 CDC37Q16543 378 aaPredicted RBP11.55□□□□□ -0.56
USP53-207ENST00000510852 ZC3H12AQ5D1E8 599 aaKnown RBP11.55□□□□□ -0.56
USP53-207ENST00000510852 KCNQ3O43525 872 aa11.54□□□□□ -0.56
USP53-207ENST00000510852 ATICP31939 592 aa11.54□□□□□ -0.56
USP53-207ENST00000510852 MAP2K5Q13163 448 aa11.54□□□□□ -0.56
USP53-207ENST00000510852 GJC2Q5T442 439 aaPredicted RBP11.54□□□□□ -0.56
USP53-207ENST00000510852 LDLRAD1Q5T700 205 aa11.54□□□□□ -0.56
USP53-207ENST00000510852 C8orf58Q8NAV2 365 aa11.54□□□□□ -0.56
USP53-207ENST00000510852 MTMR14Q8NCE2 650 aa11.54□□□□□ -0.56
USP53-207ENST00000510852 SOWAHDA6NJG2 315 aa11.54□□□□□ -0.56
USP53-207ENST00000510852 KRT24Q2M2I5 525 aa11.54□□□□□ -0.56
USP53-207ENST00000510852 TSPYL6Q8N831 410 aa11.54□□□□□ -0.56
USP53-207ENST00000510852 ELL2O00472 640 aaPredicted RBP11.53□□□□□ -0.56
USP53-207ENST00000510852 MTA2O94776 668 aa11.53□□□□□ -0.56
USP53-207ENST00000510852 C10orf62Q5T681 223 aaPredicted RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms