RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 TERF1P54274 439 aa11.63□□□□□ -0.55
CLIP1-204ENST00000501271 FKBP4Q02790 459 aaKnown RBP eCLIP11.63□□□□□ -0.55
CLIP1-204ENST00000501271 TYRO3Q06418 890 aa11.63□□□□□ -0.55
CLIP1-204ENST00000501271 CHST3Q7LGC8 479 aa11.63□□□□□ -0.55
CLIP1-204ENST00000501271 DNAJC10Q8IXB1 793 aa11.63□□□□□ -0.55
CLIP1-204ENST00000501271 FAM89AQ96GI7 184 aa11.63□□□□□ -0.55
CLIP1-204ENST00000501271 TNMDQ9H2S6 317 aa11.63□□□□□ -0.55
CLIP1-204ENST00000501271 TTC12Q9H892 705 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-204ENST00000501271 ASAP1Q9ULH1 1129 aa11.63□□□□□ -0.55
CLIP1-204ENST00000501271 MYH3P11055 1940 aa11.63□□□□□ -0.55
CLIP1-204ENST00000501271 DDX60Q8IY21 1712 aaKnown RBP11.63□□□□□ -0.55
CLIP1-204ENST00000501271 PTPDC1A2A3K4 754 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 FOXP2O15409 715 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 NR1I2O75469 434 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 CCT2P78371 535 aaKnown RBP11.62□□□□□ -0.55
CLIP1-204ENST00000501271 SCARF1Q14162 830 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 XAGE2Q96GT9 111 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 NCOA5Q9HCD5 579 aaKnown RBP11.62□□□□□ -0.55
CLIP1-204ENST00000501271 RIC1Q4ADV7 1423 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 SALL1Q9NSC2 1324 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 ANKRD36CQ5JPF3 1778 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 AKAP11Q9UKA4 1901 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 PPFIA3O75145 1194 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 EVA1CP58658 441 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 TTC39AQ5SRH9 613 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 RBM43Q6ZSC3 357 aaKnown RBP11.62□□□□□ -0.55
CLIP1-204ENST00000501271 FAM200AQ8TCP9 573 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 BICD2Q8TD16 824 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 CLSTN2Q9H4D0 955 aa11.62□□□□□ -0.55
CLIP1-204ENST00000501271 ZSCAN16Q9H4T2 348 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-204ENST00000501271 DDX19AQ9NUU7 478 aaKnown RBP11.62□□□□□ -0.55
CLIP1-204ENST00000501271 MYO5AQ9Y4I1 1855 aaKnown RBP11.62□□□□□ -0.55
CLIP1-204ENST00000501271 PCCAP05165 728 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-204ENST00000501271 ADD1P35611 737 aaKnown RBP11.61□□□□□ -0.55
CLIP1-204ENST00000501271 TRIM28Q13263 835 aaKnown RBP11.61□□□□□ -0.55
CLIP1-204ENST00000501271 CCDC158Q5M9N0 1113 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 SYNE4Q8N205 404 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 PIGBQ92521 554 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 FTOQ9C0B1 505 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLIP1-204ENST00000501271 NHSL1Q5SYE7 1610 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 HSP90AB3PQ58FF7 597 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 GORABQ5T7V8 394 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 PI16Q6UXB8 463 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 KIF6Q6ZMV9 814 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 LUZP1Q86V48 1076 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 PIBF1Q8WXW3 757 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 PLA2G12BQ9BX93 195 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 KAT6BQ8WYB5 2073 aa11.61□□□□□ -0.55
CLIP1-204ENST00000501271 ZNF335Q9H4Z2 1342 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-204ENST00000501271 CSF1RP07333 972 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 PDIA3P30101 505 aaKnown RBP11.6□□□□□ -0.55
CLIP1-204ENST00000501271 HMGN5P82970 282 aaKnown RBP11.6□□□□□ -0.55
CLIP1-204ENST00000501271 CEBPZQ03701 1054 aaKnown RBP11.6□□□□□ -0.55
CLIP1-204ENST00000501271 ANO6Q4KMQ2 910 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 NAA16Q6N069 864 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-204ENST00000501271 C17orf53Q8N3J3 647 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-204ENST00000501271 ZBTB38Q8NAP3 1195 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-204ENST00000501271 FBXO3Q9UK99 471 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 NAP1L2Q9ULW6 460 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-204ENST00000501271 AKAP2Q9Y2D5 859 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 LRP6O75581 1613 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 ZAP70P43403 619 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 HAND2P61296 217 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 IFIT5Q13325 482 aaKnown RBP11.6□□□□□ -0.55
CLIP1-204ENST00000501271 HLFQ16534 295 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 TAF7LQ5H9L4 462 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 GPHNQ9NQX3 736 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-204ENST00000501271 CFAP45Q9UL16 551 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 NUP98P52948 1817 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 MAP3K15Q6ZN16 1313 aa11.6□□□□□ -0.55
CLIP1-204ENST00000501271 UQCRHLA0A096LP55 91 aa11.59□□□□□ -0.55
CLIP1-204ENST00000501271 UQCRHP07919 91 aa11.59□□□□□ -0.55
CLIP1-204ENST00000501271 WASHC4Q2M389 1173 aa11.59□□□□□ -0.55
CLIP1-204ENST00000501271 VSIG10Q8N0Z9 540 aa11.59□□□□□ -0.55
CLIP1-204ENST00000501271 ZNF274Q96GC6 653 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-204ENST00000501271 CBX8Q9HC52 389 aa11.59□□□□□ -0.55
CLIP1-204ENST00000501271 CARMIL3Q8ND23 1372 aa11.59□□□□□ -0.55
CLIP1-204ENST00000501271 RRP9O43818 475 aaKnown RBP11.59□□□□□ -0.55
CLIP1-204ENST00000501271 GPTP24298 496 aa11.59□□□□□ -0.55
CLIP1-204ENST00000501271 HSP90AA2PQ14568 343 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-204ENST00000501271 SPC24Q8NBT2 197 aa11.59□□□□□ -0.55
CLIP1-204ENST00000501271 PUS7LQ9H0K6 701 aaKnown RBP11.59□□□□□ -0.55
CLIP1-204ENST00000501271 KCNF1Q9H3M0 494 aa11.59□□□□□ -0.55
CLIP1-204ENST00000501271 ZFYP08048 801 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-204ENST00000501271 GUCY1B3Q02153 619 aa11.58□□□□□ -0.56
CLIP1-204ENST00000501271 GIGYF2Q6Y7W6 1299 aaKnown RBP11.58□□□□□ -0.56
CLIP1-204ENST00000501271 ILDR1Q86SU0 546 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-204ENST00000501271 USP28Q96RU2 1077 aa11.58□□□□□ -0.56
CLIP1-204ENST00000501271 TEX13AQ9BXU3 409 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-204ENST00000501271 GREM2Q9H772 168 aa11.58□□□□□ -0.56
CLIP1-204ENST00000501271 CDHR2Q9BYE9 1310 aa11.58□□□□□ -0.56
CLIP1-204ENST00000501271 FGAP02671 866 aa11.58□□□□□ -0.56
CLIP1-204ENST00000501271 FDPSP14324 419 aaKnown RBP11.58□□□□□ -0.56
CLIP1-204ENST00000501271 MCAMP43121 646 aa11.58□□□□□ -0.56
CLIP1-204ENST00000501271 EVCP57679 992 aa11.58□□□□□ -0.56
CLIP1-204ENST00000501271 NOLC1Q14978 699 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLIP1-204ENST00000501271 ATP2B3Q16720 1220 aa11.58□□□□□ -0.56
CLIP1-204ENST00000501271 LRRFIP1Q32MZ4 808 aaKnown RBP11.58□□□□□ -0.56
CLIP1-204ENST00000501271 SASS6Q6UVJ0 657 aa11.58□□□□□ -0.56
CLIP1-204ENST00000501271 FBXL16Q8N461 479 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms