RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	BRMS1	Q9HCU9	246 aa		13.92	□□□□□ -0.18
BRCA1-222	ENST00000493919	NPR1	P16066	1061 aa		13.91	□□□□□ -0.18
BRCA1-222	ENST00000493919	MFAP1	P55081	439 aa	Known RBP	13.91	□□□□□ -0.18
BRCA1-222	ENST00000493919	TTLL6	Q8N841	843 aa		13.91	□□□□□ -0.18
BRCA1-222	ENST00000493919	MNS1	Q8NEH6	495 aa		13.91	□□□□□ -0.18
BRCA1-222	ENST00000493919	CLUAP1	Q96AJ1	413 aa		13.91	□□□□□ -0.18
BRCA1-222	ENST00000493919	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.91	□□□□□ -0.18
BRCA1-222	ENST00000493919	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.91	□□□□□ -0.18
BRCA1-222	ENST00000493919	RCAN3	Q9UKA8	241 aa		13.91	□□□□□ -0.18
BRCA1-222	ENST00000493919	IPO8	O15397	1037 aa	Known RBP	13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	TRIM27	P14373	513 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	CRY2	Q49AN0	593 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	SLC10A5	Q5PT55	438 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	ATF7IP	Q6VMQ6	1270 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	DONSON	Q9NYP3	566 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	TNN	Q9UQP3	1299 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	KLRG2	A4D1S0	409 aa	Predicted RBP	13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	ALDH1L1	O75891	902 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	ZKSCAN2	Q63HK3	967 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	STYK1	Q6J9G0	422 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	PRPF40B	Q6NWY9	871 aa	Known RBP	13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	EP400NL	Q6ZTU2	488 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	ISY1	Q9ULR0	285 aa	Known RBP	13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	ARFGEF1	Q9Y6D6	1849 aa		13.9	□□□□□ -0.18
BRCA1-222	ENST00000493919	CDHR2	Q9BYE9	1310 aa		13.89	□□□□□ -0.19
BRCA1-222	ENST00000493919	MYH3	P11055	1940 aa		13.89	□□□□□ -0.19
BRCA1-222	ENST00000493919	GRM8	O00222	908 aa		13.89	□□□□□ -0.19
BRCA1-222	ENST00000493919	CNKSR1	Q969H4	720 aa		13.89	□□□□□ -0.19
BRCA1-222	ENST00000493919	SLX4	Q8IY92	1834 aa		13.89	□□□□□ -0.19
BRCA1-222	ENST00000493919	TRIM6-TRIM34	B2RNG4	842 aa		13.88	□□□□□ -0.19
BRCA1-222	ENST00000493919	ARHGAP45	Q92619	1136 aa		13.88	□□□□□ -0.19
BRCA1-222	ENST00000493919	RBM17	Q96I25	401 aa	Known RBP	13.88	□□□□□ -0.19
BRCA1-222	ENST00000493919	TRIM34	Q9BYJ4	488 aa		13.88	□□□□□ -0.19
BRCA1-222	ENST00000493919		H7C1W4	665 aa		13.88	□□□□□ -0.19
BRCA1-222	ENST00000493919	KIF3C	O14782	793 aa		13.88	□□□□□ -0.19
BRCA1-222	ENST00000493919	PDE8A	O60658	829 aa		13.88	□□□□□ -0.19
BRCA1-222	ENST00000493919	CCT4	P50991	539 aa	Known RBP	13.88	□□□□□ -0.19
BRCA1-222	ENST00000493919	ABCC4	O15439	1325 aa		13.88	□□□□□ -0.19
BRCA1-222	ENST00000493919	TAF1	P21675	1872 aa		13.87	□□□□□ -0.19
BRCA1-222	ENST00000493919	C21orf2	O43822	256 aa		13.87	□□□□□ -0.19
BRCA1-222	ENST00000493919	ALDH1B1	P30837	517 aa		13.87	□□□□□ -0.19
BRCA1-222	ENST00000493919	CTSW	P56202	376 aa		13.87	□□□□□ -0.19
BRCA1-222	ENST00000493919	DDX46	Q7L014	1031 aa	Known RBP	13.87	□□□□□ -0.19
BRCA1-222	ENST00000493919	BORCS6	Q96GS4	357 aa		13.87	□□□□□ -0.19
BRCA1-222	ENST00000493919	GRIN3B	O60391	1043 aa		13.86	□□□□□ -0.19
BRCA1-222	ENST00000493919	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.86	□□□□□ -0.19
BRCA1-222	ENST00000493919	CCDC152	Q4G0S7	254 aa		13.86	□□□□□ -0.19
BRCA1-222	ENST00000493919	CASP7	P55210	303 aa		13.86	□□□□□ -0.19
BRCA1-222	ENST00000493919	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.86	□□□□□ -0.19
BRCA1-222	ENST00000493919	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.86	□□□□□ -0.19
BRCA1-222	ENST00000493919	CHMP3	Q9Y3E7	222 aa		13.86	□□□□□ -0.19
BRCA1-222	ENST00000493919	COL4A1	P02462	1669 aa		13.85	□□□□□ -0.19
BRCA1-222	ENST00000493919	FSD2	A1L4K1	749 aa		13.85	□□□□□ -0.19
BRCA1-222	ENST00000493919	PPEF1	O14829	653 aa	Predicted RBP	13.85	□□□□□ -0.19
BRCA1-222	ENST00000493919	PLIN1	O60240	522 aa		13.85	□□□□□ -0.19
BRCA1-222	ENST00000493919	HOXA10	P31260	410 aa	Predicted RBP	13.85	□□□□□ -0.19
BRCA1-222	ENST00000493919	SF3B3	Q15393	1217 aa	Known RBP	13.85	□□□□□ -0.19
BRCA1-222	ENST00000493919	OLFM4	Q6UX06	510 aa		13.85	□□□□□ -0.19
BRCA1-222	ENST00000493919	ARHGAP27	Q6ZUM4	889 aa		13.85	□□□□□ -0.19
BRCA1-222	ENST00000493919	CRAMP1	Q96RY5	1269 aa		13.85	□□□□□ -0.19
BRCA1-222	ENST00000493919	SPEF2	Q9C093	1822 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	GRAP	Q13588	217 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	SLC51A	Q86UW1	340 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	DZIP1L	Q8IYY4	767 aa	Known RBP	13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	TMEM57	Q8N5G2	664 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	GRAPL	Q8TC17	118 aa	Predicted RBP	13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	SUCLG2	Q96I99	432 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	SEC31B	Q9NQW1	1179 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	CALCOCO1	Q9P1Z2	691 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	MPHOSPH10	O00566	681 aa	Known RBP	13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	FAM161A	Q3B820	660 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	ITPRIP	Q8IWB1	547 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	CELF1	Q92879	486 aa	Known RBP	13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	GREM2	Q9H772	168 aa		13.84	□□□□□ -0.19
BRCA1-222	ENST00000493919	UBTFL1	P0CB47	393 aa	Predicted RBP	13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	SCP2	P22307	547 aa		13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	GTF2A1	P52655	376 aa	Predicted RBP	13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	ZRSR2	Q15696	482 aa	Known RBP	13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	UVSSA	Q2YD98	709 aa		13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	INTS3	Q68E01	1043 aa	Known RBP	13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	TTLL11	Q8NHH1	800 aa		13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	PANK1	Q8TE04	598 aa		13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	MEIS3	Q99687	375 aa		13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	PLA2G12B	Q9BX93	195 aa		13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	USP44	Q9H0E7	712 aa		13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	MED4	Q9NPJ6	270 aa		13.83	□□□□□ -0.2
BRCA1-222	ENST00000493919	KLHL33	A6NCF5	533 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	NEFH	P12036	1026 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	RLBP1	P12271	317 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	TDO2	P48775	406 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	RASSF7	Q02833	373 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	CCDC93	Q567U6	631 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	EPHA10	Q5JZY3	1008 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	NME8	Q8N427	588 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	TMX4	Q9H1E5	349 aa	Predicted RBP	13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	UTY	O14607	1347 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	XRCC6	P12956	609 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	LMBR1L	Q6UX01	489 aa		13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.82	□□□□□ -0.2

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