RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 FAM161AQ3B820 660 aa16.23■□□□□ 0.19
SKA1-205ENST00000494518 UBE3BQ7Z3V4 1068 aa16.23■□□□□ 0.19
SKA1-205ENST00000494518 TTLL11Q8NHH1 800 aa16.23■□□□□ 0.19
SKA1-205ENST00000494518 CDC5LQ99459 802 aaKnown RBP16.23■□□□□ 0.19
SKA1-205ENST00000494518 MCOLN1Q9GZU1 580 aa16.23■□□□□ 0.19
SKA1-205ENST00000494518 NEURL1BA8MQ27 555 aa16.22■□□□□ 0.19
SKA1-205ENST00000494518 ZNF280AP59817 542 aaPredicted RBP16.22■□□□□ 0.19
SKA1-205ENST00000494518 KIF23Q02241 960 aaPredicted RBP16.22■□□□□ 0.19
SKA1-205ENST00000494518 WWC1Q8IX03 1113 aa16.22■□□□□ 0.19
SKA1-205ENST00000494518 MINPP1Q9UNW1 487 aa16.22■□□□□ 0.19
SKA1-205ENST00000494518 SALL2Q9Y467 1007 aaPredicted RBP16.22■□□□□ 0.19
SKA1-205ENST00000494518 USP17L3A6NCW0 530 aa16.21■□□□□ 0.19
SKA1-205ENST00000494518 USP17L4A6NCW7 530 aa16.21■□□□□ 0.19
SKA1-205ENST00000494518 USP17L8P0C7I0 530 aa16.21■□□□□ 0.19
SKA1-205ENST00000494518 USP17L1Q7RTZ2 530 aa16.21■□□□□ 0.19
SKA1-205ENST00000494518 AGBL3Q8NEM8 1001 aa16.21■□□□□ 0.19
SKA1-205ENST00000494518 GMLQ99445 158 aa16.21■□□□□ 0.19
SKA1-205ENST00000494518 CHMP4AQ9BY43 222 aa16.21■□□□□ 0.19
SKA1-205ENST00000494518 MYOZ2Q9NPC6 264 aa16.21■□□□□ 0.19
SKA1-205ENST00000494518 A0A1B0GUL6 1792 aa16.21■□□□□ 0.18
SKA1-205ENST00000494518 ZNF609O15014 1411 aa16.2■□□□□ 0.18
SKA1-205ENST00000494518 KLRK1P26718 216 aa16.2■□□□□ 0.18
SKA1-205ENST00000494518 DSG3P32926 999 aa16.2■□□□□ 0.18
SKA1-205ENST00000494518 CCT4P50991 539 aaKnown RBP16.2■□□□□ 0.18
SKA1-205ENST00000494518 DGKZQ13574 1117 aa16.2■□□□□ 0.18
SKA1-205ENST00000494518 PRAMEF18Q5VWM3 479 aa16.2■□□□□ 0.18
SKA1-205ENST00000494518 BSDC1Q9NW68 430 aaPredicted RBP16.2■□□□□ 0.18
SKA1-205ENST00000494518 MED23Q9ULK4 1368 aa16.2■□□□□ 0.18
SKA1-205ENST00000494518 PAPPA2Q9BXP8 1791 aa16.2■□□□□ 0.18
SKA1-205ENST00000494518 MOB2Q70IA6 237 aa16.19■□□□□ 0.18
SKA1-205ENST00000494518 PODNQ7Z5L7 613 aa16.19■□□□□ 0.18
SKA1-205ENST00000494518 TXNRD3Q86VQ6 643 aa16.19■□□□□ 0.18
SKA1-205ENST00000494518 CCDC102AQ96A19 550 aa16.19■□□□□ 0.18
SKA1-205ENST00000494518 H7C1W4 665 aa16.18■□□□□ 0.18
SKA1-205ENST00000494518 TRPA1O75762 1119 aa16.18■□□□□ 0.18
SKA1-205ENST00000494518 SLC10A3P09131 477 aa16.18■□□□□ 0.18
SKA1-205ENST00000494518 IGHMBP2P38935 993 aaKnown RBP16.18■□□□□ 0.18
SKA1-205ENST00000494518 FLIIQ13045 1269 aa16.18■□□□□ 0.18
SKA1-205ENST00000494518 FKBP5Q13451 457 aaPredicted RBP16.18■□□□□ 0.18
SKA1-205ENST00000494518 CCDC27Q2M243 656 aa16.18■□□□□ 0.18
SKA1-205ENST00000494518 NBPF9Q3BBW0 867 aa16.18■□□□□ 0.18
SKA1-205ENST00000494518 FANCIQ9NVI1 1328 aa16.18■□□□□ 0.18
SKA1-205ENST00000494518 ZBTB22O15209 634 aa16.17■□□□□ 0.18
SKA1-205ENST00000494518 SASH1O94885 1247 aa16.17■□□□□ 0.18
SKA1-205ENST00000494518 ITGA6P23229 1130 aa16.17■□□□□ 0.18
SKA1-205ENST00000494518 GCKRQ14397 625 aa16.17■□□□□ 0.18
SKA1-205ENST00000494518 DACT2Q5SW24 774 aa16.17■□□□□ 0.18
SKA1-205ENST00000494518 RASAL3Q86YV0 1011 aa16.17■□□□□ 0.18
SKA1-205ENST00000494518 MRS2Q9HD23 443 aa16.17■□□□□ 0.18
SKA1-205ENST00000494518 RNF186Q9NXI6 227 aa16.17■□□□□ 0.18
SKA1-205ENST00000494518 DNAAF4Q8WXU2 420 aa16.16■□□□□ 0.18
SKA1-205ENST00000494518 PDE4DIPQ5VU43 2346 aa16.16■□□□□ 0.18
SKA1-205ENST00000494518 UBE2Q2LH0YL09 131 aa16.15■□□□□ 0.18
SKA1-205ENST00000494518 SNAP23O00161 211 aa16.15■□□□□ 0.18
SKA1-205ENST00000494518 CASP7P55210 303 aa16.15■□□□□ 0.18
SKA1-205ENST00000494518 TTLL12Q14166 644 aaPredicted RBP16.15■□□□□ 0.18
SKA1-205ENST00000494518 CSRNP1Q96S65 589 aa16.15■□□□□ 0.18
SKA1-205ENST00000494518 MPHOSPH8Q99549 860 aa16.15■□□□□ 0.18
SKA1-205ENST00000494518 ZNF804BA4D1E1 1349 aa16.15■□□□□ 0.18
SKA1-205ENST00000494518 IL16Q14005 1332 aa16.15■□□□□ 0.18
SKA1-205ENST00000494518 PITPNM2Q9BZ72 1349 aa16.15■□□□□ 0.18
SKA1-205ENST00000494518 F6X3S4 739 aa16.14■□□□□ 0.17
SKA1-205ENST00000494518 KCNJ4P48050 445 aa16.14■□□□□ 0.17
SKA1-205ENST00000494518 EXOSC9Q06265 439 aaKnown RBP16.14■□□□□ 0.17
SKA1-205ENST00000494518 KIAA0825Q8IV33 1275 aa16.14■□□□□ 0.17
SKA1-205ENST00000494518 PLA2G12BQ9BX93 195 aa16.14■□□□□ 0.17
SKA1-205ENST00000494518 COA1Q9GZY4 146 aa16.14■□□□□ 0.17
SKA1-205ENST00000494518 MYH16Q9H6N6 1097 aa16.14■□□□□ 0.17
SKA1-205ENST00000494518 LEMD3Q9Y2U8 911 aa16.14■□□□□ 0.17
SKA1-205ENST00000494518 CHMP3Q9Y3E7 222 aa16.14■□□□□ 0.17
SKA1-205ENST00000494518 ECM29Q5VYK3 1845 aa16.13■□□□□ 0.17
SKA1-205ENST00000494518 WNT10BO00744 389 aa16.13■□□□□ 0.17
SKA1-205ENST00000494518 GTF2IP78347 998 aa16.13■□□□□ 0.17
SKA1-205ENST00000494518 MLLT1Q03111 559 aaPredicted RBP16.13■□□□□ 0.17
SKA1-205ENST00000494518 CHRNDQ07001 517 aa16.13■□□□□ 0.17
SKA1-205ENST00000494518 MKRN3Q13064 507 aaKnown RBP16.13■□□□□ 0.17
SKA1-205ENST00000494518 PRKG1Q13976 671 aa16.13■□□□□ 0.17
SKA1-205ENST00000494518 STRIP1Q5VSL9 837 aa16.13■□□□□ 0.17
SKA1-205ENST00000494518 TTLL5Q6EMB2 1281 aa16.13■□□□□ 0.17
SKA1-205ENST00000494518 OGFOD1Q8N543 542 aa16.13■□□□□ 0.17
SKA1-205ENST00000494518 HELBQ8NG08 1087 aaPredicted RBP16.13■□□□□ 0.17
SKA1-205ENST00000494518 SAGE1Q9NXZ1 904 aa16.13■□□□□ 0.17
SKA1-205ENST00000494518 VAMP4O75379 141 aa16.12■□□□□ 0.17
SKA1-205ENST00000494518 TAF5LO75529 589 aa16.12■□□□□ 0.17
SKA1-205ENST00000494518 LINS1Q8NG48 757 aa16.12■□□□□ 0.17
SKA1-205ENST00000494518 ANKRD2Q9GZV1 360 aa16.12■□□□□ 0.17
SKA1-205ENST00000494518 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.12■□□□□ 0.17
SKA1-205ENST00000494518 TNRC18O15417 2968 aaPredicted RBP16.12■□□□□ 0.17
SKA1-205ENST00000494518 ANKRD18BA2A2Z9 1011 aa16.11■□□□□ 0.17
SKA1-205ENST00000494518 CSF1RP07333 972 aa16.11■□□□□ 0.17
SKA1-205ENST00000494518 FKBP1BP68106 108 aa16.11■□□□□ 0.17
SKA1-205ENST00000494518 JAG2Q9Y219 1238 aa16.11■□□□□ 0.17
SKA1-205ENST00000494518 MYO3BQ8WXR4 1341 aa16.11■□□□□ 0.17
SKA1-205ENST00000494518 FZD1Q9UP38 647 aa16.1■□□□□ 0.17
SKA1-205ENST00000494518 F8W031 263 aaPredicted RBP16.09■□□□□ 0.17
SKA1-205ENST00000494518 RGS19P49795 217 aa16.09■□□□□ 0.17
SKA1-205ENST00000494518 SOX10P56693 466 aa16.09■□□□□ 0.17
SKA1-205ENST00000494518 FOXO4P98177 505 aa16.09■□□□□ 0.17
SKA1-205ENST00000494518 EPHA10Q5JZY3 1008 aa16.09■□□□□ 0.17
SKA1-205ENST00000494518 ZNF594Q96JF6 807 aaPredicted RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms