RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 RBM26Q5T8P6 1007 aaKnown RBP18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 C2orf69Q8N8R5 385 aa18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 ZNF408Q9H9D4 720 aa18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 SPINK5Q9NQ38 1064 aaPredicted RBP18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 PSME4Q14997 1843 aa18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 THSD7BQ9C0I4 1608 aa18.27■□□□□ 0.52
HMGCS1-203ENST00000507004 PITPNM2Q9BZ72 1349 aa18.27■□□□□ 0.52
HMGCS1-203ENST00000507004 SHTN1A0MZ66 631 aa18.27■□□□□ 0.52
HMGCS1-203ENST00000507004 CYP4F22Q6NT55 531 aa18.27■□□□□ 0.52
HMGCS1-203ENST00000507004 GMLQ99445 158 aa18.27■□□□□ 0.52
HMGCS1-203ENST00000507004 SRCIN1Q9C0H9 1055 aa18.27■□□□□ 0.52
HMGCS1-203ENST00000507004 C9orf78Q9NZ63 289 aaPredicted RBP18.27■□□□□ 0.52
HMGCS1-203ENST00000507004 SCN9AQ15858 1988 aa18.27■□□□□ 0.52
HMGCS1-203ENST00000507004 NOGQ13253 232 aa18.26■□□□□ 0.51
HMGCS1-203ENST00000507004 CCDC57Q2TAC2 916 aa18.26■□□□□ 0.51
HMGCS1-203ENST00000507004 GGA3Q9NZ52 723 aa18.26■□□□□ 0.51
HMGCS1-203ENST00000507004 F6X3S4 739 aa18.25■□□□□ 0.51
HMGCS1-203ENST00000507004 FKBP1BP68106 108 aa18.25■□□□□ 0.51
HMGCS1-203ENST00000507004 CHRNDQ07001 517 aa18.25■□□□□ 0.51
HMGCS1-203ENST00000507004 C15orf52Q6ZUT6 534 aaKnown RBP18.25■□□□□ 0.51
HMGCS1-203ENST00000507004 GBA2Q9HCG7 927 aaPredicted RBP18.25■□□□□ 0.51
HMGCS1-203ENST00000507004 MYOZ2Q9NPC6 264 aa18.25■□□□□ 0.51
HMGCS1-203ENST00000507004 HDAC9Q9UKV0 1011 aa18.25■□□□□ 0.51
HMGCS1-203ENST00000507004 PTPRCP08575 1304 aa18.24■□□□□ 0.51
HMGCS1-203ENST00000507004 BRPF1P55201 1214 aaPredicted RBP18.24■□□□□ 0.51
HMGCS1-203ENST00000507004 HUNKP57058 714 aa18.24■□□□□ 0.51
HMGCS1-203ENST00000507004 FOXO4P98177 505 aa18.24■□□□□ 0.51
HMGCS1-203ENST00000507004 GRM1Q13255 1194 aa18.24■□□□□ 0.51
HMGCS1-203ENST00000507004 TAF7LQ5H9L4 462 aa18.24■□□□□ 0.51
HMGCS1-203ENST00000507004 DACT2Q5SW24 774 aa18.24■□□□□ 0.51
HMGCS1-203ENST00000507004 CCDC102AQ96A19 550 aa18.24■□□□□ 0.51
HMGCS1-203ENST00000507004 CHMP3Q9Y3E7 222 aa18.24■□□□□ 0.51
HMGCS1-203ENST00000507004 EGFRP00533 1210 aa18.23■□□□□ 0.51
HMGCS1-203ENST00000507004 SCARF1Q14162 830 aa18.23■□□□□ 0.51
HMGCS1-203ENST00000507004 SLC4A10Q6U841 1118 aa18.23■□□□□ 0.51
HMGCS1-203ENST00000507004 LMBR1LQ6UX01 489 aa18.23■□□□□ 0.51
HMGCS1-203ENST00000507004 HSPA8P11142 646 aaKnown RBP18.22■□□□□ 0.51
HMGCS1-203ENST00000507004 LBX1P52954 281 aa18.22■□□□□ 0.51
HMGCS1-203ENST00000507004 TTLL5Q6EMB2 1281 aa18.22■□□□□ 0.51
HMGCS1-203ENST00000507004 RGMBQ6NW40 437 aa18.22■□□□□ 0.51
HMGCS1-203ENST00000507004 SPEF2Q9C093 1822 aa18.21■□□□□ 0.51
HMGCS1-203ENST00000507004 PCNTO95613 3336 aa18.21■□□□□ 0.51
HMGCS1-203ENST00000507004 ANGEL2Q5VTE6 544 aaKnown RBP18.21■□□□□ 0.51
HMGCS1-203ENST00000507004 LDHAL6AQ6ZMR3 332 aa18.21■□□□□ 0.51
HMGCS1-203ENST00000507004 ZNF804AQ7Z570 1209 aa18.21■□□□□ 0.51
HMGCS1-203ENST00000507004 REM2Q8IYK8 340 aaPredicted RBP18.21■□□□□ 0.51
HMGCS1-203ENST00000507004 ADM5C9JUS6 153 aa18.2■□□□□ 0.5
HMGCS1-203ENST00000507004 CT47B1P0C2W7 299 aaPredicted RBP18.2■□□□□ 0.5
HMGCS1-203ENST00000507004 FBXW7Q969H0 707 aa18.2■□□□□ 0.5
HMGCS1-203ENST00000507004 CDCA5Q96FF9 252 aa18.2■□□□□ 0.5
HMGCS1-203ENST00000507004 CD209Q9NNX6 404 aa18.2■□□□□ 0.5
HMGCS1-203ENST00000507004 CNNM1Q9NRU3 951 aa18.2■□□□□ 0.5
HMGCS1-203ENST00000507004 POLR2AP24928 1970 aaKnown RBP18.2■□□□□ 0.5
HMGCS1-203ENST00000507004 UTYO14607 1347 aa18.2■□□□□ 0.5
HMGCS1-203ENST00000507004 CCER2I3L3R5 266 aa18.19■□□□□ 0.5
HMGCS1-203ENST00000507004 NF2P35240 595 aa18.19■□□□□ 0.5
HMGCS1-203ENST00000507004 FKBP1AP62942 108 aaKnown RBP18.19■□□□□ 0.5
HMGCS1-203ENST00000507004 SLFN5Q08AF3 891 aa18.19■□□□□ 0.5
HMGCS1-203ENST00000507004 ALDH1L2Q3SY69 923 aa18.19■□□□□ 0.5
HMGCS1-203ENST00000507004 TXNRD3Q86VQ6 643 aa18.19■□□□□ 0.5
HMGCS1-203ENST00000507004 MRPL50Q8N5N7 158 aaKnown RBP18.19■□□□□ 0.5
HMGCS1-203ENST00000507004 AOC2O75106 756 aa18.18■□□□□ 0.5
HMGCS1-203ENST00000507004 GTF2IP78347 998 aa18.18■□□□□ 0.5
HMGCS1-203ENST00000507004 IL1R1P14778 569 aa18.17■□□□□ 0.5
HMGCS1-203ENST00000507004 ZNF157P51786 506 aaPredicted RBP18.17■□□□□ 0.5
HMGCS1-203ENST00000507004 UBE4AQ14139 1066 aa18.17■□□□□ 0.5
HMGCS1-203ENST00000507004 APOBEC3FQ8IUX4 373 aaKnown RBP18.17■□□□□ 0.5
HMGCS1-203ENST00000507004 WTIPA6NIX2 430 aaPredicted RBP18.16■□□□□ 0.5
HMGCS1-203ENST00000507004 WNT10BO00744 389 aa18.16■□□□□ 0.5
HMGCS1-203ENST00000507004 RABL6Q3YEC7 729 aaPredicted RBP18.16■□□□□ 0.5
HMGCS1-203ENST00000507004 EPHA10Q5JZY3 1008 aa18.16■□□□□ 0.5
HMGCS1-203ENST00000507004 HDAC5Q9UQL6 1122 aa18.16■□□□□ 0.5
HMGCS1-203ENST00000507004 MROH5Q6ZUA9 1318 aa18.16■□□□□ 0.5
HMGCS1-203ENST00000507004 TAF5LO75529 589 aa18.15■□□□□ 0.5
HMGCS1-203ENST00000507004 MTMR14Q8NCE2 650 aa18.15■□□□□ 0.5
HMGCS1-203ENST00000507004 SAGE1Q9NXZ1 904 aa18.15■□□□□ 0.5
HMGCS1-203ENST00000507004 ASTN2O75129 1339 aaPredicted RBP18.15■□□□□ 0.5
HMGCS1-203ENST00000507004 IRS2Q9Y4H2 1338 aa18.15■□□□□ 0.5
HMGCS1-203ENST00000507004 PAPPA2Q9BXP8 1791 aa18.14■□□□□ 0.5
HMGCS1-203ENST00000507004 COL1A1P02452 1464 aaPredicted RBP18.14■□□□□ 0.5
HMGCS1-203ENST00000507004 MYO1BO43795 1136 aa18.14■□□□□ 0.49
HMGCS1-203ENST00000507004 SLC10A3P09131 477 aa18.14■□□□□ 0.49
HMGCS1-203ENST00000507004 KLRK1P26718 216 aa18.14■□□□□ 0.49
HMGCS1-203ENST00000507004 NBPF9Q3BBW0 867 aa18.14■□□□□ 0.49
HMGCS1-203ENST00000507004 KIAA0825Q8IV33 1275 aa18.14■□□□□ 0.49
HMGCS1-203ENST00000507004 HELBQ8NG08 1087 aaPredicted RBP18.14■□□□□ 0.49
HMGCS1-203ENST00000507004 SSH1Q8WYL5 1049 aa18.14■□□□□ 0.49
HMGCS1-203ENST00000507004 SUCLG2Q96I99 432 aa18.14■□□□□ 0.49
HMGCS1-203ENST00000507004 FAM155AB1AL88 458 aaPredicted RBP18.13■□□□□ 0.49
HMGCS1-203ENST00000507004 SASH1O94885 1247 aa18.13■□□□□ 0.49
HMGCS1-203ENST00000507004 NBPF7P0C2Y1 421 aaPredicted RBP18.13■□□□□ 0.49
HMGCS1-203ENST00000507004 DLGAP5Q15398 846 aa18.13■□□□□ 0.49
HMGCS1-203ENST00000507004 PPP2R3BQ9Y5P8 575 aa18.13■□□□□ 0.49
HMGCS1-203ENST00000507004 CAPN15O75808 1086 aa18.12■□□□□ 0.49
HMGCS1-203ENST00000507004 ZBED3Q96IU2 234 aaPredicted RBP18.12■□□□□ 0.49
HMGCS1-203ENST00000507004 ZNF594Q96JF6 807 aaPredicted RBP18.12■□□□□ 0.49
HMGCS1-203ENST00000507004 MXD3Q9BW11 206 aa18.12■□□□□ 0.49
HMGCS1-203ENST00000507004 FAM205AQ6ZU69 1335 aa18.12■□□□□ 0.49
HMGCS1-203ENST00000507004 PLIN1O60240 522 aa18.11■□□□□ 0.49
HMGCS1-203ENST00000507004 HIBADHP31937 336 aaKnown RBP18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms