RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 RGS22Q8NE09 1264 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 MNS1Q8NEH6 495 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 LINS1Q8NG48 757 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 BOLA2Q9H3K6 86 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 IFNKQ9P0W0 207 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 FEZ2Q9UHY8 353 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-230ENST00000495090 MAP3K2Q9Y2U5 619 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 COL15A1P39059 1388 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 NEDD4P46934 1319 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 PTPDC1A2A3K4 754 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 GOLGA6L9A6NEM1 432 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 GRM8O00222 908 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 CTDNEP1O95476 244 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 YEATS4O95619 227 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 ATP5JP18859 108 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 DHX32Q7L7V1 743 aaKnown RBP11.24□□□□□ -0.61
SYNE1-230ENST00000495090 HOMER1Q86YM7 354 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 GPR161Q8N6U8 529 aaKnown RBP11.24□□□□□ -0.61
SYNE1-230ENST00000495090 KCNG4Q8TDN1 519 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 MPHOSPH8Q99549 860 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 SDF4Q9BRK5 362 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 CCDC8Q9H0W5 538 aaPredicted RBP11.24□□□□□ -0.61
SYNE1-230ENST00000495090 PLEKHG1Q9ULL1 1385 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 UBR1Q8IWV7 1749 aa11.24□□□□□ -0.61
SYNE1-230ENST00000495090 NPHP1O15259 732 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 CBFA2T2O43439 604 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 CEBPZQ03701 1054 aaKnown RBP11.23□□□□□ -0.61
SYNE1-230ENST00000495090 NCAPHQ15003 741 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 DPCR1Q3MIW9 517 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 FBXL16Q8N461 479 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 TLR7Q9NYK1 1049 aaKnown RBP11.23□□□□□ -0.61
SYNE1-230ENST00000495090 PCDHA7Q9UN72 937 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 HEG1Q9ULI3 1381 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 ANKARQ7Z5J8 1434 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 ZSCAN12O43309 604 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 TBC1D8O95759 1140 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 CYP21A2P08686 494 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 JAKMIP3Q5VZ66 844 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 ILDR1Q86SU0 546 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-230ENST00000495090 ZNF274Q96GC6 653 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-230ENST00000495090 KAZALD1Q96I82 304 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 SUCLG2Q96I99 432 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 FTOQ9C0B1 505 aaKnown RBP eCLIP11.23□□□□□ -0.61
SYNE1-230ENST00000495090 BCL11BQ9C0K0 894 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-230ENST00000495090 POLR3EQ9NVU0 708 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 CWC15Q9P013 229 aaKnown RBP11.23□□□□□ -0.61
SYNE1-230ENST00000495090 PARP3Q9Y6F1 533 aa11.23□□□□□ -0.61
SYNE1-230ENST00000495090 SH3TC1Q8TE82 1336 aa11.22□□□□□ -0.61
SYNE1-230ENST00000495090 MCMDC2Q4G0Z9 681 aa11.22□□□□□ -0.61
SYNE1-230ENST00000495090 CC2D1AQ6P1N0 951 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-230ENST00000495090 REXO1L1PQ8IX06 675 aa11.22□□□□□ -0.61
SYNE1-230ENST00000495090 MSL3Q8N5Y2 521 aaKnown RBP11.22□□□□□ -0.61
SYNE1-230ENST00000495090 IQUBQ8NA54 791 aa11.22□□□□□ -0.61
SYNE1-230ENST00000495090 LINC00301Q8NCQ3 95 aa11.22□□□□□ -0.61
SYNE1-230ENST00000495090 EXOC4Q96A65 974 aa11.22□□□□□ -0.61
SYNE1-230ENST00000495090 BICC1Q9H694 974 aaKnown RBP11.22□□□□□ -0.61
SYNE1-230ENST00000495090 EFCC1Q9HA90 598 aa11.22□□□□□ -0.61
SYNE1-230ENST00000495090 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-230ENST00000495090 ZNF609O15014 1411 aa11.22□□□□□ -0.61
SYNE1-230ENST00000495090 CARMIL3Q8ND23 1372 aa11.21□□□□□ -0.61
SYNE1-230ENST00000495090 SLC3A2P08195 630 aaKnown RBP11.21□□□□□ -0.61
SYNE1-230ENST00000495090 NDUFA8P51970 172 aa11.21□□□□□ -0.61
SYNE1-230ENST00000495090 FANCCQ00597 558 aa11.21□□□□□ -0.61
SYNE1-230ENST00000495090 EXOSC10Q01780 885 aaKnown RBP11.21□□□□□ -0.61
SYNE1-230ENST00000495090 AK7Q96M32 723 aa11.21□□□□□ -0.61
SYNE1-230ENST00000495090 LAMA4Q16363 1823 aa11.21□□□□□ -0.61
SYNE1-230ENST00000495090 LMTK3Q96Q04 1460 aa11.21□□□□□ -0.61
SYNE1-230ENST00000495090 VGLL3A8MV65 326 aa11.21□□□□□ -0.62
SYNE1-230ENST00000495090 ARHGAP6O43182 974 aa11.21□□□□□ -0.62
SYNE1-230ENST00000495090 DDX58O95786 925 aaKnown RBP11.21□□□□□ -0.62
SYNE1-230ENST00000495090 OAS2P29728 719 aaKnown RBP11.21□□□□□ -0.62
SYNE1-230ENST00000495090 EVCP57679 992 aa11.21□□□□□ -0.62
SYNE1-230ENST00000495090 MAP3K9P80192 1104 aa11.21□□□□□ -0.62
SYNE1-230ENST00000495090 SMC1AQ14683 1233 aaKnown RBP11.21□□□□□ -0.62
SYNE1-230ENST00000495090 RSRC2Q7L4I2 434 aaKnown RBP11.21□□□□□ -0.62
SYNE1-230ENST00000495090 BRAPQ7Z569 592 aa11.21□□□□□ -0.62
SYNE1-230ENST00000495090 NGDNQ8NEJ9 315 aaKnown RBP11.21□□□□□ -0.62
SYNE1-230ENST00000495090 GOLGA5Q8TBA6 731 aa11.21□□□□□ -0.62
SYNE1-230ENST00000495090 RABGGTAQ92696 567 aa11.21□□□□□ -0.62
SYNE1-230ENST00000495090 DSCC1Q9BVC3 393 aa11.21□□□□□ -0.62
SYNE1-230ENST00000495090 ARFGAP3Q9NP61 516 aa11.21□□□□□ -0.62
SYNE1-230ENST00000495090 A0A087WWV3 80 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 BTBD11A6QL63 1104 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 URI1O94763 535 aaPredicted RBP11.2□□□□□ -0.62
SYNE1-230ENST00000495090 NLRP6P59044 892 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 AKAP4Q5JQC9 854 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 NEK11Q8NG66 645 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 SMARCE1Q969G3 411 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 CARD6Q9BX69 1037 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 COPRSQ9NQ92 184 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 PALLDQ8WX93 1383 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 TNRQ92752 1358 aa11.2□□□□□ -0.62
SYNE1-230ENST00000495090 A0A1B0GVL5 298 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 POLR3GO15318 223 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-230ENST00000495090 SASH3O75995 380 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 CMA1P23946 247 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 TEFQ10587 303 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 ZSCAN26Q16670 478 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 CWF19L2Q2TBE0 894 aaKnown RBP11.19□□□□□ -0.62
SYNE1-230ENST00000495090 KRBA2Q6ZNG9 492 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms