RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 SLC10A3P09131 477 aa11.67□□□□□ -0.54
HDAC3-212ENST00000492407 ZNF157P51786 506 aaPredicted RBP11.67□□□□□ -0.54
HDAC3-212ENST00000492407 OGFOD1Q8N543 542 aa11.67□□□□□ -0.54
HDAC3-212ENST00000492407 LINS1Q8NG48 757 aa11.67□□□□□ -0.54
HDAC3-212ENST00000492407 TSR2Q969E8 191 aaKnown RBP11.67□□□□□ -0.54
HDAC3-212ENST00000492407 CDCA5Q96FF9 252 aa11.67□□□□□ -0.54
HDAC3-212ENST00000492407 GREM2Q9H772 168 aa11.67□□□□□ -0.54
HDAC3-212ENST00000492407 COL4A1P02462 1669 aa11.67□□□□□ -0.54
HDAC3-212ENST00000492407 KIF23Q02241 960 aaPredicted RBP11.66□□□□□ -0.54
HDAC3-212ENST00000492407 FLIIQ13045 1269 aa11.66□□□□□ -0.54
HDAC3-212ENST00000492407 DACT2Q5SW24 774 aa11.66□□□□□ -0.54
HDAC3-212ENST00000492407 ANGEL2Q5VTE6 544 aaKnown RBP11.66□□□□□ -0.54
HDAC3-212ENST00000492407 JARID2Q92833 1246 aaPredicted RBP11.66□□□□□ -0.54
HDAC3-212ENST00000492407 CCDC85AQ96PX6 553 aaPredicted RBP11.66□□□□□ -0.54
HDAC3-212ENST00000492407 CASP7P55210 303 aa11.65□□□□□ -0.54
HDAC3-212ENST00000492407 CWF19L2Q2TBE0 894 aaKnown RBP11.65□□□□□ -0.54
HDAC3-212ENST00000492407 C15orf52Q6ZUT6 534 aaKnown RBP11.65□□□□□ -0.54
HDAC3-212ENST00000492407 UBE3BQ7Z3V4 1068 aa11.65□□□□□ -0.54
HDAC3-212ENST00000492407 DNAAF4Q8WXU2 420 aa11.65□□□□□ -0.54
HDAC3-212ENST00000492407 MPHOSPH8Q99549 860 aa11.65□□□□□ -0.54
HDAC3-212ENST00000492407 MCOLN1Q9GZU1 580 aa11.65□□□□□ -0.54
HDAC3-212ENST00000492407 ZNF804BA4D1E1 1349 aa11.64□□□□□ -0.55
HDAC3-212ENST00000492407 VAMP4O75379 141 aa11.64□□□□□ -0.55
HDAC3-212ENST00000492407 ITGA6P23229 1130 aa11.64□□□□□ -0.55
HDAC3-212ENST00000492407 FKBP5Q13451 457 aaPredicted RBP11.64□□□□□ -0.55
HDAC3-212ENST00000492407 DLK2Q6UY11 383 aa11.64□□□□□ -0.55
HDAC3-212ENST00000492407 G2E3Q7L622 706 aa11.64□□□□□ -0.55
HDAC3-212ENST00000492407 CSRNP1Q96S65 589 aa11.64□□□□□ -0.55
HDAC3-212ENST00000492407 ZIC5Q96T25 663 aa11.64□□□□□ -0.55
HDAC3-212ENST00000492407 RNF186Q9NXI6 227 aa11.64□□□□□ -0.55
HDAC3-212ENST00000492407 ASTN2O75129 1339 aaPredicted RBP11.63□□□□□ -0.55
HDAC3-212ENST00000492407 CCDC85CA6NKD9 419 aa11.63□□□□□ -0.55
HDAC3-212ENST00000492407 NF2P35240 595 aa11.63□□□□□ -0.55
HDAC3-212ENST00000492407 ZEB1P37275 1124 aaPredicted RBP11.63□□□□□ -0.55
HDAC3-212ENST00000492407 CCDC184Q52MB2 194 aa11.63□□□□□ -0.55
HDAC3-212ENST00000492407 TTLL5Q6EMB2 1281 aa11.63□□□□□ -0.55
HDAC3-212ENST00000492407 TSKSQ9UJT2 592 aa11.63□□□□□ -0.55
HDAC3-212ENST00000492407 HDAC9Q9UKV0 1011 aa11.63□□□□□ -0.55
HDAC3-212ENST00000492407 FANCIQ9NVI1 1328 aa11.62□□□□□ -0.55
HDAC3-212ENST00000492407 SCN9AQ15858 1988 aa11.62□□□□□ -0.55
HDAC3-212ENST00000492407 ANKRD18BA2A2Z9 1011 aa11.62□□□□□ -0.55
HDAC3-212ENST00000492407 UNCXA6NJT0 531 aa11.62□□□□□ -0.55
HDAC3-212ENST00000492407 WNT10BO00744 389 aa11.62□□□□□ -0.55
HDAC3-212ENST00000492407 FKBP1AP62942 108 aaKnown RBP11.62□□□□□ -0.55
HDAC3-212ENST00000492407 MLLT1Q03111 559 aaPredicted RBP11.62□□□□□ -0.55
HDAC3-212ENST00000492407 DGKZQ13574 1117 aa11.62□□□□□ -0.55
HDAC3-212ENST00000492407 NOM1Q5C9Z4 860 aaKnown RBP11.62□□□□□ -0.55
HDAC3-212ENST00000492407 MRS2Q9HD23 443 aa11.62□□□□□ -0.55
HDAC3-212ENST00000492407 ANP32CO43423 234 aa11.61□□□□□ -0.55
HDAC3-212ENST00000492407 TRPA1O75762 1119 aa11.61□□□□□ -0.55
HDAC3-212ENST00000492407 CHRNDQ07001 517 aa11.61□□□□□ -0.55
HDAC3-212ENST00000492407 IFIT5Q13325 482 aaKnown RBP11.61□□□□□ -0.55
HDAC3-212ENST00000492407 NBPF9Q3BBW0 867 aa11.61□□□□□ -0.55
HDAC3-212ENST00000492407 BEND3Q5T5X7 828 aa11.61□□□□□ -0.55
HDAC3-212ENST00000492407 TXNRD3Q86VQ6 643 aa11.61□□□□□ -0.55
HDAC3-212ENST00000492407 RASAL3Q86YV0 1011 aa11.61□□□□□ -0.55
HDAC3-212ENST00000492407 APOBEC3FQ8IUX4 373 aaKnown RBP11.61□□□□□ -0.55
HDAC3-212ENST00000492407 MTMR14Q8NCE2 650 aa11.61□□□□□ -0.55
HDAC3-212ENST00000492407 ZBED3Q96IU2 234 aaPredicted RBP11.61□□□□□ -0.55
HDAC3-212ENST00000492407 CD209Q9NNX6 404 aa11.61□□□□□ -0.55
HDAC3-212ENST00000492407 PSME4Q14997 1843 aa11.6□□□□□ -0.55
HDAC3-212ENST00000492407 PAPPA2Q9BXP8 1791 aa11.6□□□□□ -0.55
HDAC3-212ENST00000492407 COL1A1P02452 1464 aaPredicted RBP11.6□□□□□ -0.55
HDAC3-212ENST00000492407 WTIPA6NIX2 430 aaPredicted RBP11.6□□□□□ -0.55
HDAC3-212ENST00000492407 KCNJ4P48050 445 aa11.6□□□□□ -0.55
HDAC3-212ENST00000492407 TM4SF4P48230 202 aa11.6□□□□□ -0.55
HDAC3-212ENST00000492407 FOXO4P98177 505 aa11.6□□□□□ -0.55
HDAC3-212ENST00000492407 PKN2Q16513 984 aaKnown RBP11.6□□□□□ -0.55
HDAC3-212ENST00000492407 FAM161AQ3B820 660 aa11.6□□□□□ -0.55
HDAC3-212ENST00000492407 CFHR5Q9BXR6 569 aa11.6□□□□□ -0.55
HDAC3-212ENST00000492407 PPP2R3BQ9Y5P8 575 aa11.6□□□□□ -0.55
HDAC3-212ENST00000492407 IRS2Q9Y4H2 1338 aa11.6□□□□□ -0.55
HDAC3-212ENST00000492407 ALDH1L1O75891 902 aa11.59□□□□□ -0.55
HDAC3-212ENST00000492407 IL1R1P14778 569 aa11.59□□□□□ -0.55
HDAC3-212ENST00000492407 EXOSC9Q06265 439 aaKnown RBP11.59□□□□□ -0.55
HDAC3-212ENST00000492407 ARMC9Q7Z3E5 817 aa11.59□□□□□ -0.55
HDAC3-212ENST00000492407 CTU1Q7Z7A3 348 aaKnown RBP11.59□□□□□ -0.55
HDAC3-212ENST00000492407 UBE2Q2Q8WVN8 375 aa11.59□□□□□ -0.55
HDAC3-212ENST00000492407 INHBEP58166 350 aa11.58□□□□□ -0.56
HDAC3-212ENST00000492407 GTF2IP78347 998 aa11.58□□□□□ -0.56
HDAC3-212ENST00000492407 SREBF2Q12772 1141 aa11.58□□□□□ -0.56
HDAC3-212ENST00000492407 DLGAP5Q15398 846 aa11.58□□□□□ -0.56
HDAC3-212ENST00000492407 MAP3K11Q16584 847 aa11.58□□□□□ -0.56
HDAC3-212ENST00000492407 CCDC57Q2TAC2 916 aa11.58□□□□□ -0.56
HDAC3-212ENST00000492407 LDLRAD1Q5T700 205 aa11.58□□□□□ -0.56
HDAC3-212ENST00000492407 ZNF804AQ7Z570 1209 aa11.58□□□□□ -0.56
HDAC3-212ENST00000492407 FBXW7Q969H0 707 aa11.58□□□□□ -0.56
HDAC3-212ENST00000492407 UBE2Q2LH0YL09 131 aa11.57□□□□□ -0.56
HDAC3-212ENST00000492407 GRM8O00222 908 aa11.57□□□□□ -0.56
HDAC3-212ENST00000492407 MYO1BO43795 1136 aa11.57□□□□□ -0.56
HDAC3-212ENST00000492407 SASH1O94885 1247 aa11.57□□□□□ -0.56
HDAC3-212ENST00000492407 ALDH1A1P00352 501 aa11.57□□□□□ -0.56
HDAC3-212ENST00000492407 KIAA0825Q8IV33 1275 aa11.57□□□□□ -0.56
HDAC3-212ENST00000492407 MXD3Q9BW11 206 aa11.57□□□□□ -0.56
HDAC3-212ENST00000492407 MYH3P11055 1940 aa11.56□□□□□ -0.56
HDAC3-212ENST00000492407 ZNF316A6NFI3 1004 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-212ENST00000492407 CENPBP07199 599 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-212ENST00000492407 KLRK1P26718 216 aa11.56□□□□□ -0.56
HDAC3-212ENST00000492407 UBE4AQ14139 1066 aa11.56□□□□□ -0.56
HDAC3-212ENST00000492407 TTLL12Q14166 644 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms