RNA–Protein interactions for RNA: ENST00000497977.1

PTPRN-218, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 701 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-218ENST00000497977 CDC37L1Q7L3B6 337 aa12.91□□□□□ -0.34
PTPRN-218ENST00000497977 HELBQ8NG08 1087 aaPredicted RBP12.91□□□□□ -0.34
PTPRN-218ENST00000497977 DCPSQ96C86 337 aaKnown RBP12.91□□□□□ -0.34
PTPRN-218ENST00000497977 CD209Q9NNX6 404 aa12.91□□□□□ -0.34
PTPRN-218ENST00000497977 GNL3LQ9NVN8 582 aaKnown RBP12.91□□□□□ -0.34
PTPRN-218ENST00000497977 LRRFIP2Q9Y608 721 aaKnown RBP12.91□□□□□ -0.34
PTPRN-218ENST00000497977 DLEC1Q9Y238 1755 aa12.91□□□□□ -0.34
PTPRN-218ENST00000497977 LAMB2P55268 1798 aa12.9□□□□□ -0.34
PTPRN-218ENST00000497977 SRGAP3O43295 1099 aa12.9□□□□□ -0.34
PTPRN-218ENST00000497977 G3BP1Q13283 466 aaKnown RBP eCLIP12.9□□□□□ -0.34
PTPRN-218ENST00000497977 ITPRIPQ8IWB1 547 aa12.9□□□□□ -0.34
PTPRN-218ENST00000497977 MICALL2Q8IY33 904 aa12.9□□□□□ -0.34
PTPRN-218ENST00000497977 ANKRD44Q8N8A2 993 aa12.9□□□□□ -0.34
PTPRN-218ENST00000497977 ZBTB12Q9Y330 459 aaPredicted RBP12.9□□□□□ -0.34
PTPRN-218ENST00000497977 BRCA1P38398 1863 aaKnown RBP12.89□□□□□ -0.35
PTPRN-218ENST00000497977 SLC5A1P13866 664 aa12.89□□□□□ -0.35
PTPRN-218ENST00000497977 FKBP1AP62942 108 aaKnown RBP12.89□□□□□ -0.35
PTPRN-218ENST00000497977 PUM3Q15397 648 aaKnown RBP12.89□□□□□ -0.35
PTPRN-218ENST00000497977 TMEM57Q8N5G2 664 aa12.89□□□□□ -0.35
PTPRN-218ENST00000497977 LPIN2Q92539 896 aa12.89□□□□□ -0.35
PTPRN-218ENST00000497977 GPR101Q96P66 508 aaPredicted RBP12.89□□□□□ -0.35
PTPRN-218ENST00000497977 COPRSQ9NQ92 184 aa12.89□□□□□ -0.35
PTPRN-218ENST00000497977 PGAP2Q9UHJ9 254 aa12.89□□□□□ -0.35
PTPRN-218ENST00000497977 TNRC6CQ9HCJ0 1690 aaKnown RBP12.89□□□□□ -0.35
PTPRN-218ENST00000497977 TMEM88BA6NKF7 163 aa12.88□□□□□ -0.35
PTPRN-218ENST00000497977 MYO1BO43795 1136 aa12.88□□□□□ -0.35
PTPRN-218ENST00000497977 IL1R1P14778 569 aa12.88□□□□□ -0.35
PTPRN-218ENST00000497977 GTF2IP78347 998 aa12.88□□□□□ -0.35
PTPRN-218ENST00000497977 PTPN12Q05209 780 aaKnown RBP12.88□□□□□ -0.35
PTPRN-218ENST00000497977 MTX1Q13505 466 aa12.88□□□□□ -0.35
PTPRN-218ENST00000497977 RBM26Q5T8P6 1007 aaKnown RBP12.88□□□□□ -0.35
PTPRN-218ENST00000497977 TBC1D22AQ8WUA7 517 aa12.88□□□□□ -0.35
PTPRN-218ENST00000497977 MEIS3Q99687 375 aa12.88□□□□□ -0.35
PTPRN-218ENST00000497977 DDX19BQ9UMR2 479 aa12.88□□□□□ -0.35
PTPRN-218ENST00000497977 TNNQ9UQP3 1299 aa12.88□□□□□ -0.35
PTPRN-218ENST00000497977 COL11A2P13942 1736 aaPredicted RBP12.88□□□□□ -0.35
PTPRN-218ENST00000497977 ZBTB7BO15156 539 aaPredicted RBP12.87□□□□□ -0.35
PTPRN-218ENST00000497977 PDE3AQ14432 1141 aa12.87□□□□□ -0.35
PTPRN-218ENST00000497977 LRRC24Q50LG9 513 aa12.87□□□□□ -0.35
PTPRN-218ENST00000497977 HSP90AB4PQ58FF6 505 aa12.87□□□□□ -0.35
PTPRN-218ENST00000497977 MAP1SQ66K74 1059 aaPredicted RBP12.87□□□□□ -0.35
PTPRN-218ENST00000497977 SULF1Q8IWU6 871 aa12.87□□□□□ -0.35
PTPRN-218ENST00000497977 PUS3Q9BZE2 481 aaKnown RBP12.87□□□□□ -0.35
PTPRN-218ENST00000497977 CREBZFQ9NS37 354 aa12.87□□□□□ -0.35
PTPRN-218ENST00000497977 CACNA1SQ13698 1873 aa12.87□□□□□ -0.35
PTPRN-218ENST00000497977 DDX60Q8IY21 1712 aaKnown RBP12.86□□□□□ -0.35
PTPRN-218ENST00000497977 CENPBP07199 599 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-218ENST00000497977 ZNF280AP59817 542 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-218ENST00000497977 ATP8B2P98198 1209 aa12.86□□□□□ -0.35
PTPRN-218ENST00000497977 OS9Q13438 667 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-218ENST00000497977 KIF4BQ2VIQ3 1234 aa12.86□□□□□ -0.35
PTPRN-218ENST00000497977 DACT2Q5SW24 774 aa12.86□□□□□ -0.35
PTPRN-218ENST00000497977 MYOZ2Q9NPC6 264 aa12.86□□□□□ -0.35
PTPRN-218ENST00000497977 KCNQ5Q9NR82 932 aa12.86□□□□□ -0.35
PTPRN-218ENST00000497977 HMMRO75330 724 aa12.85□□□□□ -0.35
PTPRN-218ENST00000497977 ITGBL1O95965 494 aaPredicted RBP12.85□□□□□ -0.35
PTPRN-218ENST00000497977 RFX5P48382 616 aaPredicted RBP12.85□□□□□ -0.35
PTPRN-218ENST00000497977 DLGAP5Q15398 846 aa12.85□□□□□ -0.35
PTPRN-218ENST00000497977 TBC1D10BQ4KMP7 808 aaPredicted RBP12.85□□□□□ -0.35
PTPRN-218ENST00000497977 GORABQ5T7V8 394 aa12.85□□□□□ -0.35
PTPRN-218ENST00000497977 SAMD7Q7Z3H4 446 aa12.85□□□□□ -0.35
PTPRN-218ENST00000497977 FBXO33Q7Z6M2 555 aa12.85□□□□□ -0.35
PTPRN-218ENST00000497977 SLC51AQ86UW1 340 aa12.85□□□□□ -0.35
PTPRN-218ENST00000497977 TXNRD3Q86VQ6 643 aa12.85□□□□□ -0.35
PTPRN-218ENST00000497977 RPAP2Q8IXW5 612 aaPredicted RBP12.85□□□□□ -0.35
PTPRN-218ENST00000497977 TDRD7Q8NHU6 1098 aaKnown RBP12.85□□□□□ -0.35
PTPRN-218ENST00000497977 FAM84BQ96KN1 310 aaPredicted RBP12.85□□□□□ -0.35
PTPRN-218ENST00000497977 SIL1Q9H173 461 aa12.85□□□□□ -0.35
PTPRN-218ENST00000497977 SUGT1Q9Y2Z0 365 aa12.85□□□□□ -0.35
PTPRN-218ENST00000497977 SEMA3EO15041 775 aa12.84□□□□□ -0.35
PTPRN-218ENST00000497977 SCARF1Q14162 830 aa12.84□□□□□ -0.35
PTPRN-218ENST00000497977 ATP2B3Q16720 1220 aa12.84□□□□□ -0.35
PTPRN-218ENST00000497977 KLHDC4Q8TBB5 520 aa12.84□□□□□ -0.35
PTPRN-218ENST00000497977 WDR66Q8TBY9 1149 aa12.84□□□□□ -0.35
PTPRN-218ENST00000497977 GMLQ99445 158 aa12.84□□□□□ -0.35
PTPRN-218ENST00000497977 FER1L6Q2WGJ9 1857 aa12.84□□□□□ -0.35
PTPRN-218ENST00000497977 MYH3P11055 1940 aa12.84□□□□□ -0.35
PTPRN-218ENST00000497977 SPEF2Q9C093 1822 aa12.83□□□□□ -0.35
PTPRN-218ENST00000497977 CEP350Q5VT06 3117 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 POTEIP0CG38 1075 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 POTEJP0CG39 1038 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 NF2P35240 595 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 GYG1P46976 350 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 RBM5P52756 815 aaKnown RBP eCLIP12.83□□□□□ -0.36
PTPRN-218ENST00000497977 RRP1P56182 461 aaKnown RBP12.83□□□□□ -0.36
PTPRN-218ENST00000497977 MVPQ14764 893 aaKnown RBP12.83□□□□□ -0.36
PTPRN-218ENST00000497977 DEFB115Q30KQ5 88 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 KRT26Q7Z3Y9 468 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 ERC1Q8IUD2 1116 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 ZGPATQ8N5A5 531 aaKnown RBP12.83□□□□□ -0.36
PTPRN-218ENST00000497977 C2orf69Q8N8R5 385 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 NEUROD6Q96NK8 337 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 MRIQ9BWK5 157 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 DENND2AQ9ULE3 1009 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 FAM205AQ6ZU69 1335 aa12.83□□□□□ -0.36
PTPRN-218ENST00000497977 WTIPA6NIX2 430 aaPredicted RBP12.82□□□□□ -0.36
PTPRN-218ENST00000497977 SNAP23O00161 211 aa12.82□□□□□ -0.36
PTPRN-218ENST00000497977 SURF6O75683 361 aaKnown RBP12.82□□□□□ -0.36
PTPRN-218ENST00000497977 ECE1P42892 770 aa12.82□□□□□ -0.36
PTPRN-218ENST00000497977 MFSD14BQ5SR56 506 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms