RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ZNF277Q9NRM2 450 aaPredicted RBP12.52□□□□□ -0.41
NUP54-203ENST00000504173 RTL9Q8NET4 1388 aa12.52□□□□□ -0.41
NUP54-203ENST00000504173 ANKRD18BA2A2Z9 1011 aa12.51□□□□□ -0.41
NUP54-203ENST00000504173 IRX6P78412 446 aaPredicted RBP12.51□□□□□ -0.41
NUP54-203ENST00000504173 IFIT5Q13325 482 aaKnown RBP12.51□□□□□ -0.41
NUP54-203ENST00000504173 CCDC57Q2TAC2 916 aa12.51□□□□□ -0.41
NUP54-203ENST00000504173 CELF1Q92879 486 aaKnown RBP12.51□□□□□ -0.41
NUP54-203ENST00000504173 ZBTB40Q9NUA8 1239 aa12.51□□□□□ -0.41
NUP54-203ENST00000504173 PITPNM2Q9BZ72 1349 aa12.51□□□□□ -0.41
NUP54-203ENST00000504173 CACNA1SQ13698 1873 aa12.51□□□□□ -0.41
NUP54-203ENST00000504173 PPEF1O14829 653 aaPredicted RBP12.5□□□□□ -0.41
NUP54-203ENST00000504173 IGHMBP2P38935 993 aaKnown RBP12.5□□□□□ -0.41
NUP54-203ENST00000504173 IARSP41252 1262 aaKnown RBP12.5□□□□□ -0.41
NUP54-203ENST00000504173 EPS15P42566 896 aa12.5□□□□□ -0.41
NUP54-203ENST00000504173 TAF7LQ5H9L4 462 aa12.5□□□□□ -0.41
NUP54-203ENST00000504173 ANKRD18AQ8IVF6 992 aa12.5□□□□□ -0.41
NUP54-203ENST00000504173 RTKN2Q8IZC4 609 aa12.5□□□□□ -0.41
NUP54-203ENST00000504173 TAF1P21675 1872 aa12.49□□□□□ -0.41
NUP54-203ENST00000504173 BBOX1O75936 387 aa12.49□□□□□ -0.41
NUP54-203ENST00000504173 RPS8P62241 208 aaKnown RBP12.49□□□□□ -0.41
NUP54-203ENST00000504173 RNF186Q9NXI6 227 aa12.49□□□□□ -0.41
NUP54-203ENST00000504173 TRIOBPQ9H2D6 2365 aa12.48□□□□□ -0.41
NUP54-203ENST00000504173 FAM155AB1AL88 458 aaPredicted RBP12.48□□□□□ -0.41
NUP54-203ENST00000504173 SRGAP3O43295 1099 aa12.48□□□□□ -0.41
NUP54-203ENST00000504173 MTX1Q13505 466 aa12.48□□□□□ -0.41
NUP54-203ENST00000504173 CEP85Q6P2H3 762 aa12.48□□□□□ -0.41
NUP54-203ENST00000504173 TMC4Q7Z404 712 aa12.48□□□□□ -0.41
NUP54-203ENST00000504173 EXOC6Q8TAG9 804 aa12.48□□□□□ -0.41
NUP54-203ENST00000504173 MPHOSPH8Q99549 860 aa12.48□□□□□ -0.41
NUP54-203ENST00000504173 TMX4Q9H1E5 349 aaPredicted RBP12.48□□□□□ -0.41
NUP54-203ENST00000504173 PGAP2Q9UHJ9 254 aa12.48□□□□□ -0.41
NUP54-203ENST00000504173 COL4A1P02462 1669 aa12.48□□□□□ -0.41
NUP54-203ENST00000504173 SNED1Q8TER0 1413 aa12.47□□□□□ -0.41
NUP54-203ENST00000504173 SPEF2Q9C093 1822 aa12.47□□□□□ -0.41
NUP54-203ENST00000504173 PNMA6EA0A0J9YXQ4 647 aa12.47□□□□□ -0.41
NUP54-203ENST00000504173 TRPA1O75762 1119 aa12.47□□□□□ -0.41
NUP54-203ENST00000504173 ATP8B2P98198 1209 aa12.47□□□□□ -0.41
NUP54-203ENST00000504173 JDP2Q8WYK2 163 aa12.47□□□□□ -0.41
NUP54-203ENST00000504173 ZNF594Q96JF6 807 aaPredicted RBP12.47□□□□□ -0.41
NUP54-203ENST00000504173 ATP6V0A2Q9Y487 856 aa12.47□□□□□ -0.41
NUP54-203ENST00000504173 NEFLP07196 543 aa12.46□□□□□ -0.41
NUP54-203ENST00000504173 RFX5P48382 616 aaPredicted RBP12.46□□□□□ -0.41
NUP54-203ENST00000504173 MNX1P50219 401 aaPredicted RBP12.46□□□□□ -0.41
NUP54-203ENST00000504173 EIF6P56537 245 aaKnown RBP12.46□□□□□ -0.41
NUP54-203ENST00000504173 RPAP2Q8IXW5 612 aaPredicted RBP12.46□□□□□ -0.41
NUP54-203ENST00000504173 SP8Q8IXZ3 490 aa12.46□□□□□ -0.41
NUP54-203ENST00000504173 KLHDC4Q8TBB5 520 aa12.46□□□□□ -0.41
NUP54-203ENST00000504173 PSMD1Q99460 953 aa12.46□□□□□ -0.41
NUP54-203ENST00000504173 CNNM1Q9NRU3 951 aa12.46□□□□□ -0.41
NUP54-203ENST00000504173 BSDC1Q9NW68 430 aaPredicted RBP12.46□□□□□ -0.41
NUP54-203ENST00000504173 COL6A3P12111 3177 aa12.46□□□□□ -0.42
NUP54-203ENST00000504173 HMMRO75330 724 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 HUNKP57058 714 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 PTPN12Q05209 780 aaKnown RBP12.45□□□□□ -0.42
NUP54-203ENST00000504173 AAMPQ13685 434 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 CC2D2BQ6DHV5 1058 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 OLFM4Q6UX06 510 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 LDHAL6AQ6ZMR3 332 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 SSH3Q8TE77 659 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 CCDC102AQ96A19 550 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 SIL1Q9H173 461 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 ADARB2Q9NS39 739 aaKnown RBP12.45□□□□□ -0.42
NUP54-203ENST00000504173 PA2G4Q9UQ80 394 aaKnown RBP12.45□□□□□ -0.42
NUP54-203ENST00000504173 COLQQ9Y215 455 aaPredicted RBP12.45□□□□□ -0.42
NUP54-203ENST00000504173 GJA3Q9Y6H8 435 aa12.45□□□□□ -0.42
NUP54-203ENST00000504173 KIF23Q02241 960 aaPredicted RBP12.44□□□□□ -0.42
NUP54-203ENST00000504173 POLA2Q14181 598 aa12.44□□□□□ -0.42
NUP54-203ENST00000504173 RGMBQ6NW40 437 aa12.44□□□□□ -0.42
NUP54-203ENST00000504173 FBXO46Q6PJ61 603 aaPredicted RBP12.44□□□□□ -0.42
NUP54-203ENST00000504173 SLC51AQ86UW1 340 aa12.44□□□□□ -0.42
NUP54-203ENST00000504173 ZC3H15Q8WU90 426 aaKnown RBP12.44□□□□□ -0.42
NUP54-203ENST00000504173 GLIS2Q9BZE0 524 aaPredicted RBP12.44□□□□□ -0.42
NUP54-203ENST00000504173 COPRSQ9NQ92 184 aa12.44□□□□□ -0.42
NUP54-203ENST00000504173 LRRC37AA6NMS7 1700 aa12.44□□□□□ -0.42
NUP54-203ENST00000504173 COL4A5P29400 1685 aa12.44□□□□□ -0.42
NUP54-203ENST00000504173 EYA2O00167 538 aa12.43□□□□□ -0.42
NUP54-203ENST00000504173 LRRC24Q50LG9 513 aa12.43□□□□□ -0.42
NUP54-203ENST00000504173 REM2Q8IYK8 340 aaPredicted RBP12.43□□□□□ -0.42
NUP54-203ENST00000504173 MPNDQ8N594 471 aa12.43□□□□□ -0.42
NUP54-203ENST00000504173 PUS3Q9BZE2 481 aaKnown RBP12.43□□□□□ -0.42
NUP54-203ENST00000504173 FBXO3Q9UK99 471 aa12.43□□□□□ -0.42
NUP54-203ENST00000504173 MINPP1Q9UNW1 487 aa12.43□□□□□ -0.42
NUP54-203ENST00000504173 CIAO1O76071 339 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 GPSM2P81274 684 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 CHRNDQ07001 517 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 OS9Q13438 667 aaPredicted RBP12.42□□□□□ -0.42
NUP54-203ENST00000504173 GRIPAP1Q4V328 841 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 METTL24Q5JXM2 366 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 DPP8Q6V1X1 898 aaPredicted RBP12.42□□□□□ -0.42
NUP54-203ENST00000504173 CDC37L1Q7L3B6 337 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 SIRT2Q8IXJ6 389 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 ANKRD2Q9GZV1 360 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 GPRC5DQ9NZD1 345 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 ANKIB1Q9P2G1 1089 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 NSFL1CQ9UNZ2 370 aaKnown RBP12.42□□□□□ -0.42
NUP54-203ENST00000504173 RIPOR2Q9Y4F9 1068 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 PCDHB15Q9Y5E8 787 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 HTTP42858 3142 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 CEP290O15078 2479 aa12.42□□□□□ -0.42
NUP54-203ENST00000504173 XDHP47989 1333 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms