RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 LMNB1P20700 586 aa14.68□□□□□ -0.06
CUX1-210ENST00000497815 TIMM10P62072 90 aa14.68□□□□□ -0.06
CUX1-210ENST00000497815 UBE4AQ14139 1066 aa14.68□□□□□ -0.06
CUX1-210ENST00000497815 DOK7Q18PE1 504 aa14.68□□□□□ -0.06
CUX1-210ENST00000497815 TXNRD3Q86VQ6 643 aa14.68□□□□□ -0.06
CUX1-210ENST00000497815 LARGE2Q8N3Y3 721 aa14.68□□□□□ -0.06
CUX1-210ENST00000497815 KIF1BPQ96EK5 621 aa14.68□□□□□ -0.06
CUX1-210ENST00000497815 NEUROD6Q96NK8 337 aa14.68□□□□□ -0.06
CUX1-210ENST00000497815 RNF181Q9P0P0 153 aa14.68□□□□□ -0.06
CUX1-210ENST00000497815 A0A1B0GUL7 405 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 G3V3G9 751 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 IFIT1P09914 478 aaKnown RBP14.67□□□□□ -0.06
CUX1-210ENST00000497815 SLC5A1P13866 664 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 FGFR2P21802 821 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 KIAA2012Q0VF49 1180 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 TNNI3KQ59H18 835 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 DCAF8Q5TAQ9 597 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 C9orf131Q5VYM1 1079 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 B4GALNT3Q6L9W6 998 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 LPIN2Q92539 896 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 LRRCC1Q9C099 1032 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 AKAP2Q9Y2D5 859 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 FPGT-TNNI3KV9GXZ4 949 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 MED23Q9ULK4 1368 aa14.67□□□□□ -0.06
CUX1-210ENST00000497815 ZNF609O15014 1411 aa14.66□□□□□ -0.06
CUX1-210ENST00000497815 ADORA1P30542 326 aa14.66□□□□□ -0.06
CUX1-210ENST00000497815 GYG1P46976 350 aa14.66□□□□□ -0.06
CUX1-210ENST00000497815 GCC1Q96CN9 775 aa14.66□□□□□ -0.06
CUX1-210ENST00000497815 DBNDD1Q9H9R9 158 aa14.66□□□□□ -0.06
CUX1-210ENST00000497815 COL4A5P29400 1685 aa14.65□□□□□ -0.06
CUX1-210ENST00000497815 GORABQ5T7V8 394 aa14.65□□□□□ -0.06
CUX1-210ENST00000497815 ANKRD45Q5TZF3 282 aa14.65□□□□□ -0.06
CUX1-210ENST00000497815 AACSQ86V21 672 aa14.65□□□□□ -0.06
CUX1-210ENST00000497815 NIM1KQ8IY84 436 aa14.65□□□□□ -0.06
CUX1-210ENST00000497815 CLASRPQ8N2M8 674 aaKnown RBP14.65□□□□□ -0.06
CUX1-210ENST00000497815 JDP2Q8WYK2 163 aa14.65□□□□□ -0.06
CUX1-210ENST00000497815 EAF2Q96CJ1 260 aaPredicted RBP14.65□□□□□ -0.06
CUX1-210ENST00000497815 CCDC136Q96JN2 1154 aa14.65□□□□□ -0.06
CUX1-210ENST00000497815 CCDC8Q9H0W5 538 aaPredicted RBP14.65□□□□□ -0.06
CUX1-210ENST00000497815 ZBTB47Q9UFB7 747 aaPredicted RBP14.65□□□□□ -0.06
CUX1-210ENST00000497815 IRS2Q9Y4H2 1338 aa14.65□□□□□ -0.06
CUX1-210ENST00000497815 ECE2O60344 883 aa14.64□□□□□ -0.07
CUX1-210ENST00000497815 BCAMP50895 628 aa14.64□□□□□ -0.07
CUX1-210ENST00000497815 CAVIN4Q5BKX8 364 aa14.64□□□□□ -0.07
CUX1-210ENST00000497815 ZNF804AQ7Z570 1209 aa14.64□□□□□ -0.07
CUX1-210ENST00000497815 VPS37DQ86XT2 251 aa14.64□□□□□ -0.07
CUX1-210ENST00000497815 XAGE2Q96GT9 111 aa14.64□□□□□ -0.07
CUX1-210ENST00000497815 VPS33BQ9H267 617 aa14.64□□□□□ -0.07
CUX1-210ENST00000497815 GPR108Q9NPR9 543 aa14.64□□□□□ -0.07
CUX1-210ENST00000497815 TLR7Q9NYK1 1049 aaKnown RBP14.64□□□□□ -0.07
CUX1-210ENST00000497815 IFIT2P09913 472 aaKnown RBP14.63□□□□□ -0.07
CUX1-210ENST00000497815 HIBADHP31937 336 aaKnown RBP14.63□□□□□ -0.07
CUX1-210ENST00000497815 ERICH6BQ5W0A0 696 aa14.63□□□□□ -0.07
CUX1-210ENST00000497815 C15orf52Q6ZUT6 534 aaKnown RBP14.63□□□□□ -0.07
CUX1-210ENST00000497815 SMC5Q8IY18 1101 aa14.63□□□□□ -0.07
CUX1-210ENST00000497815 FAM84BQ96KN1 310 aaPredicted RBP14.63□□□□□ -0.07
CUX1-210ENST00000497815 DBNDD2Q9BQY9 259 aa14.63□□□□□ -0.07
CUX1-210ENST00000497815 IQSEC3Q9UPP2 1182 aaPredicted RBP14.63□□□□□ -0.07
CUX1-210ENST00000497815 PHKA1P46020 1223 aa14.62□□□□□ -0.07
CUX1-210ENST00000497815 FBXW7Q969H0 707 aa14.62□□□□□ -0.07
CUX1-210ENST00000497815 COA1Q9GZY4 146 aa14.62□□□□□ -0.07
CUX1-210ENST00000497815 CD209Q9NNX6 404 aa14.62□□□□□ -0.07
CUX1-210ENST00000497815 KCNQ5Q9NR82 932 aa14.62□□□□□ -0.07
CUX1-210ENST00000497815 PPP4R2Q9NY27 417 aa14.62□□□□□ -0.07
CUX1-210ENST00000497815 DBNLQ9UJU6 430 aaKnown RBP14.62□□□□□ -0.07
CUX1-210ENST00000497815 ZNRF3Q9ULT6 936 aa14.62□□□□□ -0.07
CUX1-210ENST00000497815 YDJCA8MPS7 323 aa14.61□□□□□ -0.07
CUX1-210ENST00000497815 FRAT2O75474 233 aaPredicted RBP14.61□□□□□ -0.07
CUX1-210ENST00000497815 CCDC102BQ68D86 513 aa14.61□□□□□ -0.07
CUX1-210ENST00000497815 FBXO33Q7Z6M2 555 aa14.61□□□□□ -0.07
CUX1-210ENST00000497815 C16orf71Q8IYS4 520 aaPredicted RBP14.61□□□□□ -0.07
CUX1-210ENST00000497815 LNPKQ9C0E8 428 aa14.61□□□□□ -0.07
CUX1-210ENST00000497815 JAG2Q9Y219 1238 aa14.61□□□□□ -0.07
CUX1-210ENST00000497815 RAD17O75943 681 aa14.6□□□□□ -0.07
CUX1-210ENST00000497815 EIF6P56537 245 aaKnown RBP14.6□□□□□ -0.07
CUX1-210ENST00000497815 TTC39AQ5SRH9 613 aa14.6□□□□□ -0.07
CUX1-210ENST00000497815 SBF1O95248 1867 aa14.6□□□□□ -0.07
CUX1-210ENST00000497815 TIAM2Q8IVF5 1701 aa14.6□□□□□ -0.07
CUX1-210ENST00000497815 ARAP2Q8WZ64 1704 aa14.6□□□□□ -0.07
CUX1-210ENST00000497815 ZNF541Q9H0D2 1346 aa14.6□□□□□ -0.07
CUX1-210ENST00000497815 CCDC88AQ3V6T2 1871 aa14.59□□□□□ -0.07
CUX1-210ENST00000497815 FZD9O00144 591 aa14.59□□□□□ -0.07
CUX1-210ENST00000497815 NUCB1Q02818 461 aa14.59□□□□□ -0.07
CUX1-210ENST00000497815 CHAF1AQ13111 956 aaPredicted RBP14.59□□□□□ -0.07
CUX1-210ENST00000497815 CCDC158Q5M9N0 1113 aa14.59□□□□□ -0.07
CUX1-210ENST00000497815 CENPQQ7L2Z9 268 aaPredicted RBP14.59□□□□□ -0.07
CUX1-210ENST00000497815 PODNQ7Z5L7 613 aa14.59□□□□□ -0.07
CUX1-210ENST00000497815 CHD1LQ86WJ1 897 aa14.59□□□□□ -0.07
CUX1-210ENST00000497815 OTUD7AQ8TE49 926 aaPredicted RBP14.59□□□□□ -0.07
CUX1-210ENST00000497815 GNL3LQ9NVN8 582 aaKnown RBP14.59□□□□□ -0.07
CUX1-210ENST00000497815 GJA3Q9Y6H8 435 aa14.59□□□□□ -0.07
CUX1-210ENST00000497815 KDM2BQ8NHM5 1336 aa14.59□□□□□ -0.07
CUX1-210ENST00000497815 IL1R1P14778 569 aa14.58□□□□□ -0.08
CUX1-210ENST00000497815 GTF2IP78347 998 aa14.58□□□□□ -0.08
CUX1-210ENST00000497815 CXCL9Q07325 125 aa14.58□□□□□ -0.08
CUX1-210ENST00000497815 TDRD7Q8NHU6 1098 aaKnown RBP14.58□□□□□ -0.08
CUX1-210ENST00000497815 UTRNP46939 3433 aa14.58□□□□□ -0.08
CUX1-210ENST00000497815 SCARF1Q14162 830 aa14.57□□□□□ -0.08
CUX1-210ENST00000497815 TSHZ3Q63HK5 1081 aa14.57□□□□□ -0.08
CUX1-210ENST00000497815 CIAPIN1Q6FI81 312 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms