RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PHKG2P15735 406 aa12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 ATP6V1AP38606 617 aa12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 RTN1Q16799 776 aa12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 SLF2Q8IX21 1173 aa12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 ESR2Q92731 530 aa12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 BMP2KQ9NSY1 1161 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 ANKRD18AQ8IVF6 992 aa12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 SPTLC2O15270 562 aa12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 CRNKL1Q9BZJ0 848 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 CGNQ9P2M7 1197 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 UBXN4Q92575 508 aa12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 SMARCC1Q92922 1105 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-205ENST00000503057 CYP7A1P22680 504 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 CCDC129Q6ZRS4 1044 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 DEF6Q9H4E7 631 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 ARHGAP29Q52LW3 1261 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 PALD1Q9ULE6 856 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 MROH2AA6NES4 1674 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 CCDC194A0A1B0GVG4 234 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 ZNF830Q96NB3 372 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 ERVV-2B6SEH9 535 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 KLHL10Q6JEL2 608 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 ADGRB1O14514 1584 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 CCDC66A2RUB6 948 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 LDHCP07864 332 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 CASQ1P31415 396 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 PPLO60437 1756 aa12.41□□□□□ -0.42
LIMCH1-205ENST00000503057 RTL9Q8NET4 1388 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 GOLGA6L9A6NEM1 432 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 TIMM10P62072 90 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 CHST3Q7LGC8 479 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 MYO3AQ8NEV4 1616 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 EIF5P55010 431 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 IQCEQ6IPM2 695 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 CCDC186Q7Z3E2 898 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 CCDC12Q8WUD4 166 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 TANGO6Q9C0B7 1094 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 KAT14Q9H8E8 782 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 ERBB4Q15303 1308 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 BAG3O95817 575 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 ARHGEF25Q86VW2 580 aa12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 ZNF397Q8NF99 534 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 RPGRQ92834 1020 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-205ENST00000503057 TSPY2A6NKD2 308 aa12.4□□□□□ -0.43
LIMCH1-205ENST00000503057 CCDC178Q5BJE1 867 aa12.4□□□□□ -0.43
LIMCH1-205ENST00000503057 CEP135Q66GS9 1140 aa12.4□□□□□ -0.43
LIMCH1-205ENST00000503057 XAGE2Q96GT9 111 aa12.4□□□□□ -0.43
LIMCH1-205ENST00000503057 DSCC1Q9BVC3 393 aa12.4□□□□□ -0.43
LIMCH1-205ENST00000503057 ZSWIM6Q9HCJ5 1215 aa12.4□□□□□ -0.43
LIMCH1-205ENST00000503057 NPHP4O75161 1426 aaPredicted RBP12.4□□□□□ -0.43
LIMCH1-205ENST00000503057 GSTO1P78417 241 aa12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 IFIT1BQ5T764 474 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 SAMD1Q6SPF0 538 aaPredicted RBP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 RRAGDQ9NQL2 400 aaPredicted RBP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 NIP7Q9Y221 180 aaKnown RBP eCLIP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 APPBP2Q92624 585 aa12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 LSG1Q9H089 658 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 TRMT1Q9NXH9 659 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 CWC15Q9P013 229 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 NCAPD2Q15021 1401 aa12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 KIF5CO60282 957 aa12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 SNW1Q13573 536 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 AOPEPQ8N6M6 819 aa12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 USP32Q8NFA0 1604 aa12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 ADGRL3Q9HAR2 1447 aa12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 EIF3JO75822 258 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 DDB1Q16531 1140 aa12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 MAGEB6Q8N7X4 407 aa12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.39□□□□□ -0.43
LIMCH1-205ENST00000503057 MAGEB6P1A0A0J9YX57 407 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 ITGA6P23229 1130 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 CDR1P51861 262 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 RAB34Q9BZG1 259 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 CLSTN2Q9H4D0 955 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 FRMPD1Q5SYB0 1578 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 GADD45BO75293 160 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 CD2BP2O95400 341 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 CALM1P0DP23 149 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 CALM2P0DP24 149 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 CALM3P0DP25 149 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 FAM160A1Q05DH4 1040 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 EAF2Q96CJ1 260 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 PREX1Q8TCU6 1659 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 REREQ9P2R6 1566 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 PTH1RQ03431 593 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 FAM89AQ96GI7 184 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 TTC12Q9H892 705 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 TMEM63CQ9P1W3 806 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 RBM5P52756 815 aaKnown RBP eCLIP12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 ME3Q16798 604 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 CCDC148Q8NFR7 591 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 FSD2A1L4K1 749 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 NAA16Q6N069 864 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 KIAA1328Q86T90 577 aa12.38□□□□□ -0.43
LIMCH1-205ENST00000503057 SKILP12757 684 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 UBASH3AP57075 661 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 SETQ01105 290 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 PUM3Q15397 648 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms