RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 SAMD7Q7Z3H4 446 aa31.04■■■□□ 2.56
UPF3A-209ENST00000492270 KLRG1Q96E93 195 aa31.04■■■□□ 2.56
UPF3A-209ENST00000492270 FMR1Q06787 632 aaKnown RBP eCLIP31.03■■■□□ 2.56
UPF3A-209ENST00000492270 TNNQ9UQP3 1299 aa31.03■■■□□ 2.56
UPF3A-209ENST00000492270 ZNF609O15014 1411 aa31.03■■■□□ 2.56
UPF3A-209ENST00000492270 PLIN1O60240 522 aa31.02■■■□□ 2.56
UPF3A-209ENST00000492270 TBC1D10BQ4KMP7 808 aaPredicted RBP31.02■■■□□ 2.56
UPF3A-209ENST00000492270 RSBN1LQ6PCB5 846 aaPredicted RBP31.02■■■□□ 2.56
UPF3A-209ENST00000492270 COA1Q9GZY4 146 aa31.02■■■□□ 2.56
UPF3A-209ENST00000492270 CREBZFQ9NS37 354 aa31.02■■■□□ 2.56
UPF3A-209ENST00000492270 USP17L3A6NCW0 530 aa31.01■■■□□ 2.55
UPF3A-209ENST00000492270 USP17L4A6NCW7 530 aa31.01■■■□□ 2.55
UPF3A-209ENST00000492270 USP17L1Q7RTZ2 530 aa31.01■■■□□ 2.55
UPF3A-209ENST00000492270 ARHGAP45Q92619 1136 aa31.01■■■□□ 2.55
UPF3A-209ENST00000492270 KLHDC4Q8TBB5 520 aa31■■■□□ 2.55
UPF3A-209ENST00000492270 TRAF5O00463 557 aa30.99■■■□□ 2.55
UPF3A-209ENST00000492270 RBM26Q5T8P6 1007 aaKnown RBP30.99■■■□□ 2.55
UPF3A-209ENST00000492270 FRAT1Q92837 279 aaPredicted RBP30.99■■■□□ 2.55
UPF3A-209ENST00000492270 FBXW7Q969H0 707 aa30.99■■■□□ 2.55
UPF3A-209ENST00000492270 MXD3Q9BW11 206 aa30.99■■■□□ 2.55
UPF3A-209ENST00000492270 UBTFL1P0CB47 393 aaPredicted RBP30.98■■■□□ 2.55
UPF3A-209ENST00000492270 AGBL3Q8NEM8 1001 aa30.98■■■□□ 2.55
UPF3A-209ENST00000492270 GMLQ99445 158 aa30.98■■■□□ 2.55
UPF3A-209ENST00000492270 PGAP2Q9UHJ9 254 aa30.98■■■□□ 2.55
UPF3A-209ENST00000492270 TMEM88BA6NKF7 163 aa30.97■■■□□ 2.55
UPF3A-209ENST00000492270 TRIM27P14373 513 aa30.97■■■□□ 2.55
UPF3A-209ENST00000492270 LRRC24Q50LG9 513 aa30.97■■■□□ 2.55
UPF3A-209ENST00000492270 DACT2Q5SW24 774 aa30.97■■■□□ 2.55
UPF3A-209ENST00000492270 GLIS2Q9BZE0 524 aaPredicted RBP30.97■■■□□ 2.55
UPF3A-209ENST00000492270 RIPOR2Q9Y4F9 1068 aa30.97■■■□□ 2.55
UPF3A-209ENST00000492270 INTS3Q68E01 1043 aaKnown RBP30.96■■■□□ 2.55
UPF3A-209ENST00000492270 C15orf52Q6ZUT6 534 aaKnown RBP30.96■■■□□ 2.55
UPF3A-209ENST00000492270 MEIS3Q99687 375 aa30.96■■■□□ 2.55
UPF3A-209ENST00000492270 KIF4BQ2VIQ3 1234 aa30.95■■■□□ 2.55
UPF3A-209ENST00000492270 ZC3H15Q8WU90 426 aaKnown RBP30.95■■■□□ 2.55
UPF3A-209ENST00000492270 CD209Q9NNX6 404 aa30.95■■■□□ 2.55
UPF3A-209ENST00000492270 RFX5P48382 616 aaPredicted RBP30.94■■■□□ 2.54
UPF3A-209ENST00000492270 STRIP1Q5VSL9 837 aa30.94■■■□□ 2.54
UPF3A-209ENST00000492270 ATF7IPQ6VMQ6 1270 aa30.94■■■□□ 2.54
UPF3A-209ENST00000492270 MKRN1Q9UHC7 482 aaKnown RBP30.94■■■□□ 2.54
UPF3A-209ENST00000492270 LRRFIP2Q9Y608 721 aaKnown RBP30.94■■■□□ 2.54
UPF3A-209ENST00000492270 IPO8O15397 1037 aaKnown RBP30.93■■■□□ 2.54
UPF3A-209ENST00000492270 ZNF280AP59817 542 aaPredicted RBP30.93■■■□□ 2.54
UPF3A-209ENST00000492270 CLUAP1Q96AJ1 413 aa30.93■■■□□ 2.54
UPF3A-209ENST00000492270 MROH5Q6ZUA9 1318 aa30.93■■■□□ 2.54
UPF3A-209ENST00000492270 USP17L8P0C7I0 530 aa30.92■■■□□ 2.54
UPF3A-209ENST00000492270 GTF2IP78347 998 aa30.92■■■□□ 2.54
UPF3A-209ENST00000492270 ASTN2O75129 1339 aaPredicted RBP30.92■■■□□ 2.54
UPF3A-209ENST00000492270 TTLL5Q6EMB2 1281 aa30.91■■■□□ 2.54
UPF3A-209ENST00000492270 ZNF804AQ7Z570 1209 aa30.91■■■□□ 2.54
UPF3A-209ENST00000492270 JMYQ8N9B5 988 aa30.91■■■□□ 2.54
UPF3A-209ENST00000492270 PCNTO95613 3336 aa30.91■■■□□ 2.54
UPF3A-209ENST00000492270 ARAP2Q8WZ64 1704 aa30.9■■■□□ 2.54
UPF3A-209ENST00000492270 UBE4AQ14139 1066 aa30.9■■■□□ 2.54
UPF3A-209ENST00000492270 DLK2Q6UY11 383 aa30.9■■■□□ 2.54
UPF3A-209ENST00000492270 CNTNAP1P78357 1384 aa30.9■■■□□ 2.54
UPF3A-209ENST00000492270 METTL24Q5JXM2 366 aa30.89■■■□□ 2.54
UPF3A-209ENST00000492270 CST9Q5W186 159 aa30.89■■■□□ 2.54
UPF3A-209ENST00000492270 VGLL2Q8N8G2 317 aa30.89■■■□□ 2.54
UPF3A-209ENST00000492270 MYOZ2Q9NPC6 264 aa30.89■■■□□ 2.54
UPF3A-209ENST00000492270 IL1R1P14778 569 aa30.88■■■□□ 2.53
UPF3A-209ENST00000492270 PTPN12Q05209 780 aaKnown RBP30.88■■■□□ 2.53
UPF3A-209ENST00000492270 ZKSCAN2Q63HK3 967 aa30.88■■■□□ 2.53
UPF3A-209ENST00000492270 CDC37L1Q7L3B6 337 aa30.88■■■□□ 2.53
UPF3A-209ENST00000492270 MYO3BQ8WXR4 1341 aa30.88■■■□□ 2.53
UPF3A-209ENST00000492270 MYH13Q9UKX3 1938 aa30.88■■■□□ 2.53
UPF3A-209ENST00000492270 GYG1P46976 350 aa30.87■■■□□ 2.53
UPF3A-209ENST00000492270 USP48Q86UV5 1035 aa30.87■■■□□ 2.53
UPF3A-209ENST00000492270 GGA3Q9NZ52 723 aa30.87■■■□□ 2.53
UPF3A-209ENST00000492270 CERS5Q8N5B7 392 aa30.86■■■□□ 2.53
UPF3A-209ENST00000492270 ABT1Q9ULW3 272 aaKnown RBP30.86■■■□□ 2.53
UPF3A-209ENST00000492270 JAG2Q9Y219 1238 aa30.86■■■□□ 2.53
UPF3A-209ENST00000492270 ECM29Q5VYK3 1845 aa30.85■■■□□ 2.53
UPF3A-209ENST00000492270 EYA2O00167 538 aa30.85■■■□□ 2.53
UPF3A-209ENST00000492270 PDE8BO95263 885 aa30.85■■■□□ 2.53
UPF3A-209ENST00000492270 KIAA0825Q8IV33 1275 aa30.85■■■□□ 2.53
UPF3A-209ENST00000492270 ADM5C9JUS6 153 aa30.84■■■□□ 2.53
UPF3A-209ENST00000492270 CELF2O95319 508 aaKnown RBP30.84■■■□□ 2.53
UPF3A-209ENST00000492270 GNAI3P08754 354 aa30.84■■■□□ 2.53
UPF3A-209ENST00000492270 SCARF1Q14162 830 aa30.84■■■□□ 2.53
UPF3A-209ENST00000492270 KRT26Q7Z3Y9 468 aa30.84■■■□□ 2.53
UPF3A-209ENST00000492270 TMEM57Q8N5G2 664 aa30.84■■■□□ 2.53
UPF3A-209ENST00000492270 DCPSQ96C86 337 aaKnown RBP30.84■■■□□ 2.53
UPF3A-209ENST00000492270 FAM84BQ96KN1 310 aaPredicted RBP30.84■■■□□ 2.53
UPF3A-209ENST00000492270 SIL1Q9H173 461 aa30.84■■■□□ 2.53
UPF3A-209ENST00000492270 ZNF408Q9H9D4 720 aa30.84■■■□□ 2.53
UPF3A-209ENST00000492270 ANGEL2Q5VTE6 544 aaKnown RBP30.83■■■□□ 2.53
UPF3A-209ENST00000492270 ATG9AQ7Z3C6 839 aa30.83■■■□□ 2.53
UPF3A-209ENST00000492270 HDAC5Q9UQL6 1122 aa30.83■■■□□ 2.53
UPF3A-209ENST00000492270 RASSF10A6NK89 507 aa30.82■■■□□ 2.52
UPF3A-209ENST00000492270 PA2G4Q9UQ80 394 aaKnown RBP30.82■■■□□ 2.52
UPF3A-209ENST00000492270 HIBADHP31937 336 aaKnown RBP30.81■■■□□ 2.52
UPF3A-209ENST00000492270 VEGFBP49765 207 aa30.81■■■□□ 2.52
UPF3A-209ENST00000492270 NBPF9Q3BBW0 867 aa30.81■■■□□ 2.52
UPF3A-209ENST00000492270 OGFOD1Q8N543 542 aa30.81■■■□□ 2.52
UPF3A-209ENST00000492270 DEFB115Q30KQ5 88 aa30.8■■■□□ 2.52
UPF3A-209ENST00000492270 TDRD7Q8NHU6 1098 aaKnown RBP30.8■■■□□ 2.52
UPF3A-209ENST00000492270 SCAF8Q9UPN6 1271 aaKnown RBP30.79■■■□□ 2.52
UPF3A-209ENST00000492270 IQSEC3Q9UPP2 1182 aaPredicted RBP30.79■■■□□ 2.52
UPF3A-209ENST00000492270 SASH1O94885 1247 aa30.78■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms