RNA–Protein interactions for RNA: ENST00000509774.5

PTPN20-222, Transcript of protein tyrosine phosphatase, non-receptor type 20, human

TSL 1 (best) BASIC

Gene PTPN20, Length 788 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN20-222	ENST00000509774	HDGFL1	Q5TGJ6	251 aa		13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	CCDC30	Q5VVM6	783 aa		13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	CLEC4G	Q6UXB4	293 aa		13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	C2orf69	Q8N8R5	385 aa		13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	C8orf58	Q8NAV2	365 aa		13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	TSR2	Q969E8	191 aa	Known RBP	13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	ZNF428	Q96B54	188 aa		13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	DBF4	Q9UBU7	674 aa	Predicted RBP	13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	CDHR2	Q9BYE9	1310 aa		13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	NBPF26	B4DH59	902 aa		13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	PPIP5K2	O43314	1243 aa		13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	CT47B1	P0C2W7	299 aa	Predicted RBP	13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	PDIA6	Q15084	440 aa		13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	AOC3	Q16853	763 aa		13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	TWISTNB	Q3B726	338 aa	Predicted RBP	13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	CRY2	Q49AN0	593 aa		13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	NBPF10	Q6P3W6	841 aa	Known RBP	13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	TPTE2	Q6XPS3	522 aa		13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	HYPK	Q9NX55	129 aa		13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	RANBP2	P49792	3224 aa	Known RBP	13.17	□□□□□ -0.3
PTPN20-222	ENST00000509774	ZBED9	Q6R2W3	1325 aa		13.16	□□□□□ -0.3
PTPN20-222	ENST00000509774	ERVV-1	B6SEH8	477 aa		13.16	□□□□□ -0.3
PTPN20-222	ENST00000509774	VAMP4	O75379	141 aa		13.16	□□□□□ -0.3
PTPN20-222	ENST00000509774	KRT24	Q2M2I5	525 aa		13.16	□□□□□ -0.3
PTPN20-222	ENST00000509774	ZNRF3	Q9ULT6	936 aa		13.16	□□□□□ -0.3
PTPN20-222	ENST00000509774	FAM177B	A6PVY3	158 aa		13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	EXOSC9	Q06265	439 aa	Known RBP	13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	GRIPAP1	Q4V328	841 aa		13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	KRT26	Q7Z3Y9	468 aa		13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	RASAL3	Q86YV0	1011 aa		13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	TSPYL6	Q8N831	410 aa		13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	BCL2L13	Q9BXK5	485 aa		13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	CNOT7	Q9UIV1	285 aa	Known RBP	13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	ABCC12	Q96J65	1359 aa		13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	NUP98	P52948	1817 aa		13.15	□□□□□ -0.3
PTPN20-222	ENST00000509774	ADM5	C9JUS6	153 aa		13.14	□□□□□ -0.31
PTPN20-222	ENST00000509774	GPR25	O00155	361 aa		13.14	□□□□□ -0.31
PTPN20-222	ENST00000509774	ELL2	O00472	640 aa	Predicted RBP	13.14	□□□□□ -0.31
PTPN20-222	ENST00000509774	NOM1	Q5C9Z4	860 aa	Known RBP	13.14	□□□□□ -0.31
PTPN20-222	ENST00000509774	LRP10	Q7Z4F1	713 aa		13.14	□□□□□ -0.31
PTPN20-222	ENST00000509774	STK31	Q9BXU1	1019 aa		13.14	□□□□□ -0.31
PTPN20-222	ENST00000509774	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
PTPN20-222	ENST00000509774	ZNF652	Q9Y2D9	606 aa		13.14	□□□□□ -0.31
PTPN20-222	ENST00000509774	PITPNM2	Q9BZ72	1349 aa		13.13	□□□□□ -0.31
PTPN20-222	ENST00000509774	RIC1	Q4ADV7	1423 aa		13.13	□□□□□ -0.31
PTPN20-222	ENST00000509774	C2orf72	A6NCS6	295 aa		13.13	□□□□□ -0.31
PTPN20-222	ENST00000509774	MYL6B	P14649	208 aa		13.13	□□□□□ -0.31
PTPN20-222	ENST00000509774	EN2	P19622	333 aa	Predicted RBP	13.13	□□□□□ -0.31
PTPN20-222	ENST00000509774	PIP4K2A	P48426	406 aa	Predicted RBP	13.13	□□□□□ -0.31
PTPN20-222	ENST00000509774	CHPF2	Q9P2E5	772 aa		13.13	□□□□□ -0.31
PTPN20-222	ENST00000509774	TCERG1	O14776	1098 aa	Known RBP	13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774	RAD17	O75943	681 aa		13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774	EGFR	P00533	1210 aa		13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774	HOXA10	P31260	410 aa	Predicted RBP	13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774	INTS3	Q68E01	1043 aa	Known RBP	13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774	KIF6	Q6ZMV9	814 aa		13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774	SAMD7	Q7Z3H4	446 aa		13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774	CDCA7L	Q96GN5	454 aa		13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774	MAP3K15	Q6ZN16	1313 aa		13.12	□□□□□ -0.31
PTPN20-222	ENST00000509774		H0YGN5	161 aa		13.11	□□□□□ -0.31
PTPN20-222	ENST00000509774		H7C1D1	291 aa		13.11	□□□□□ -0.31
PTPN20-222	ENST00000509774	PPEF1	O14829	653 aa	Predicted RBP	13.11	□□□□□ -0.31
PTPN20-222	ENST00000509774	COPS6	Q7L5N1	327 aa		13.11	□□□□□ -0.31
PTPN20-222	ENST00000509774	ZNF687	Q8N1G0	1237 aa		13.11	□□□□□ -0.31
PTPN20-222	ENST00000509774	VPS33B	Q9H267	617 aa		13.11	□□□□□ -0.31
PTPN20-222	ENST00000509774	FKTN	O75072	461 aa		13.1	□□□□□ -0.31
PTPN20-222	ENST00000509774	DDX58	O95786	925 aa	Known RBP	13.1	□□□□□ -0.31
PTPN20-222	ENST00000509774	ALDH1L2	Q3SY69	923 aa		13.1	□□□□□ -0.31
PTPN20-222	ENST00000509774	HSP90AB3P	Q58FF7	597 aa		13.1	□□□□□ -0.31
PTPN20-222	ENST00000509774	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.1	□□□□□ -0.31
PTPN20-222	ENST00000509774	ANKRD13D	Q6ZTN6	518 aa		13.1	□□□□□ -0.31
PTPN20-222	ENST00000509774	NECTIN2	Q92692	538 aa		13.1	□□□□□ -0.31
PTPN20-222	ENST00000509774	RPGR	Q92834	1020 aa	Known RBP	13.1	□□□□□ -0.31
PTPN20-222	ENST00000509774	R3HDML	Q9H3Y0	253 aa		13.1	□□□□□ -0.31
PTPN20-222	ENST00000509774	YDJC	A8MPS7	323 aa		13.09	□□□□□ -0.31
PTPN20-222	ENST00000509774	GTF2E1	P29083	439 aa	Predicted RBP	13.09	□□□□□ -0.31
PTPN20-222	ENST00000509774	TNIP1	Q15025	636 aa		13.09	□□□□□ -0.31
PTPN20-222	ENST00000509774	PROSER3	Q2NL68	480 aa		13.09	□□□□□ -0.31
PTPN20-222	ENST00000509774	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.09	□□□□□ -0.31
PTPN20-222	ENST00000509774	NUTM1	Q86Y26	1132 aa		13.09	□□□□□ -0.31
PTPN20-222	ENST00000509774	PLBD2	Q8NHP8	589 aa		13.09	□□□□□ -0.31
PTPN20-222	ENST00000509774	XAGE3	Q8WTP9	111 aa		13.09	□□□□□ -0.31
PTPN20-222	ENST00000509774	LAMB4	A4D0S4	1761 aa		13.08	□□□□□ -0.32
PTPN20-222	ENST00000509774	TTLL7	Q6ZT98	887 aa		13.08	□□□□□ -0.32
PTPN20-222	ENST00000509774	DCPS	Q96C86	337 aa	Known RBP	13.08	□□□□□ -0.32
PTPN20-222	ENST00000509774	CRAMP1	Q96RY5	1269 aa		13.08	□□□□□ -0.32
PTPN20-222	ENST00000509774	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.08	□□□□□ -0.32
PTPN20-222	ENST00000509774	RBM27	Q9P2N5	1060 aa	Known RBP	13.08	□□□□□ -0.32
PTPN20-222	ENST00000509774	TAF1	P21675	1872 aa		13.08	□□□□□ -0.32
PTPN20-222	ENST00000509774	LAMB2	P55268	1798 aa		13.07	□□□□□ -0.32
PTPN20-222	ENST00000509774	ANXA1	P04083	346 aa		13.07	□□□□□ -0.32
PTPN20-222	ENST00000509774	TM4SF4	P48230	202 aa		13.07	□□□□□ -0.32
PTPN20-222	ENST00000509774	AIMP1	Q12904	312 aa	Known RBP	13.07	□□□□□ -0.32
PTPN20-222	ENST00000509774	TRIM28	Q13263	835 aa	Known RBP	13.07	□□□□□ -0.32
PTPN20-222	ENST00000509774	HLF	Q16534	295 aa		13.07	□□□□□ -0.32
PTPN20-222	ENST00000509774	PARP10	Q53GL7	1025 aa		13.07	□□□□□ -0.32
PTPN20-222	ENST00000509774	TMC2	Q8TDI7	906 aa		13.07	□□□□□ -0.32
PTPN20-222	ENST00000509774	CDCA5	Q96FF9	252 aa		13.07	□□□□□ -0.32
PTPN20-222	ENST00000509774	UNC80	Q8N2C7	3258 aa		13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms