RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-231	ENST00000498751	TTC14	Q96N46	770 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	DBNDD2	Q9BQY9	259 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	SIL1	Q9H173	461 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	HMG20B	Q9P0W2	317 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	CEP126	Q9P2H0	1117 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	ZNF652	Q9Y2D9	606 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	DDX60	Q8IY21	1712 aa	Known RBP	9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	RPAP1	Q9BWH6	1393 aa	Predicted RBP	9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751		A0A1B0GUL7	405 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	ANKRD18B	A2A2Z9	1011 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	IRS4	O14654	1257 aa	Predicted RBP	9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	RPS6KA4	O75676	772 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	NTSR2	O95665	410 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	PDIA4	P13667	645 aa	Known RBP	9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	NUCB2	P80303	420 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	FAM98C	Q17RN3	349 aa	Known RBP	9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	LRRFIP1	Q32MZ4	808 aa	Known RBP	9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	LRRC24	Q50LG9	513 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	SYTL4	Q96C24	671 aa	Predicted RBP	9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	FAM89A	Q96GI7	184 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	C8orf37	Q96NL8	207 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	BOLA2	Q9H3K6	86 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	HELLS	Q9NRZ9	838 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	TRPC5	Q9UL62	973 aa	Predicted RBP	9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	PALD1	Q9ULE6	856 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	SNX14	Q9Y5W7	946 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	BTAF1	O14981	1849 aa		9.23	□□□□□ -0.93
SYNE1-231	ENST00000498751	SBF2	Q86WG5	1849 aa		9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	IGSF3	O75054	1194 aa		9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	ZFY	P08048	801 aa	Predicted RBP	9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	FGFR2	P21802	821 aa		9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	ITGA6	P23229	1130 aa		9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	SF3B3	Q15393	1217 aa	Known RBP	9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	VPS53	Q5VIR6	699 aa		9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	CWC27	Q6UX04	472 aa	Known RBP	9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	JARID2	Q92833	1246 aa	Predicted RBP	9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	SLK	Q9H2G2	1235 aa	Predicted RBP	9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	TRMT112	Q9UI30	125 aa	Known RBP	9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	MROH5	Q6ZUA9	1318 aa		9.22	□□□□□ -0.93
SYNE1-231	ENST00000498751	KCNQ2	O43526	872 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	TAF5L	O75529	589 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	PDE8B	O95263	885 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	SSFA2	P28290	1259 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	NEK4	P51957	841 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	NMI	Q13287	307 aa	Predicted RBP	9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	ZMYM1	Q5SVZ6	1142 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	SUSD4	Q5VX71	490 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	FBXL16	Q8N461	479 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	TMX3	Q96JJ7	454 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	FSD1	Q9BTV5	496 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	DSCC1	Q9BVC3	393 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	UTP14A	Q9BVJ6	771 aa	Known RBP	9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	NARF	Q9UHQ1	456 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	CCDC9	Q9Y3X0	531 aa	Known RBP	9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751	TAF1L	Q8IZX4	1826 aa		9.21	□□□□□ -0.94
SYNE1-231	ENST00000498751		A0A0D9SFI3	127 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	DDX11L8	A8MPP1	907 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	ZKSCAN1	P17029	563 aa	Predicted RBP	9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	PSMA5	P28066	241 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	ARID4A	P29374	1257 aa	Predicted RBP	9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	MCM4	P33991	863 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	PTH1R	Q03431	593 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	KRT32	Q14532	448 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	MCMDC2	Q4G0Z9	681 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	CCDC158	Q5M9N0	1113 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	RNF20	Q5VTR2	975 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	LDHAL6A	Q6ZMR3	332 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	LINC00116	Q8NCU8	138 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	TMC2	Q8TDI7	906 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	ACSBG1	Q96GR2	724 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	PUS3	Q9BZE2	481 aa	Known RBP	9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	GREM2	Q9H772	168 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	PAG1	Q9NWQ8	432 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	TBC1D2B	Q9UPU7	963 aa		9.2	□□□□□ -0.94
SYNE1-231	ENST00000498751	FRAT2	O75474	233 aa	Predicted RBP	9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	MAP4K4	O95819	1239 aa	Predicted RBP	9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	IFIT1	P09914	478 aa	Known RBP	9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	TIMM10	P62072	90 aa		9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	NBR1	Q14596	966 aa		9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	CCDC152	Q4G0S7	254 aa		9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	CREB3L3	Q68CJ9	461 aa		9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	TMED8	Q6PL24	325 aa	Predicted RBP	9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	LPIN2	Q92539	896 aa		9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	XAGE2	Q96GT9	111 aa		9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	ZNF594	Q96JF6	807 aa	Predicted RBP	9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	ZSCAN31	Q96LW9	406 aa	Predicted RBP	9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	FAM227B	Q96M60	508 aa		9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	GBP4	Q96PP9	640 aa		9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	SH2B1	Q9NRF2	756 aa	Predicted RBP	9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	CHMP3	Q9Y3E7	222 aa		9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	RBM8A	Q9Y5S9	174 aa	Known RBP	9.19	□□□□□ -0.94
SYNE1-231	ENST00000498751	SLC27A2	O14975	620 aa		9.18	□□□□□ -0.94
SYNE1-231	ENST00000498751	ZMYM6	O95789	1325 aa		9.18	□□□□□ -0.94
SYNE1-231	ENST00000498751	C4B	P0C0L5	1744 aa		9.18	□□□□□ -0.94
SYNE1-231	ENST00000498751	UQCRFS1P1	P0C7P4	283 aa		9.18	□□□□□ -0.94
SYNE1-231	ENST00000498751	GPT	P24298	496 aa		9.18	□□□□□ -0.94
SYNE1-231	ENST00000498751	HSPA1L	P34931	641 aa		9.18	□□□□□ -0.94
SYNE1-231	ENST00000498751	AFF2	P51816	1311 aa		9.18	□□□□□ -0.94
SYNE1-231	ENST00000498751	ANKRD1	Q15327	319 aa		9.18	□□□□□ -0.94
SYNE1-231	ENST00000498751	TTF1	Q15361	905 aa	Predicted RBP	9.18	□□□□□ -0.94

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