RNA–Protein interactions for RNA: ENST00000498077.6

XRN1-214, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 5,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-214ENST00000498077 ESCO1Q5FWF5 840 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 FAM109BQ6ICB4 259 aaPredicted RBP1.81□□□□□ -2.12
XRN1-214ENST00000498077 RETREG3Q86VR2 466 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 BPHLQ86WA6 291 aaPredicted RBP1.81□□□□□ -2.12
XRN1-214ENST00000498077 RPAP2Q8IXW5 612 aaPredicted RBP1.81□□□□□ -2.12
XRN1-214ENST00000498077 SRRM1Q8IYB3 904 aaKnown RBP1.81□□□□□ -2.12
XRN1-214ENST00000498077 ZKSCAN4Q969J2 545 aaPredicted RBP1.81□□□□□ -2.12
XRN1-214ENST00000498077 NRDE2Q9H7Z3 1164 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 TMOD3Q9NYL9 352 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 LRFN1Q9P244 771 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 GPC6Q9Y625 555 aaPredicted RBP1.81□□□□□ -2.12
XRN1-214ENST00000498077 LRRIQ1Q96JM4 1722 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 CUL9Q8IWT3 2517 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 SSU72P8A0A1W2PR75 194 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 TSPY2A6NKD2 308 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 H7C1W4 665 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 RPS6KA4O75676 772 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 ABL1P00519 1130 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 TSPY3P0CV98 308 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 TSPY8P0CW00 308 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 ITIH2P19823 946 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 POLD1P28340 1107 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 ECE1P42892 770 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 TSPY1Q01534 308 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 PKN1Q16512 942 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 BLOC1S3Q6QNY0 202 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 MED25Q71SY5 747 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 NLRP13Q86W25 1043 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 ZNF248Q8NDW4 579 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 SCARF2Q96GP6 870 aaPredicted RBP1.81□□□□□ -2.12
XRN1-214ENST00000498077 DIRC2Q96SL1 478 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 RAPGEFL1Q9UHV5 662 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 ZNF232Q9UNY5 417 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 SLC8A2Q9UPR5 921 aa1.81□□□□□ -2.12
XRN1-214ENST00000498077 GOLGA3Q08378 1498 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 WFS1O76024 890 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 SLC2A2P11168 524 aaPredicted RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 CYP19A1P11511 503 aaPredicted RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 MTMR2Q13614 643 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 RFTN1Q14699 578 aaPredicted RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 HSP90AB4PQ58FF6 505 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 MARC2Q969Z3 335 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 ACSBG1Q96GR2 724 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 UTP3Q9NQZ2 479 aaKnown RBP eCLIP1.8□□□□□ -2.127e-7■■■■■ 129.8
XRN1-214ENST00000498077 MGAT4CQ9UBM8 478 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 MAP3K1Q13233 1512 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 QSER1Q2KHR3 1735 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 STRCP1A6NGW2 1772 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 RBBP6Q7Z6E9 1792 aaKnown RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 CCNYL3P0C7X3 344 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 CDH2P19022 906 aaPredicted RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 TSR1Q2NL82 804 aaKnown RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 PREPLQ4J6C6 727 aaPredicted RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 APBB1IPQ7Z5R6 666 aaPredicted RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 USP37Q86T82 979 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 KBTBD8Q8NFY9 601 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 DDRGK1Q96HY6 314 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 LIN7BQ9HAP6 207 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 USP35Q9P2H5 1018 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 CGNQ9P2M7 1197 aaKnown RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 KIF15Q9NS87 1388 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 NWD2Q9ULI1 1742 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 FDX1P10109 184 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 MZF1P28698 734 aaPredicted RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 KCNH2Q12809 1159 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 PPP2R5EQ16537 467 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 DIEXFQ68CQ4 756 aaKnown RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 SV2AQ7L0J3 742 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 DZIP3Q86Y13 1208 aaKnown RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 CROCCP3Q8IVE0 287 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 MTURNQ8N3F0 131 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 PMFBP1Q8TBY8 1022 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 RAB7BQ96AH8 199 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 BACH2Q9BYV9 841 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 EMILIN1Q9Y6C2 1016 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 SFI1A8K8P3 1242 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 GOLGA8BA8MQT2 603 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 SMAPO00193 183 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 LSM1O15116 133 aaKnown RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 EIF4EBP3O60516 100 aaPredicted RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 APBA1Q02410 837 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 SPAG1Q07617 926 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 TEFQ10587 303 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 INTS3Q68E01 1043 aaKnown RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 KANK3Q6NY19 840 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 GGT6Q6P531 493 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 CCAR1Q8IX12 1150 aaKnown RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 PXYLP1Q8TE99 480 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 CCDC136Q96JN2 1154 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 GZF1Q9H116 711 aaPredicted RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 CNOT7Q9UIV1 285 aaKnown RBP1.8□□□□□ -2.12
XRN1-214ENST00000498077 WDR3Q9UNX4 943 aaKnown RBP eCLIP1.8□□□□□ -2.12
XRN1-214ENST00000498077 RPTORQ8N122 1335 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 PLEKHD1A6NEE1 506 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 SPATA31C2B4DYI2 1134 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 CSB-PGBD3P0DP91 1061 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 ATP4AP20648 1035 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 CPA2P48052 419 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 ITGA8P53708 1063 aa1.8□□□□□ -2.12
XRN1-214ENST00000498077 TDGQ13569 410 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms