RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 RTL9Q8NET4 1388 aa13.26□□□□□ -0.29
PDLIM1-205ENST00000493949 OTUD5Q96G74 571 aa13.26□□□□□ -0.29
PDLIM1-205ENST00000493949 PITPNM2Q9BZ72 1349 aa13.26□□□□□ -0.29
PDLIM1-205ENST00000493949 MIS18AQ9NYP9 233 aa13.26□□□□□ -0.29
PDLIM1-205ENST00000493949 PLIN1O60240 522 aa13.25□□□□□ -0.29
PDLIM1-205ENST00000493949 CT47B1P0C2W7 299 aaPredicted RBP13.25□□□□□ -0.29
PDLIM1-205ENST00000493949 SREBF2Q12772 1141 aa13.25□□□□□ -0.29
PDLIM1-205ENST00000493949 RBM26Q5T8P6 1007 aaKnown RBP13.25□□□□□ -0.29
PDLIM1-205ENST00000493949 OTOP1Q7RTM1 612 aa13.25□□□□□ -0.29
PDLIM1-205ENST00000493949 ARMC5Q96C12 935 aa13.25□□□□□ -0.29
PDLIM1-205ENST00000493949 RSPH6AQ9H0K4 717 aa13.25□□□□□ -0.29
PDLIM1-205ENST00000493949 R3HDMLQ9H3Y0 253 aa13.25□□□□□ -0.29
PDLIM1-205ENST00000493949 ASTN2O75129 1339 aaPredicted RBP13.24□□□□□ -0.29
PDLIM1-205ENST00000493949 VIL1P09327 827 aaKnown RBP13.24□□□□□ -0.29
PDLIM1-205ENST00000493949 GRAPQ13588 217 aa13.24□□□□□ -0.29
PDLIM1-205ENST00000493949 WASHC4Q2M389 1173 aa13.24□□□□□ -0.29
PDLIM1-205ENST00000493949 GRAPLQ8TC17 118 aaPredicted RBP13.24□□□□□ -0.29
PDLIM1-205ENST00000493949 NECTIN2Q92692 538 aa13.24□□□□□ -0.29
PDLIM1-205ENST00000493949 ZBTB3Q9H5J0 574 aa13.24□□□□□ -0.29
PDLIM1-205ENST00000493949 UPF2Q9HAU5 1272 aaKnown RBP13.24□□□□□ -0.29
PDLIM1-205ENST00000493949 EN2P19622 333 aaPredicted RBP13.23□□□□□ -0.29
PDLIM1-205ENST00000493949 ZNF280AP59817 542 aaPredicted RBP13.23□□□□□ -0.29
PDLIM1-205ENST00000493949 CCDC27Q2M243 656 aa13.23□□□□□ -0.29
PDLIM1-205ENST00000493949 ANGEL2Q5VTE6 544 aaKnown RBP13.23□□□□□ -0.29
PDLIM1-205ENST00000493949 DCBLD2Q96PD2 775 aa13.23□□□□□ -0.29
PDLIM1-205ENST00000493949 UTP14AQ9BVJ6 771 aaKnown RBP13.23□□□□□ -0.29
PDLIM1-205ENST00000493949 DBNDD1Q9H9R9 158 aa13.23□□□□□ -0.29
PDLIM1-205ENST00000493949 ISY1Q9ULR0 285 aaKnown RBP13.23□□□□□ -0.29
PDLIM1-205ENST00000493949 TRIM17Q9Y577 477 aa13.23□□□□□ -0.29
PDLIM1-205ENST00000493949 ALDH1A1P00352 501 aa13.22□□□□□ -0.29
PDLIM1-205ENST00000493949 MOB2Q70IA6 237 aa13.22□□□□□ -0.29
PDLIM1-205ENST00000493949 DDX46Q7L014 1031 aaKnown RBP13.22□□□□□ -0.29
PDLIM1-205ENST00000493949 CLUAP1Q96AJ1 413 aa13.22□□□□□ -0.29
PDLIM1-205ENST00000493949 KCNQ5Q9NR82 932 aa13.22□□□□□ -0.29
PDLIM1-205ENST00000493949 PTPN22Q9Y2R2 807 aa13.22□□□□□ -0.29
PDLIM1-205ENST00000493949 SALL2Q9Y467 1007 aaPredicted RBP13.22□□□□□ -0.29
PDLIM1-205ENST00000493949 UBE2Q2LH0YL09 131 aa13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 HTATSF1O43719 755 aaKnown RBP13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 ECE2O60344 883 aa13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 SCARF1Q14162 830 aa13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 TAF7Q15545 349 aaPredicted RBP13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 C20orf194Q5TEA3 1177 aa13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 WDR63Q8IWG1 891 aa13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 IL27Q8NEV9 243 aa13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 RTF1Q92541 710 aaKnown RBP13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 RRP7AQ9Y3A4 280 aaKnown RBP13.21□□□□□ -0.29
PDLIM1-205ENST00000493949 ERBB4Q15303 1308 aa13.2□□□□□ -0.3
PDLIM1-205ENST00000493949 H0YGN5 161 aa13.19□□□□□ -0.3
PDLIM1-205ENST00000493949 MYL6BP14649 208 aa13.19□□□□□ -0.3
PDLIM1-205ENST00000493949 MNX1P50219 401 aaPredicted RBP13.19□□□□□ -0.3
PDLIM1-205ENST00000493949 LRP10Q7Z4F1 713 aa13.19□□□□□ -0.3
PDLIM1-205ENST00000493949 AGBL3Q8NEM8 1001 aa13.19□□□□□ -0.3
PDLIM1-205ENST00000493949 FRAT1Q92837 279 aaPredicted RBP13.19□□□□□ -0.3
PDLIM1-205ENST00000493949 EYA3Q99504 573 aa13.19□□□□□ -0.3
PDLIM1-205ENST00000493949 POLLQ9UGP5 575 aa13.19□□□□□ -0.3
PDLIM1-205ENST00000493949 HCLS1P14317 486 aaPredicted RBP13.18□□□□□ -0.3
PDLIM1-205ENST00000493949 INHBEP58166 350 aa13.18□□□□□ -0.3
PDLIM1-205ENST00000493949 ZNF428Q96B54 188 aa13.18□□□□□ -0.3
PDLIM1-205ENST00000493949 ERO1AQ96HE7 468 aa13.18□□□□□ -0.3
PDLIM1-205ENST00000493949 GMLQ99445 158 aa13.18□□□□□ -0.3
PDLIM1-205ENST00000493949 NSFL1CQ9UNZ2 370 aaKnown RBP13.18□□□□□ -0.3
PDLIM1-205ENST00000493949 COL4A1P02462 1669 aa13.18□□□□□ -0.3
PDLIM1-205ENST00000493949 RIMBP2O15034 1052 aa13.17□□□□□ -0.3
PDLIM1-205ENST00000493949 EIF5BO60841 1220 aaKnown RBP13.17□□□□□ -0.3
PDLIM1-205ENST00000493949 SPRYD7Q5W111 196 aa13.17□□□□□ -0.3
PDLIM1-205ENST00000493949 ZNF333Q96JL9 665 aa13.17□□□□□ -0.3
PDLIM1-205ENST00000493949 MYOZ2Q9NPC6 264 aa13.17□□□□□ -0.3
PDLIM1-205ENST00000493949 ZNF646O15015 1829 aaPredicted RBP13.17□□□□□ -0.3
PDLIM1-205ENST00000493949 C6orf229H3BNL8 230 aa13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 PTMSP20962 102 aa13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 DOK7Q18PE1 504 aa13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 LDLRAD1Q5T700 205 aa13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 RSBN1LQ6PCB5 846 aaPredicted RBP13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 NLRP10Q86W26 655 aa13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 IFNL1Q8IU54 200 aa13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 THUMPD2Q9BTF0 503 aaKnown RBP13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 TMEM106CQ9BVX2 250 aa13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 PRO3102Q9H379 93 aa13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 RBM27Q9P2N5 1060 aaKnown RBP13.16□□□□□ -0.3
PDLIM1-205ENST00000493949 SH3TC1Q8TE82 1336 aa13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 UNC80Q8N2C7 3258 aa13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 MANSC4A6NHS7 340 aaPredicted RBP13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 U2AF1L5P0DN76 240 aaPredicted RBP13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 NF2P35240 595 aa13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 EIF4A1P60842 406 aaKnown RBP13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 GPSM2P81274 684 aa13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 U2AF1Q01081 240 aaKnown RBP eCLIP13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 PTPN12Q05209 780 aaKnown RBP13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 MKRN3Q13064 507 aaKnown RBP13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 TCIRG1Q13488 830 aa13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 TBC1D16Q8TBP0 767 aa13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 RUNDC1Q96C34 613 aa13.15□□□□□ -0.3
PDLIM1-205ENST00000493949 LAMA3Q16787 3333 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 APAF1O14727 1248 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 ANXA1P04083 346 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 USP17L8P0C7I0 530 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 SF3B3Q15393 1217 aaKnown RBP13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 HSP90AB3PQ58FF7 597 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 PRAMEF18Q5VWM3 479 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 ZNF579Q8NAF0 562 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 142.7 ms