RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 CRKP46108 304 aa6.59□□□□□ -1.36
VPS13A-212ENST00000493341 CAMK2GQ13555 558 aaPredicted RBP6.59□□□□□ -1.36
VPS13A-212ENST00000493341 RASA3Q14644 834 aa6.59□□□□□ -1.36
VPS13A-212ENST00000493341 WDR44Q5JSH3 913 aa6.59□□□□□ -1.36
VPS13A-212ENST00000493341 PCNX4Q63HM2 1172 aa6.59□□□□□ -1.36
VPS13A-212ENST00000493341 PRPF40BQ6NWY9 871 aaKnown RBP6.59□□□□□ -1.36
VPS13A-212ENST00000493341 RNF217Q8TC41 542 aa6.59□□□□□ -1.36
VPS13A-212ENST00000493341 NKD1Q969G9 470 aa6.59□□□□□ -1.36
VPS13A-212ENST00000493341 PPT2Q9UMR5 302 aa6.59□□□□□ -1.36
VPS13A-212ENST00000493341 NCAPG2Q86XI2 1143 aa6.58□□□□□ -1.36
VPS13A-212ENST00000493341 SH3TC2Q8TF17 1288 aa6.58□□□□□ -1.36
VPS13A-212ENST00000493341 RUBCNLQ9H714 662 aa6.58□□□□□ -1.36
VPS13A-212ENST00000493341 SPC25Q9HBM1 224 aa6.58□□□□□ -1.36
VPS13A-212ENST00000493341 ARID4BQ4LE39 1312 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-212ENST00000493341 TNFRSF10AO00220 468 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 SMAD7O15105 426 aaKnown RBP6.57□□□□□ -1.36
VPS13A-212ENST00000493341 MMP20O60882 483 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 SEZ6Q53EL9 994 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 C6orf118Q5T5N4 469 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 FBXW10Q5XX13 1052 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 ANKRD24Q8TF21 1146 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 KCNQ5Q9NR82 932 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 FANCLQ9NW38 375 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 DNAJC6O75061 913 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 CDC45O75419 566 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 TRPA1O75762 1119 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 GARTP22102 1010 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 MCM4P33991 863 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 TTBK2Q6IQ55 1244 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 OR13H1Q8NG92 308 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 HPS1Q92902 700 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 TCF12Q99081 682 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 DNAJC7Q99615 494 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 OSMRQ99650 979 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 ZKSCAN3Q9BRR0 538 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 CEP44Q9C0F1 390 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 SLKQ9H2G2 1235 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-212ENST00000493341 KANSL2Q9H9L4 492 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 METTL14Q9HCE5 456 aaKnown RBP6.57□□□□□ -1.36
VPS13A-212ENST00000493341 PCDH12Q9NPG4 1184 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 C11orf16Q9NQ32 467 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 ST7Q9NRC1 585 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 KLHL42Q9P2K6 505 aa6.57□□□□□ -1.36
VPS13A-212ENST00000493341 PPP1R12AO14974 1030 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-212ENST00000493341 TLR3O15455 904 aaKnown RBP6.56□□□□□ -1.36
VPS13A-212ENST00000493341 RARAP10276 462 aa6.56□□□□□ -1.36
VPS13A-212ENST00000493341 SMPD1P17405 629 aa6.56□□□□□ -1.36
VPS13A-212ENST00000493341 LMNB2Q03252 620 aa6.56□□□□□ -1.36
VPS13A-212ENST00000493341 PGBD3Q8N328 593 aa6.56□□□□□ -1.36
VPS13A-212ENST00000493341 CELF2-AS1Q8N7Q2 184 aa6.56□□□□□ -1.36
VPS13A-212ENST00000493341 SHDQ96IW2 340 aa6.56□□□□□ -1.36
VPS13A-212ENST00000493341 ENC1O14682 589 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 ACPPP15309 386 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 TFE3P19532 575 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-212ENST00000493341 LMNB1P20700 586 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 GRIA4P48058 902 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 CCINQ13939 588 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 PLEKHG4Q58EX7 1191 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 TNNI3KQ59H18 835 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 FAM196AQ6ZSG2 479 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 CCNJLQ8IV13 435 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 KCNH4Q9UQ05 1017 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 METTL12A8MUP2 240 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 CAPN5O15484 640 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-212ENST00000493341 GRIN2CQ14957 1233 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 LILRB2Q8N423 598 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 FAM169BQ8N8A8 192 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 PNMA5Q96PV4 448 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 CRBNQ96SW2 442 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 GSX2Q9BZM3 304 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 BRINP2Q9C0B6 783 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 ZFYVE1Q9HBF4 777 aa6.55□□□□□ -1.36
VPS13A-212ENST00000493341 FIGNL2A6NMB9 653 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 TRIM37O94972 964 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 EIF6P56537 245 aaKnown RBP6.54□□□□□ -1.36
VPS13A-212ENST00000493341 BNC2Q6ZN30 1099 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-212ENST00000493341 AGMOQ6ZNB7 445 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 LRP10Q7Z4F1 713 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 SLITRK4Q8IW52 837 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 FBXO27Q8NI29 283 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 APPBP2Q92624 585 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 JARID2Q92833 1246 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-212ENST00000493341 FERD3LQ96RJ6 166 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 GAS2L1Q99501 681 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-212ENST00000493341 CRISPLD1Q9H336 500 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 PAGE1O75459 146 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 SFSWAPQ12872 951 aaKnown RBP6.54□□□□□ -1.36
VPS13A-212ENST00000493341 IFRD2Q12894 506 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-212ENST00000493341 SPRED3Q2MJR0 410 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 TRIM42Q8IWZ5 723 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 CNTNAP3BQ96NU0 1288 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 NECAB3Q96P71 396 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-212ENST00000493341 CNTNAP3Q9BZ76 1288 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 TOR4AQ9NXH8 423 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 ZFATQ9P243 1243 aa6.54□□□□□ -1.36
VPS13A-212ENST00000493341 GPN3Q9UHW5 284 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-212ENST00000493341 ESYT3A0FGR9 886 aa6.53□□□□□ -1.36
VPS13A-212ENST00000493341 TTLL8A6PVC2 850 aa6.53□□□□□ -1.36
VPS13A-212ENST00000493341 F13A1P00488 732 aa6.53□□□□□ -1.36
VPS13A-212ENST00000493341 PSAPP07602 524 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms