RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 RANGAP1P46060 587 aaPredicted RBP6.55□□□□□ -1.36
USP54-217ENST00000498213 KCNQ4P56696 695 aa6.55□□□□□ -1.36
USP54-217ENST00000498213 RBM6P78332 1123 aaKnown RBP6.55□□□□□ -1.36
USP54-217ENST00000498213 KRTAP1-3Q8IUG1 177 aa6.55□□□□□ -1.36
USP54-217ENST00000498213 CCDC82Q8N4S0 544 aa6.55□□□□□ -1.36
USP54-217ENST00000498213 ABCA6Q8N139 1617 aa6.54□□□□□ -1.36
USP54-217ENST00000498213 SPATA31A6Q5VVP1 1343 aa6.54□□□□□ -1.36
USP54-217ENST00000498213 IDH3AP50213 366 aa6.54□□□□□ -1.36
USP54-217ENST00000498213 FKBP5Q13451 457 aaPredicted RBP6.54□□□□□ -1.36
USP54-217ENST00000498213 RSPO4Q2I0M5 234 aaPredicted RBP6.54□□□□□ -1.36
USP54-217ENST00000498213 C11orf91Q3C1V1 193 aa6.54□□□□□ -1.36
USP54-217ENST00000498213 TMEM164Q5U3C3 297 aa6.54□□□□□ -1.36
USP54-217ENST00000498213 MKNK1Q9BUB5 465 aa6.54□□□□□ -1.36
USP54-217ENST00000498213 IGFLR1Q9H665 355 aa6.54□□□□□ -1.36
USP54-217ENST00000498213 REREQ9P2R6 1566 aa6.53□□□□□ -1.36
USP54-217ENST00000498213 SCO2A0A1W2PP80 73 aa6.53□□□□□ -1.36
USP54-217ENST00000498213 ARSDP51689 593 aa6.53□□□□□ -1.36
USP54-217ENST00000498213 DEFB132Q7Z7B7 95 aa6.53□□□□□ -1.36
USP54-217ENST00000498213 UBE2OQ9C0C9 1292 aaKnown RBP6.53□□□□□ -1.36
USP54-217ENST00000498213 TPSG1Q9NRR2 321 aa6.53□□□□□ -1.36
USP54-217ENST00000498213 RAPGEF6Q8TEU7 1601 aa6.53□□□□□ -1.36
USP54-217ENST00000498213 TNRQ92752 1358 aa6.53□□□□□ -1.36
USP54-217ENST00000498213 ROBO1Q9Y6N7 1651 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 ABCC1P33527 1531 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 CDK13Q14004 1512 aaKnown RBP6.52□□□□□ -1.37
USP54-217ENST00000498213 FAM229AH3BQW9 127 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 M0R082 166 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 ADH7P40394 386 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 CCINQ13939 588 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 NKAPLQ5M9Q1 402 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 ERICH6Q7L0X2 663 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 ZNF417Q8TAU3 575 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 IFT43Q96FT9 208 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 MYO19Q96H55 970 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 C8orf37Q96NL8 207 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 ZNF587Q96SQ5 575 aaPredicted RBP6.52□□□□□ -1.37
USP54-217ENST00000498213 MDFIQ99750 246 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 EFCC1Q9HA90 598 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 POLR1AO95602 1720 aaPredicted RBP6.52□□□□□ -1.37
USP54-217ENST00000498213 TMEM94Q12767 1356 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 MED14O60244 1454 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 MLH3Q9UHC1 1453 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 KDM5CP41229 1560 aa6.52□□□□□ -1.37
USP54-217ENST00000498213 ADARB2-AS1A8MUL3 147 aa6.51□□□□□ -1.37
USP54-217ENST00000498213 PTCD1O75127 700 aaKnown RBP6.51□□□□□ -1.37
USP54-217ENST00000498213 MICAL2O94851 1124 aa6.51□□□□□ -1.37
USP54-217ENST00000498213 SRPK2P78362 688 aaKnown RBP6.51□□□□□ -1.37
USP54-217ENST00000498213 TNFRSF25Q93038 417 aa6.51□□□□□ -1.37
USP54-217ENST00000498213 CXXC1Q9P0U4 656 aaPredicted RBP6.51□□□□□ -1.37
USP54-217ENST00000498213 SLAIN2Q9P270 581 aa6.51□□□□□ -1.37
USP54-217ENST00000498213 BCS1LQ9Y276 419 aa6.51□□□□□ -1.37
USP54-217ENST00000498213 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.51□□□□□ -1.37
USP54-217ENST00000498213 MROH2AA6NES4 1674 aa6.51□□□□□ -1.37
USP54-217ENST00000498213 CLTCQ00610 1675 aaKnown RBP6.51□□□□□ -1.37
USP54-217ENST00000498213 SYNMO15061 1565 aa6.5□□□□□ -1.37
USP54-217ENST00000498213 DYRK3O43781 588 aa6.5□□□□□ -1.37
USP54-217ENST00000498213 NFKB1P19838 968 aa6.5□□□□□ -1.37
USP54-217ENST00000498213 C1QTNF8P60827 252 aa6.5□□□□□ -1.37
USP54-217ENST00000498213 TRIM28Q13263 835 aaKnown RBP6.5□□□□□ -1.37
USP54-217ENST00000498213 OCLNQ16625 522 aa6.5□□□□□ -1.37
USP54-217ENST00000498213 C16orf46Q6P387 395 aa6.5□□□□□ -1.37
USP54-217ENST00000498213 KRT25Q7Z3Z0 450 aa6.5□□□□□ -1.37
USP54-217ENST00000498213 CLP1Q92989 425 aaKnown RBP6.5□□□□□ -1.37
USP54-217ENST00000498213 NACC1Q96RE7 527 aa6.5□□□□□ -1.37
USP54-217ENST00000498213 PPP1R15AO75807 674 aaPredicted RBP6.49□□□□□ -1.37
USP54-217ENST00000498213 ALBP02768 609 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 ATP2B4P23634 1241 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 BRD2P25440 801 aaKnown RBP6.49□□□□□ -1.37
USP54-217ENST00000498213 ARID4AP29374 1257 aaPredicted RBP6.49□□□□□ -1.37
USP54-217ENST00000498213 INPP5BP32019 993 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 COL9A3Q14050 684 aaPredicted RBP6.49□□□□□ -1.37
USP54-217ENST00000498213 FOXD4L6Q3SYB3 417 aaPredicted RBP6.49□□□□□ -1.37
USP54-217ENST00000498213 COX20Q5RI15 118 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 FOXD4L3Q6VB84 417 aaPredicted RBP6.49□□□□□ -1.37
USP54-217ENST00000498213 C8orf86Q6ZUL3 223 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 TREML1Q86YW5 311 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 COL26A1Q96A83 441 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 GSX2Q9BZM3 304 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 PRDM6Q9NQX0 595 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 LRFN2Q9ULH4 789 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 STARD13Q9Y3M8 1113 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 ARHGAP5Q13017 1502 aa6.49□□□□□ -1.37
USP54-217ENST00000498213 PHLPP1O60346 1717 aa6.48□□□□□ -1.37
USP54-217ENST00000498213 LRP5O75197 1615 aa6.48□□□□□ -1.37
USP54-217ENST00000498213 NAA30Q147X3 362 aaPredicted RBP6.48□□□□□ -1.37
USP54-217ENST00000498213 PCSK7Q16549 785 aa6.48□□□□□ -1.37
USP54-217ENST00000498213 RGL4Q8IZJ4 473 aa6.48□□□□□ -1.37
USP54-217ENST00000498213 CMTR1Q8N1G2 835 aaKnown RBP6.48□□□□□ -1.37
USP54-217ENST00000498213 MICALL1Q8N3F8 863 aa6.48□□□□□ -1.37
USP54-217ENST00000498213 DMGDHQ9UI17 866 aaKnown RBP6.48□□□□□ -1.37
USP54-217ENST00000498213 FAM135AQ9P2D6 1515 aa6.48□□□□□ -1.37
USP54-217ENST00000498213 IQGAP1P46940 1657 aa6.48□□□□□ -1.37
USP54-217ENST00000498213 CTTNBP2Q8WZ74 1663 aa6.47□□□□□ -1.37
USP54-217ENST00000498213 RARAP10276 462 aa6.47□□□□□ -1.37
USP54-217ENST00000498213 GRIK4Q16099 956 aa6.47□□□□□ -1.37
USP54-217ENST00000498213 FAM13BQ9NYF5 915 aa6.47□□□□□ -1.37
USP54-217ENST00000498213 SLC6A14Q9UN76 642 aa6.47□□□□□ -1.37
USP54-217ENST00000498213 RTCBQ9Y3I0 505 aaKnown RBP6.47□□□□□ -1.37
USP54-217ENST00000498213 ITSN2Q9NZM3 1697 aa6.46□□□□□ -1.37
USP54-217ENST00000498213 LILRB5O75023 590 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms