RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 FKBP1BP68106 108 aa13.17□□□□□ -0.3
TTC28-207ENST00000490475 CWF19L2Q2TBE0 894 aaKnown RBP13.17□□□□□ -0.3
TTC28-207ENST00000490475 RBM26Q5T8P6 1007 aaKnown RBP13.17□□□□□ -0.3
TTC28-207ENST00000490475 REM2Q8IYK8 340 aaPredicted RBP13.17□□□□□ -0.3
TTC28-207ENST00000490475 CCDC85AQ96PX6 553 aaPredicted RBP13.17□□□□□ -0.3
TTC28-207ENST00000490475 GREM2Q9H772 168 aa13.17□□□□□ -0.3
TTC28-207ENST00000490475 MINPP1Q9UNW1 487 aa13.17□□□□□ -0.3
TTC28-207ENST00000490475 VAMP4O75379 141 aa13.16□□□□□ -0.3
TTC28-207ENST00000490475 RGMBQ6NW40 437 aa13.16□□□□□ -0.3
TTC28-207ENST00000490475 JARID2Q92833 1246 aaPredicted RBP13.16□□□□□ -0.3
TTC28-207ENST00000490475 CDCA7LQ96GN5 454 aa13.16□□□□□ -0.3
TTC28-207ENST00000490475 KCNQ5Q9NR82 932 aa13.16□□□□□ -0.3
TTC28-207ENST00000490475 GGA3Q9NZ52 723 aa13.16□□□□□ -0.3
TTC28-207ENST00000490475 COL4A1P02462 1669 aa13.15□□□□□ -0.3
TTC28-207ENST00000490475 SHTN1A0MZ66 631 aa13.15□□□□□ -0.3
TTC28-207ENST00000490475 CSF1RP07333 972 aa13.15□□□□□ -0.3
TTC28-207ENST00000490475 ITGA6P23229 1130 aa13.15□□□□□ -0.3
TTC28-207ENST00000490475 STRIP1Q5VSL9 837 aa13.15□□□□□ -0.3
TTC28-207ENST00000490475 MYOZ2Q9NPC6 264 aa13.15□□□□□ -0.3
TTC28-207ENST00000490475 ANKRD18BA2A2Z9 1011 aa13.14□□□□□ -0.31
TTC28-207ENST00000490475 AOC2O75106 756 aa13.14□□□□□ -0.31
TTC28-207ENST00000490475 KCNJ4P48050 445 aa13.14□□□□□ -0.31
TTC28-207ENST00000490475 SLFN5Q08AF3 891 aa13.14□□□□□ -0.31
TTC28-207ENST00000490475 G2E3Q7L622 706 aa13.14□□□□□ -0.31
TTC28-207ENST00000490475 GMLQ99445 158 aa13.14□□□□□ -0.31
TTC28-207ENST00000490475 SAGE1Q9NXZ1 904 aa13.14□□□□□ -0.31
TTC28-207ENST00000490475 HDAC9Q9UKV0 1011 aa13.14□□□□□ -0.31
TTC28-207ENST00000490475 ZNF804BA4D1E1 1349 aa13.13□□□□□ -0.31
TTC28-207ENST00000490475 SPEF2Q9C093 1822 aa13.13□□□□□ -0.31
TTC28-207ENST00000490475 EGFRP00533 1210 aa13.13□□□□□ -0.31
TTC28-207ENST00000490475 NF2P35240 595 aa13.13□□□□□ -0.31
TTC28-207ENST00000490475 ZNF157P51786 506 aaPredicted RBP13.13□□□□□ -0.31
TTC28-207ENST00000490475 IFIT5Q13325 482 aaKnown RBP13.13□□□□□ -0.31
TTC28-207ENST00000490475 SCARF1Q14162 830 aa13.13□□□□□ -0.31
TTC28-207ENST00000490475 ADM5C9JUS6 153 aa13.12□□□□□ -0.31
TTC28-207ENST00000490475 E9PSI1 815 aa13.12□□□□□ -0.31
TTC28-207ENST00000490475 ANGEL2Q5VTE6 544 aaKnown RBP13.12□□□□□ -0.31
TTC28-207ENST00000490475 TTLL5Q6EMB2 1281 aa13.12□□□□□ -0.31
TTC28-207ENST00000490475 CDCA5Q96FF9 252 aa13.12□□□□□ -0.31
TTC28-207ENST00000490475 AKAP11Q9UKA4 1901 aa13.11□□□□□ -0.31
TTC28-207ENST00000490475 CASP7P55210 303 aa13.11□□□□□ -0.31
TTC28-207ENST00000490475 FAM161AQ3B820 660 aa13.11□□□□□ -0.31
TTC28-207ENST00000490475 DACT2Q5SW24 774 aa13.11□□□□□ -0.31
TTC28-207ENST00000490475 C15orf52Q6ZUT6 534 aaKnown RBP13.11□□□□□ -0.31
TTC28-207ENST00000490475 ABHD8Q96I13 439 aa13.11□□□□□ -0.31
TTC28-207ENST00000490475 PAPPA2Q9BXP8 1791 aa13.11□□□□□ -0.31
TTC28-207ENST00000490475 ALDH1L1O75891 902 aa13.1□□□□□ -0.31
TTC28-207ENST00000490475 SLC10A3P09131 477 aa13.1□□□□□ -0.31
TTC28-207ENST00000490475 HNRNPUQ00839 825 aaKnown RBP eCLIP13.1□□□□□ -0.31
TTC28-207ENST00000490475 CHRNDQ07001 517 aa13.1□□□□□ -0.31
TTC28-207ENST00000490475 CCDC57Q2TAC2 916 aa13.1□□□□□ -0.31
TTC28-207ENST00000490475 BEND3Q5T5X7 828 aa13.1□□□□□ -0.31
TTC28-207ENST00000490475 TRMT2AQ8IZ69 625 aaKnown RBP13.1□□□□□ -0.31
TTC28-207ENST00000490475 FBXW7Q969H0 707 aa13.1□□□□□ -0.31
TTC28-207ENST00000490475 C9orf78Q9NZ63 289 aaPredicted RBP13.1□□□□□ -0.31
TTC28-207ENST00000490475 FAM155AB1AL88 458 aaPredicted RBP13.09□□□□□ -0.31
TTC28-207ENST00000490475 GRM8O00222 908 aa13.09□□□□□ -0.31
TTC28-207ENST00000490475 TAF7LQ5H9L4 462 aa13.09□□□□□ -0.31
TTC28-207ENST00000490475 ZNF804AQ7Z570 1209 aa13.09□□□□□ -0.31
TTC28-207ENST00000490475 APOBEC3FQ8IUX4 373 aaKnown RBP13.09□□□□□ -0.31
TTC28-207ENST00000490475 CASP8AP2Q9UKL3 1982 aa13.09□□□□□ -0.31
TTC28-207ENST00000490475 WNT10BO00744 389 aa13.08□□□□□ -0.32
TTC28-207ENST00000490475 FKBP1AP62942 108 aaKnown RBP13.08□□□□□ -0.32
TTC28-207ENST00000490475 SRCIN1Q9C0H9 1055 aa13.08□□□□□ -0.32
TTC28-207ENST00000490475 CHMP3Q9Y3E7 222 aa13.08□□□□□ -0.32
TTC28-207ENST00000490475 COL1A1P02452 1464 aaPredicted RBP13.08□□□□□ -0.32
TTC28-207ENST00000490475 MYO1BO43795 1136 aa13.07□□□□□ -0.32
TTC28-207ENST00000490475 KIF23Q02241 960 aaPredicted RBP13.07□□□□□ -0.32
TTC28-207ENST00000490475 LDHAL6AQ6ZMR3 332 aa13.07□□□□□ -0.32
TTC28-207ENST00000490475 ARMC9Q7Z3E5 817 aa13.07□□□□□ -0.32
TTC28-207ENST00000490475 CD209Q9NNX6 404 aa13.07□□□□□ -0.32
TTC28-207ENST00000490475 GTF2IP78347 998 aa13.06□□□□□ -0.32
TTC28-207ENST00000490475 FOXO4P98177 505 aa13.06□□□□□ -0.32
TTC28-207ENST00000490475 NBPF9Q3BBW0 867 aa13.06□□□□□ -0.32
TTC28-207ENST00000490475 LMBR1LQ6UX01 489 aa13.06□□□□□ -0.32
TTC28-207ENST00000490475 TXNRD3Q86VQ6 643 aa13.06□□□□□ -0.32
TTC28-207ENST00000490475 MTMR14Q8NCE2 650 aa13.06□□□□□ -0.32
TTC28-207ENST00000490475 CNNM1Q9NRU3 951 aa13.06□□□□□ -0.32
TTC28-207ENST00000490475 TSKSQ9UJT2 592 aa13.06□□□□□ -0.32
TTC28-207ENST00000490475 PPP2R3BQ9Y5P8 575 aa13.06□□□□□ -0.32
TTC28-207ENST00000490475 ASTN2O75129 1339 aaPredicted RBP13.06□□□□□ -0.32
TTC28-207ENST00000490475 ZNF646O15015 1829 aaPredicted RBP13.05□□□□□ -0.32
TTC28-207ENST00000490475 UNCXA6NJT0 531 aa13.05□□□□□ -0.32
TTC28-207ENST00000490475 F6X3S4 739 aa13.05□□□□□ -0.32
TTC28-207ENST00000490475 CENPBP07199 599 aaPredicted RBP13.05□□□□□ -0.32
TTC28-207ENST00000490475 IL1R1P14778 569 aa13.05□□□□□ -0.32
TTC28-207ENST00000490475 UBE4AQ14139 1066 aa13.05□□□□□ -0.32
TTC28-207ENST00000490475 TTLL12Q14166 644 aaPredicted RBP13.05□□□□□ -0.32
TTC28-207ENST00000490475 DLGAP5Q15398 846 aa13.05□□□□□ -0.32
TTC28-207ENST00000490475 RASAL3Q86YV0 1011 aa13.05□□□□□ -0.32
TTC28-207ENST00000490475 KIAA0825Q8IV33 1275 aa13.05□□□□□ -0.32
TTC28-207ENST00000490475 PTPRCP08575 1304 aa13.05□□□□□ -0.32
TTC28-207ENST00000490475 CCDC85CA6NKD9 419 aa13.04□□□□□ -0.32
TTC28-207ENST00000490475 SREBF2Q12772 1141 aa13.04□□□□□ -0.32
TTC28-207ENST00000490475 DGKZQ13574 1117 aa13.04□□□□□ -0.32
TTC28-207ENST00000490475 SLC4A10Q6U841 1118 aa13.04□□□□□ -0.32
TTC28-207ENST00000490475 DLK2Q6UY11 383 aa13.04□□□□□ -0.32
TTC28-207ENST00000490475 MRPL50Q8N5N7 158 aaKnown RBP13.04□□□□□ -0.32
TTC28-207ENST00000490475 SSH1Q8WYL5 1049 aa13.04□□□□□ -0.32
TTC28-207ENST00000490475 CSRNP1Q96S65 589 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms