RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PAPPA2Q9BXP8 1791 aa15.9■□□□□ 0.14
CPSF3-204ENST00000489403 CCDC85CA6NKD9 419 aa15.89■□□□□ 0.13
CPSF3-204ENST00000489403 SLC10A3P09131 477 aa15.89■□□□□ 0.13
CPSF3-204ENST00000489403 CCT4P50991 539 aaKnown RBP15.89■□□□□ 0.13
CPSF3-204ENST00000489403 FLIIQ13045 1269 aa15.89■□□□□ 0.13
CPSF3-204ENST00000489403 PITPNM2Q9BZ72 1349 aa15.89■□□□□ 0.13
CPSF3-204ENST00000489403 CACNA1FO60840 1977 aa15.88■□□□□ 0.13
CPSF3-204ENST00000489403 KIF23Q02241 960 aaPredicted RBP15.88■□□□□ 0.13
CPSF3-204ENST00000489403 GCKRQ14397 625 aa15.88■□□□□ 0.13
CPSF3-204ENST00000489403 FAM161AQ3B820 660 aa15.88■□□□□ 0.13
CPSF3-204ENST00000489403 PLA2G12BQ9BX93 195 aa15.88■□□□□ 0.13
CPSF3-204ENST00000489403 SCAF8Q9UPN6 1271 aaKnown RBP15.88■□□□□ 0.13
CPSF3-204ENST00000489403 AKAP11Q9UKA4 1901 aa15.88■□□□□ 0.13
CPSF3-204ENST00000489403 ITGA6P23229 1130 aa15.87■□□□□ 0.13
CPSF3-204ENST00000489403 IGHMBP2P38935 993 aaKnown RBP15.87■□□□□ 0.13
CPSF3-204ENST00000489403 CASP7P55210 303 aa15.87■□□□□ 0.13
CPSF3-204ENST00000489403 NCBP3Q53F19 620 aaKnown RBP15.87■□□□□ 0.13
CPSF3-204ENST00000489403 DACT2Q5SW24 774 aa15.87■□□□□ 0.13
CPSF3-204ENST00000489403 TXNRD3Q86VQ6 643 aa15.87■□□□□ 0.13
CPSF3-204ENST00000489403 MXD3Q9BW11 206 aa15.87■□□□□ 0.13
CPSF3-204ENST00000489403 SAGE1Q9NXZ1 904 aa15.87■□□□□ 0.13
CPSF3-204ENST00000489403 FANCIQ9NVI1 1328 aa15.87■□□□□ 0.13
CPSF3-204ENST00000489403 FKBP5Q13451 457 aaPredicted RBP15.86■□□□□ 0.13
CPSF3-204ENST00000489403 DGKZQ13574 1117 aa15.86■□□□□ 0.13
CPSF3-204ENST00000489403 RASAL3Q86YV0 1011 aa15.86■□□□□ 0.13
CPSF3-204ENST00000489403 DNAAF4Q8WXU2 420 aa15.86■□□□□ 0.13
CPSF3-204ENST00000489403 FBXW7Q969H0 707 aa15.86■□□□□ 0.13
CPSF3-204ENST00000489403 COA1Q9GZY4 146 aa15.86■□□□□ 0.13
CPSF3-204ENST00000489403 LEMD3Q9Y2U8 911 aa15.86■□□□□ 0.13
CPSF3-204ENST00000489403 A0A1B0GUL6 1792 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 CSF1RP07333 972 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 KLRK1P26718 216 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 FKBP1BP68106 108 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 NBPF9Q3BBW0 867 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 STRIP1Q5VSL9 837 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 CSRNP1Q96S65 589 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 MYH16Q9H6N6 1097 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 ZNF804BA4D1E1 1349 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 MYO3BQ8WXR4 1341 aa15.85■□□□□ 0.13
CPSF3-204ENST00000489403 WNT10BO00744 389 aa15.84■□□□□ 0.13
CPSF3-204ENST00000489403 MOB2Q70IA6 237 aa15.84■□□□□ 0.13
CPSF3-204ENST00000489403 LINS1Q8NG48 757 aa15.84■□□□□ 0.13
CPSF3-204ENST00000489403 MPHOSPH8Q99549 860 aa15.84■□□□□ 0.13
CPSF3-204ENST00000489403 MRS2Q9HD23 443 aa15.84■□□□□ 0.13
CPSF3-204ENST00000489403 RNF186Q9NXI6 227 aa15.84■□□□□ 0.13
CPSF3-204ENST00000489403 VAMP4O75379 141 aa15.83■□□□□ 0.12
CPSF3-204ENST00000489403 TRPA1O75762 1119 aa15.83■□□□□ 0.12
CPSF3-204ENST00000489403 RGS19P49795 217 aa15.83■□□□□ 0.12
CPSF3-204ENST00000489403 PRAMEF18Q5VWM3 479 aa15.83■□□□□ 0.12
CPSF3-204ENST00000489403 OGFOD1Q8N543 542 aa15.83■□□□□ 0.12
CPSF3-204ENST00000489403 ANKRD2Q9GZV1 360 aa15.83■□□□□ 0.12
CPSF3-204ENST00000489403 SALL2Q9Y467 1007 aaPredicted RBP15.83■□□□□ 0.12
CPSF3-204ENST00000489403 CHRNDQ07001 517 aa15.82■□□□□ 0.12
CPSF3-204ENST00000489403 TTLL5Q6EMB2 1281 aa15.82■□□□□ 0.12
CPSF3-204ENST00000489403 WDR63Q8IWG1 891 aa15.82■□□□□ 0.12
CPSF3-204ENST00000489403 SASH1O94885 1247 aa15.81■□□□□ 0.12
CPSF3-204ENST00000489403 MLLT1Q03111 559 aaPredicted RBP15.81■□□□□ 0.12
CPSF3-204ENST00000489403 EXOSC9Q06265 439 aaKnown RBP15.81■□□□□ 0.12
CPSF3-204ENST00000489403 IRS2Q9Y4H2 1338 aa15.81■□□□□ 0.12
CPSF3-204ENST00000489403 ANKRD18BA2A2Z9 1011 aa15.8■□□□□ 0.12
CPSF3-204ENST00000489403 F6X3S4 739 aa15.8■□□□□ 0.12
CPSF3-204ENST00000489403 UBE2Q2LH0YL09 131 aa15.8■□□□□ 0.12
CPSF3-204ENST00000489403 SNAP23O00161 211 aa15.8■□□□□ 0.12
CPSF3-204ENST00000489403 KCNJ4P48050 445 aa15.8■□□□□ 0.12
CPSF3-204ENST00000489403 GTF2IP78347 998 aa15.8■□□□□ 0.12
CPSF3-204ENST00000489403 FOXO4P98177 505 aa15.8■□□□□ 0.12
CPSF3-204ENST00000489403 KIAA0825Q8IV33 1275 aa15.8■□□□□ 0.12
CPSF3-204ENST00000489403 REM2Q8IYK8 340 aaPredicted RBP15.8■□□□□ 0.12
CPSF3-204ENST00000489403 MMP14P50281 582 aa15.79■□□□□ 0.12
CPSF3-204ENST00000489403 BEND3Q5T5X7 828 aa15.79■□□□□ 0.12
CPSF3-204ENST00000489403 CD209Q9NNX6 404 aa15.79■□□□□ 0.12
CPSF3-204ENST00000489403 SPINK5Q9NQ38 1064 aaPredicted RBP15.79■□□□□ 0.12
CPSF3-204ENST00000489403 HDAC9Q9UKV0 1011 aa15.79■□□□□ 0.12
CPSF3-204ENST00000489403 ECM29Q5VYK3 1845 aa15.78■□□□□ 0.12
CPSF3-204ENST00000489403 ANP32CO43423 234 aa15.78■□□□□ 0.12
CPSF3-204ENST00000489403 TAF5LO75529 589 aa15.78■□□□□ 0.12
CPSF3-204ENST00000489403 IFIT5Q13325 482 aaKnown RBP15.78■□□□□ 0.12
CPSF3-204ENST00000489403 TTLL12Q14166 644 aaPredicted RBP15.78■□□□□ 0.12
CPSF3-204ENST00000489403 ZBED3Q96IU2 234 aaPredicted RBP15.78■□□□□ 0.12
CPSF3-204ENST00000489403 NF2P35240 595 aa15.77■□□□□ 0.12
CPSF3-204ENST00000489403 C15orf52Q6ZUT6 534 aaKnown RBP15.77■□□□□ 0.12
CPSF3-204ENST00000489403 APOBEC3FQ8IUX4 373 aaKnown RBP15.77■□□□□ 0.12
CPSF3-204ENST00000489403 CERS5Q8N5B7 392 aa15.77■□□□□ 0.12
CPSF3-204ENST00000489403 HELBQ8NG08 1087 aaPredicted RBP15.77■□□□□ 0.12
CPSF3-204ENST00000489403 CHMP3Q9Y3E7 222 aa15.77■□□□□ 0.12
CPSF3-204ENST00000489403 COL1A1P02452 1464 aaPredicted RBP15.77■□□□□ 0.11
CPSF3-204ENST00000489403 EPHA10Q5JZY3 1008 aa15.76■□□□□ 0.11
CPSF3-204ENST00000489403 LMBR1LQ6UX01 489 aa15.76■□□□□ 0.11
CPSF3-204ENST00000489403 MKRN3Q13064 507 aaKnown RBP15.75■□□□□ 0.11
CPSF3-204ENST00000489403 PRKG1Q13976 671 aa15.75■□□□□ 0.11
CPSF3-204ENST00000489403 CTU1Q7Z7A3 348 aaKnown RBP15.75■□□□□ 0.11
CPSF3-204ENST00000489403 GRM8O00222 908 aa15.74■□□□□ 0.11
CPSF3-204ENST00000489403 TBC1D8O95759 1140 aa15.74■□□□□ 0.11
CPSF3-204ENST00000489403 IL1R1P14778 569 aa15.74■□□□□ 0.11
CPSF3-204ENST00000489403 PTPN12Q05209 780 aaKnown RBP15.74■□□□□ 0.11
CPSF3-204ENST00000489403 ARMC9Q7Z3E5 817 aa15.74■□□□□ 0.11
CPSF3-204ENST00000489403 ZNF594Q96JF6 807 aaPredicted RBP15.74■□□□□ 0.11
CPSF3-204ENST00000489403 PCDHAC2Q9Y5I4 1007 aa15.74■□□□□ 0.11
CPSF3-204ENST00000489403 SSC5DA1L4H1 1573 aa15.74■□□□□ 0.11
CPSF3-204ENST00000489403 TM4SF4P48230 202 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms