RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 EGFRP00533 1210 aa19.82■□□□□ 0.76
HDAC4-213ENST00000496347 NBPF7P0C2Y1 421 aaPredicted RBP19.82■□□□□ 0.76
HDAC4-213ENST00000496347 RABL6Q3YEC7 729 aaPredicted RBP19.82■□□□□ 0.76
HDAC4-213ENST00000496347 STRIP1Q5VSL9 837 aa19.82■□□□□ 0.76
HDAC4-213ENST00000496347 C15orf52Q6ZUT6 534 aaKnown RBP19.82■□□□□ 0.76
HDAC4-213ENST00000496347 SUCLG2Q96I99 432 aa19.82■□□□□ 0.76
HDAC4-213ENST00000496347 ARAP2Q8WZ64 1704 aa19.82■□□□□ 0.76
HDAC4-213ENST00000496347 USP17L8P0C7I0 530 aa19.81■□□□□ 0.76
HDAC4-213ENST00000496347 HSPA1AP0DMV8 641 aaKnown RBP19.81■□□□□ 0.76
HDAC4-213ENST00000496347 HSPA1BP0DMV9 641 aaKnown RBP19.81■□□□□ 0.76
HDAC4-213ENST00000496347 KLRK1P26718 216 aa19.81■□□□□ 0.76
HDAC4-213ENST00000496347 VEGFBP49765 207 aa19.81■□□□□ 0.76
HDAC4-213ENST00000496347 BRPF1P55201 1214 aaPredicted RBP19.81■□□□□ 0.76
HDAC4-213ENST00000496347 CST9Q5W186 159 aa19.81■□□□□ 0.76
HDAC4-213ENST00000496347 KAZALD1Q96I82 304 aa19.81■□□□□ 0.76
HDAC4-213ENST00000496347 IRS2Q9Y4H2 1338 aa19.8■□□□□ 0.76
HDAC4-213ENST00000496347 MMP14P50281 582 aa19.8■□□□□ 0.76
HDAC4-213ENST00000496347 DEFB115Q30KQ5 88 aa19.8■□□□□ 0.76
HDAC4-213ENST00000496347 DACT2Q5SW24 774 aa19.8■□□□□ 0.76
HDAC4-213ENST00000496347 DIEXFQ68CQ4 756 aaKnown RBP19.8■□□□□ 0.76
HDAC4-213ENST00000496347 LDHAL6AQ6ZMR3 332 aa19.8■□□□□ 0.76
HDAC4-213ENST00000496347 KRT26Q7Z3Y9 468 aa19.8■□□□□ 0.76
HDAC4-213ENST00000496347 TXNRD3Q86VQ6 643 aa19.8■□□□□ 0.76
HDAC4-213ENST00000496347 CNNM1Q9NRU3 951 aa19.8■□□□□ 0.76
HDAC4-213ENST00000496347 TLL2Q9Y6L7 1015 aa19.8■□□□□ 0.76
HDAC4-213ENST00000496347 KIF16BQ96L93 1317 aa19.79■□□□□ 0.76
HDAC4-213ENST00000496347 CELF2O95319 508 aaKnown RBP19.79■□□□□ 0.76
HDAC4-213ENST00000496347 FMR1Q06787 632 aaKnown RBP eCLIP19.79■□□□□ 0.76
HDAC4-213ENST00000496347 DCPSQ96C86 337 aaKnown RBP19.79■□□□□ 0.76
HDAC4-213ENST00000496347 BICC1Q9H694 974 aaKnown RBP19.79■□□□□ 0.76
HDAC4-213ENST00000496347 GGA3Q9NZ52 723 aa19.79■□□□□ 0.76
HDAC4-213ENST00000496347 ECE1P42892 770 aa19.78■□□□□ 0.76
HDAC4-213ENST00000496347 ZNF804AQ7Z570 1209 aa19.78■□□□□ 0.76
HDAC4-213ENST00000496347 ZNF594Q96JF6 807 aaPredicted RBP19.78■□□□□ 0.76
HDAC4-213ENST00000496347 HHIPL1Q96JK4 782 aa19.78■□□□□ 0.76
HDAC4-213ENST00000496347 MYOZ2Q9NPC6 264 aa19.78■□□□□ 0.76
HDAC4-213ENST00000496347 ECM29Q5VYK3 1845 aa19.78■□□□□ 0.76
HDAC4-213ENST00000496347 PITPNM2Q9BZ72 1349 aa19.77■□□□□ 0.76
HDAC4-213ENST00000496347 TAF5LO75529 589 aa19.77■□□□□ 0.76
HDAC4-213ENST00000496347 RBM26Q5T8P6 1007 aaKnown RBP19.77■□□□□ 0.76
HDAC4-213ENST00000496347 SAPCD2Q86UD0 394 aa19.77■□□□□ 0.76
HDAC4-213ENST00000496347 SULF1Q8IWU6 871 aa19.77■□□□□ 0.76
HDAC4-213ENST00000496347 OGFOD1Q8N543 542 aa19.77■□□□□ 0.76
HDAC4-213ENST00000496347 ANKRD44Q8N8A2 993 aa19.77■□□□□ 0.76
HDAC4-213ENST00000496347 API5Q9BZZ5 524 aaKnown RBP19.77■□□□□ 0.76
HDAC4-213ENST00000496347 MROH5Q6ZUA9 1318 aa19.76■□□□□ 0.75
HDAC4-213ENST00000496347 WDR33Q9C0J8 1336 aaKnown RBP19.76■□□□□ 0.75
HDAC4-213ENST00000496347 FBXW7Q969H0 707 aa19.76■□□□□ 0.75
HDAC4-213ENST00000496347 USP44Q9H0E7 712 aa19.76■□□□□ 0.75
HDAC4-213ENST00000496347 CD209Q9NNX6 404 aa19.76■□□□□ 0.75
HDAC4-213ENST00000496347 PAPPA2Q9BXP8 1791 aa19.75■□□□□ 0.75
HDAC4-213ENST00000496347 RARSP54136 660 aaKnown RBP19.75■□□□□ 0.75
HDAC4-213ENST00000496347 TTLL5Q6EMB2 1281 aa19.75■□□□□ 0.75
HDAC4-213ENST00000496347 USP48Q86UV5 1035 aa19.75■□□□□ 0.75
HDAC4-213ENST00000496347 MIER1Q8N108 512 aa19.75■□□□□ 0.75
HDAC4-213ENST00000496347 HELBQ8NG08 1087 aaPredicted RBP19.75■□□□□ 0.75
HDAC4-213ENST00000496347 CAPNS2Q96L46 248 aa19.75■□□□□ 0.75
HDAC4-213ENST00000496347 ZNF408Q9H9D4 720 aa19.75■□□□□ 0.75
HDAC4-213ENST00000496347 ADM5C9JUS6 153 aa19.74■□□□□ 0.75
HDAC4-213ENST00000496347 IL1R1P14778 569 aa19.74■□□□□ 0.75
HDAC4-213ENST00000496347 UBE4AQ14139 1066 aa19.74■□□□□ 0.75
HDAC4-213ENST00000496347 NOB1Q9ULX3 412 aaKnown RBP19.74■□□□□ 0.75
HDAC4-213ENST00000496347 SNAP23O00161 211 aa19.73■□□□□ 0.75
HDAC4-213ENST00000496347 SCARF1Q14162 830 aa19.73■□□□□ 0.75
HDAC4-213ENST00000496347 ANGEL2Q5VTE6 544 aaKnown RBP19.73■□□□□ 0.75
HDAC4-213ENST00000496347 PAXIP1Q6ZW49 1069 aaPredicted RBP19.73■□□□□ 0.75
HDAC4-213ENST00000496347 AIDAQ96BJ3 306 aa19.73■□□□□ 0.75
HDAC4-213ENST00000496347 ASTN2O75129 1339 aaPredicted RBP19.73■□□□□ 0.75
HDAC4-213ENST00000496347 FKBP1AP62942 108 aaKnown RBP19.72■□□□□ 0.75
HDAC4-213ENST00000496347 GTF2IP78347 998 aa19.72■□□□□ 0.75
HDAC4-213ENST00000496347 MAP2K1Q02750 393 aaPredicted RBP19.72■□□□□ 0.75
HDAC4-213ENST00000496347 ARHGAP45Q92619 1136 aa19.72■□□□□ 0.75
HDAC4-213ENST00000496347 MXD3Q9BW11 206 aa19.72■□□□□ 0.75
HDAC4-213ENST00000496347 HDAC9Q9UKV0 1011 aa19.72■□□□□ 0.75
HDAC4-213ENST00000496347 RIPOR2Q9Y4F9 1068 aa19.72■□□□□ 0.75
HDAC4-213ENST00000496347 MYH13Q9UKX3 1938 aa19.72■□□□□ 0.75
HDAC4-213ENST00000496347 UBTFL1P0CB47 393 aaPredicted RBP19.71■□□□□ 0.75
HDAC4-213ENST00000496347 CYP4F22Q6NT55 531 aa19.71■□□□□ 0.75
HDAC4-213ENST00000496347 WBP1LQ9NX94 342 aa19.71■□□□□ 0.75
HDAC4-213ENST00000496347 HDAC5Q9UQL6 1122 aa19.71■□□□□ 0.75
HDAC4-213ENST00000496347 COL1A1P02452 1464 aaPredicted RBP19.71■□□□□ 0.75
HDAC4-213ENST00000496347 PLIN1O60240 522 aa19.7■□□□□ 0.74
HDAC4-213ENST00000496347 KIAA0825Q8IV33 1275 aa19.7■□□□□ 0.74
HDAC4-213ENST00000496347 VGLL2Q8N8G2 317 aa19.7■□□□□ 0.74
HDAC4-213ENST00000496347 CDCA5Q96FF9 252 aa19.7■□□□□ 0.74
HDAC4-213ENST00000496347 PUS3Q9BZE2 481 aaKnown RBP19.7■□□□□ 0.74
HDAC4-213ENST00000496347 GBA2Q9HCG7 927 aaPredicted RBP19.7■□□□□ 0.74
HDAC4-213ENST00000496347 WNT10BO00744 389 aa19.69■□□□□ 0.74
HDAC4-213ENST00000496347 HUNKP57058 714 aa19.69■□□□□ 0.74
HDAC4-213ENST00000496347 HNRNPUQ00839 825 aaKnown RBP eCLIP19.69■□□□□ 0.74
HDAC4-213ENST00000496347 METTL24Q5JXM2 366 aa19.69■□□□□ 0.74
HDAC4-213ENST00000496347 IFFO2Q5TF58 517 aa19.69■□□□□ 0.74
HDAC4-213ENST00000496347 FOXN1O15353 648 aa19.68■□□□□ 0.74
HDAC4-213ENST00000496347 MAP2K2P36507 400 aa19.68■□□□□ 0.74
HDAC4-213ENST00000496347 CTCFP49711 727 aaPredicted RBP19.68■□□□□ 0.74
HDAC4-213ENST00000496347 NBPF9Q3BBW0 867 aa19.68■□□□□ 0.74
HDAC4-213ENST00000496347 CERS5Q8N5B7 392 aa19.68■□□□□ 0.74
HDAC4-213ENST00000496347 C2orf69Q8N8R5 385 aa19.68■□□□□ 0.74
HDAC4-213ENST00000496347 FAM205AQ6ZU69 1335 aa19.68■□□□□ 0.74
HDAC4-213ENST00000496347 IPO8O15397 1037 aaKnown RBP19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms