RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 ZNF804BA4D1E1 1349 aa13.44□□□□□ -0.26
NELFE-213ENST00000494956 PLIN1O60240 522 aa13.44□□□□□ -0.26
NELFE-213ENST00000494956 HSPA1AP0DMV8 641 aaKnown RBP13.44□□□□□ -0.26
NELFE-213ENST00000494956 HSPA1BP0DMV9 641 aaKnown RBP13.44□□□□□ -0.26
NELFE-213ENST00000494956 IFIT5Q13325 482 aaKnown RBP13.44□□□□□ -0.26
NELFE-213ENST00000494956 ZNF408Q9H9D4 720 aa13.44□□□□□ -0.26
NELFE-213ENST00000494956 PGAP2Q9UHJ9 254 aa13.44□□□□□ -0.26
NELFE-213ENST00000494956 USP17L3A6NCW0 530 aa13.43□□□□□ -0.26
NELFE-213ENST00000494956 USP17L4A6NCW7 530 aa13.43□□□□□ -0.26
NELFE-213ENST00000494956 KIF4BQ2VIQ3 1234 aa13.43□□□□□ -0.26
NELFE-213ENST00000494956 DIEXFQ68CQ4 756 aaKnown RBP13.43□□□□□ -0.26
NELFE-213ENST00000494956 RSBN1LQ6PCB5 846 aaPredicted RBP13.43□□□□□ -0.26
NELFE-213ENST00000494956 USP17L1Q7RTZ2 530 aa13.43□□□□□ -0.26
NELFE-213ENST00000494956 USP48Q86UV5 1035 aa13.43□□□□□ -0.26
NELFE-213ENST00000494956 PUS3Q9BZE2 481 aaKnown RBP13.43□□□□□ -0.26
NELFE-213ENST00000494956 SMC4Q9NTJ3 1288 aa13.43□□□□□ -0.26
NELFE-213ENST00000494956 SCAF8Q9UPN6 1271 aaKnown RBP13.43□□□□□ -0.26
NELFE-213ENST00000494956 ADM5C9JUS6 153 aa13.42□□□□□ -0.26
NELFE-213ENST00000494956 CELF2O95319 508 aaKnown RBP13.42□□□□□ -0.26
NELFE-213ENST00000494956 RPS12P25398 132 aaKnown RBP13.42□□□□□ -0.26
NELFE-213ENST00000494956 GRM1Q13255 1194 aa13.42□□□□□ -0.26
NELFE-213ENST00000494956 DEFB115Q30KQ5 88 aa13.42□□□□□ -0.26
NELFE-213ENST00000494956 PODNQ7Z5L7 613 aa13.42□□□□□ -0.26
NELFE-213ENST00000494956 GMLQ99445 158 aa13.42□□□□□ -0.26
NELFE-213ENST00000494956 ANKRD2Q9GZV1 360 aa13.42□□□□□ -0.26
NELFE-213ENST00000494956 BICC1Q9H694 974 aaKnown RBP13.42□□□□□ -0.26
NELFE-213ENST00000494956 LEMD3Q9Y2U8 911 aa13.42□□□□□ -0.26
NELFE-213ENST00000494956 UTYO14607 1347 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 PTPRCP08575 1304 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 IRS2Q9Y4H2 1338 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 RASSF10A6NK89 507 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 KCNJ4P48050 445 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 CCDC57Q2TAC2 916 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 TAF7LQ5H9L4 462 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 COL13A1Q5TAT6 717 aaPredicted RBP13.41□□□□□ -0.26
NELFE-213ENST00000494956 CYP4F22Q6NT55 531 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 LDHAL6AQ6ZMR3 332 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 PAXIP1Q6ZW49 1069 aaPredicted RBP13.41□□□□□ -0.26
NELFE-213ENST00000494956 ANKRD44Q8N8A2 993 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 ZC3H15Q8WU90 426 aaKnown RBP13.41□□□□□ -0.26
NELFE-213ENST00000494956 USP44Q9H0E7 712 aa13.41□□□□□ -0.26
NELFE-213ENST00000494956 ALDH1L2Q3SY69 923 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 DACT2Q5SW24 774 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 CDC37L1Q7L3B6 337 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 KRT26Q7Z3Y9 468 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 AGBL3Q8NEM8 1001 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 KLHDC4Q8TBB5 520 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 COA1Q9GZY4 146 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 CNNM1Q9NRU3 951 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 GGA3Q9NZ52 723 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 NOB1Q9ULX3 412 aaKnown RBP13.4□□□□□ -0.26
NELFE-213ENST00000494956 JAG2Q9Y219 1238 aa13.4□□□□□ -0.26
NELFE-213ENST00000494956 WDR33Q9C0J8 1336 aaKnown RBP13.39□□□□□ -0.27
NELFE-213ENST00000494956 USP17L8P0C7I0 530 aa13.39□□□□□ -0.27
NELFE-213ENST00000494956 ZNF280AP59817 542 aaPredicted RBP13.39□□□□□ -0.27
NELFE-213ENST00000494956 GTF2IP78347 998 aa13.39□□□□□ -0.27
NELFE-213ENST00000494956 SCARF1Q14162 830 aa13.39□□□□□ -0.27
NELFE-213ENST00000494956 LRRC24Q50LG9 513 aa13.39□□□□□ -0.27
NELFE-213ENST00000494956 ANGEL2Q5VTE6 544 aaKnown RBP13.39□□□□□ -0.27
NELFE-213ENST00000494956 TTLL5Q6EMB2 1281 aa13.39□□□□□ -0.27
NELFE-213ENST00000494956 CD209Q9NNX6 404 aa13.39□□□□□ -0.27
NELFE-213ENST00000494956 TNNQ9UQP3 1299 aa13.39□□□□□ -0.27
NELFE-213ENST00000494956 TLL2Q9Y6L7 1015 aa13.39□□□□□ -0.27
NELFE-213ENST00000494956 FOXN1O15353 648 aa13.38□□□□□ -0.27
NELFE-213ENST00000494956 AOC2O75106 756 aa13.38□□□□□ -0.27
NELFE-213ENST00000494956 RARSP54136 660 aaKnown RBP13.38□□□□□ -0.27
NELFE-213ENST00000494956 NBPF9Q3BBW0 867 aa13.38□□□□□ -0.27
NELFE-213ENST00000494956 DCPSQ96C86 337 aaKnown RBP13.38□□□□□ -0.27
NELFE-213ENST00000494956 CAPNS2Q96L46 248 aa13.38□□□□□ -0.27
NELFE-213ENST00000494956 MYOZ2Q9NPC6 264 aa13.38□□□□□ -0.27
NELFE-213ENST00000494956 ZNF609O15014 1411 aa13.38□□□□□ -0.27
NELFE-213ENST00000494956 RABL6Q3YEC7 729 aaPredicted RBP13.37□□□□□ -0.27
NELFE-213ENST00000494956 STRIP1Q5VSL9 837 aa13.37□□□□□ -0.27
NELFE-213ENST00000494956 PRAMEF18Q5VWM3 479 aa13.37□□□□□ -0.27
NELFE-213ENST00000494956 SAPCD2Q86UD0 394 aa13.37□□□□□ -0.27
NELFE-213ENST00000494956 KIAA0825Q8IV33 1275 aa13.37□□□□□ -0.27
NELFE-213ENST00000494956 CERS5Q8N5B7 392 aa13.37□□□□□ -0.27
NELFE-213ENST00000494956 PCDHAC2Q9Y5I4 1007 aa13.37□□□□□ -0.27
NELFE-213ENST00000494956 PCNTO95613 3336 aa13.36□□□□□ -0.27
NELFE-213ENST00000494956 SASH1O94885 1247 aa13.36□□□□□ -0.27
NELFE-213ENST00000494956 GYG1P46976 350 aa13.36□□□□□ -0.27
NELFE-213ENST00000494956 HNRNPUQ00839 825 aaKnown RBP eCLIP13.36□□□□□ -0.27
NELFE-213ENST00000494956 RIPOR2Q9Y4F9 1068 aa13.36□□□□□ -0.27
NELFE-213ENST00000494956 F8W031 263 aaPredicted RBP13.35□□□□□ -0.27
NELFE-213ENST00000494956 BCAR3O75815 825 aa13.35□□□□□ -0.27
NELFE-213ENST00000494956 C15orf52Q6ZUT6 534 aaKnown RBP13.35□□□□□ -0.27
NELFE-213ENST00000494956 ZIC5Q96T25 663 aa13.35□□□□□ -0.27
NELFE-213ENST00000494956 THSD7BQ9C0I4 1608 aa13.35□□□□□ -0.27
NELFE-213ENST00000494956 WNT10BO00744 389 aa13.34□□□□□ -0.27
NELFE-213ENST00000494956 CT47B1P0C2W7 299 aaPredicted RBP13.34□□□□□ -0.27
NELFE-213ENST00000494956 IL1R1P14778 569 aa13.34□□□□□ -0.27
NELFE-213ENST00000494956 RFX5P48382 616 aaPredicted RBP13.34□□□□□ -0.27
NELFE-213ENST00000494956 IFFO2Q5TF58 517 aa13.34□□□□□ -0.27
NELFE-213ENST00000494956 ZNF804AQ7Z570 1209 aa13.34□□□□□ -0.27
NELFE-213ENST00000494956 SULF1Q8IWU6 871 aa13.34□□□□□ -0.27
NELFE-213ENST00000494956 CDCA5Q96FF9 252 aa13.34□□□□□ -0.27
NELFE-213ENST00000494956 GBA2Q9HCG7 927 aaPredicted RBP13.34□□□□□ -0.27
NELFE-213ENST00000494956 WBP1LQ9NX94 342 aa13.34□□□□□ -0.27
NELFE-213ENST00000494956 IQSEC3Q9UPP2 1182 aaPredicted RBP13.34□□□□□ -0.27
NELFE-213ENST00000494956 AOX1Q06278 1338 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms