RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 STARD13Q9Y3M8 1113 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 PREX1Q8TCU6 1659 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 DHX29Q7Z478 1369 aaKnown RBP7.45□□□□□ -1.22
CSMD3-208ENST00000497026 MROH1Q8NDA8 1641 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 EIF2AK4Q9P2K8 1649 aaKnown RBP7.45□□□□□ -1.22
CSMD3-208ENST00000497026 ADARB2-AS1A8MUL3 147 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 M0R082 166 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 KRT25Q7Z3Z0 450 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 ZNF417Q8TAU3 575 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 CCDC97Q96F63 343 aaPredicted RBP7.44□□□□□ -1.22
CSMD3-208ENST00000497026 ZNF587Q96SQ5 575 aaPredicted RBP7.44□□□□□ -1.22
CSMD3-208ENST00000497026 MKNK1Q9BUB5 465 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 PLVAPQ9BX97 442 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 UBE2OQ9C0C9 1292 aaKnown RBP7.44□□□□□ -1.22
CSMD3-208ENST00000497026 LRFN2Q9ULH4 789 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 RNF17Q9BXT8 1623 aaKnown RBP7.44□□□□□ -1.22
CSMD3-208ENST00000497026 ALBP02768 609 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 NFKB1P19838 968 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 CEBPAP49715 358 aaPredicted RBP7.44□□□□□ -1.22
CSMD3-208ENST00000497026 CAPN12Q6ZSI9 719 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 TNFRSF25Q93038 417 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 PNMA5Q96PV4 448 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 GSX2Q9BZM3 304 aa7.44□□□□□ -1.22
CSMD3-208ENST00000497026 ACIN1Q9UKV3 1341 aaKnown RBP7.43□□□□□ -1.22
CSMD3-208ENST00000497026 CNTLNQ9NXG0 1405 aa7.43□□□□□ -1.22
CSMD3-208ENST00000497026 C11orf91Q3C1V1 193 aa7.43□□□□□ -1.22
CSMD3-208ENST00000497026 TMEM164Q5U3C3 297 aa7.43□□□□□ -1.22
CSMD3-208ENST00000497026 IER5Q5VY09 327 aa7.43□□□□□ -1.22
CSMD3-208ENST00000497026 DUOX2Q9NRD8 1548 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 FAM229AH3BQW9 127 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 MICAL2O94851 1124 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 TSPY4P0CV99 314 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 TSPY10P0CW01 314 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 INPP5BP32019 993 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 CCINQ13939 588 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 COX20Q5RI15 118 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 MICALL1Q8N3F8 863 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 IFT43Q96FT9 208 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 SAP130Q9H0E3 1048 aa7.42□□□□□ -1.22
CSMD3-208ENST00000497026 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.42□□□□□ -1.22
CSMD3-208ENST00000497026 DEPDC5O75140 1603 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 KDM5DQ9BY66 1539 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 FAM135AQ9P2D6 1515 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 SETD1BQ9UPS6 1966 aaKnown RBP7.41□□□□□ -1.22
CSMD3-208ENST00000497026 ZC3H13Q5T200 1668 aaKnown RBP7.41□□□□□ -1.22
CSMD3-208ENST00000497026 ADGRL2O95490 1459 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 PIK3R2O00459 728 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 ELOAQ14241 798 aaKnown RBP7.41□□□□□ -1.22
CSMD3-208ENST00000497026 NAA30Q147X3 362 aaPredicted RBP7.41□□□□□ -1.22
CSMD3-208ENST00000497026 OCLNQ16625 522 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 SWI5Q1ZZU3 235 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 GGT6Q6P531 493 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 NUDT8Q8WV74 236 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 DNAJB12Q9NXW2 375 aaKnown RBP7.41□□□□□ -1.22
CSMD3-208ENST00000497026 NOP53Q9NZM5 478 aaKnown RBP7.41□□□□□ -1.22
CSMD3-208ENST00000497026 SLC6A14Q9UN76 642 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 CEP152O94986 1710 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 PRDM15P57071 1507 aaPredicted RBP7.41□□□□□ -1.22
CSMD3-208ENST00000497026 PTPRKQ15262 1439 aa7.41□□□□□ -1.22
CSMD3-208ENST00000497026 ZMYM3Q14202 1370 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 KIF15Q9NS87 1388 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 C1QTNF9BB2RNN3 333 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 KIF3BO15066 747 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 SASH3O75995 380 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 ATG7O95352 703 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 ARSDP51689 593 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 CD163Q86VB7 1156 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 TREML1Q86YW5 311 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 MYO19Q96H55 970 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 KRTAP4-12Q9BQ66 201 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 ZFATQ9P243 1243 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 MYO3AQ8NEV4 1616 aa7.4□□□□□ -1.22
CSMD3-208ENST00000497026 ABCC3O15438 1527 aa7.4□□□□□ -1.23
CSMD3-208ENST00000497026 ERBINQ96RT1 1412 aa7.4□□□□□ -1.23
CSMD3-208ENST00000497026 ZNF142P52746 1687 aaPredicted RBP7.4□□□□□ -1.23
CSMD3-208ENST00000497026 OPLAHO14841 1288 aa7.39□□□□□ -1.23
CSMD3-208ENST00000497026 EPB42P16452 691 aa7.39□□□□□ -1.23
CSMD3-208ENST00000497026 TARSP26639 723 aaKnown RBP7.39□□□□□ -1.23
CSMD3-208ENST00000497026 CHRNA4P43681 627 aa7.39□□□□□ -1.23
CSMD3-208ENST00000497026 MLLT1Q03111 559 aaPredicted RBP7.39□□□□□ -1.23
CSMD3-208ENST00000497026 COL9A3Q14050 684 aaPredicted RBP7.39□□□□□ -1.23
CSMD3-208ENST00000497026 RGL4Q8IZJ4 473 aa7.39□□□□□ -1.23
CSMD3-208ENST00000497026 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.39□□□□□ -1.23
CSMD3-208ENST00000497026 SERPINA10Q9UK55 444 aa7.39□□□□□ -1.23
CSMD3-208ENST00000497026 NPATQ14207 1427 aa7.39□□□□□ -1.23
CSMD3-208ENST00000497026 NCOA1Q15788 1441 aa7.39□□□□□ -1.23
CSMD3-208ENST00000497026 CAMSAP1Q5T5Y3 1602 aa7.39□□□□□ -1.23
CSMD3-208ENST00000497026 STRCQ7RTU9 1775 aa7.38□□□□□ -1.23
CSMD3-208ENST00000497026 HSPA2P54652 639 aa7.38□□□□□ -1.23
CSMD3-208ENST00000497026 FAM26DQ5JW98 314 aa7.38□□□□□ -1.23
CSMD3-208ENST00000497026 CMTR1Q8N1G2 835 aaKnown RBP7.38□□□□□ -1.23
CSMD3-208ENST00000497026 PBXIP1Q96AQ6 731 aa7.38□□□□□ -1.23
CSMD3-208ENST00000497026 SLAIN2Q9P270 581 aa7.38□□□□□ -1.23
CSMD3-208ENST00000497026 NAGPAQ9UK23 515 aa7.38□□□□□ -1.23
CSMD3-208ENST00000497026 RTCBQ9Y3I0 505 aaKnown RBP7.38□□□□□ -1.23
CSMD3-208ENST00000497026 UHRF1BP1Q6BDS2 1440 aa7.38□□□□□ -1.23
CSMD3-208ENST00000497026 RRBP1Q9P2E9 1410 aaKnown RBP7.38□□□□□ -1.23
CSMD3-208ENST00000497026 PZPP20742 1482 aa7.38□□□□□ -1.23
CSMD3-208ENST00000497026 VWDEQ8N2E2 1590 aa7.37□□□□□ -1.23
CSMD3-208ENST00000497026 FAM50AQ14320 339 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms