RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 ZBED9Q6R2W3 1325 aa26.63■■□□□ 1.85
LIME1-207ENST00000489212 KIF16BQ96L93 1317 aa26.63■■□□□ 1.85
LIME1-207ENST00000489212 ZNF646O15015 1829 aaPredicted RBP26.62■■□□□ 1.85
LIME1-207ENST00000489212 FMR1Q06787 632 aaKnown RBP eCLIP26.62■■□□□ 1.85
LIME1-207ENST00000489212 ARHGAP45Q92619 1136 aa26.62■■□□□ 1.85
LIME1-207ENST00000489212 PGAP2Q9UHJ9 254 aa26.62■■□□□ 1.85
LIME1-207ENST00000489212 PCNTO95613 3336 aa26.62■■□□□ 1.85
LIME1-207ENST00000489212 USP17L3A6NCW0 530 aa26.61■■□□□ 1.85
LIME1-207ENST00000489212 USP17L4A6NCW7 530 aa26.61■■□□□ 1.85
LIME1-207ENST00000489212 USP17L1Q7RTZ2 530 aa26.61■■□□□ 1.85
LIME1-207ENST00000489212 GMLQ99445 158 aa26.61■■□□□ 1.85
LIME1-207ENST00000489212 ZNF609O15014 1411 aa26.61■■□□□ 1.85
LIME1-207ENST00000489212 PLIN1O60240 522 aa26.6■■□□□ 1.85
LIME1-207ENST00000489212 TBC1D10BQ4KMP7 808 aaPredicted RBP26.6■■□□□ 1.85
LIME1-207ENST00000489212 C15orf52Q6ZUT6 534 aaKnown RBP26.59■■□□□ 1.85
LIME1-207ENST00000489212 AGBL3Q8NEM8 1001 aa26.59■■□□□ 1.85
LIME1-207ENST00000489212 MXD3Q9BW11 206 aa26.59■■□□□ 1.85
LIME1-207ENST00000489212 TNNQ9UQP3 1299 aa26.59■■□□□ 1.85
LIME1-207ENST00000489212 RIPOR2Q9Y4F9 1068 aa26.59■■□□□ 1.85
LIME1-207ENST00000489212 TMEM88BA6NKF7 163 aa26.58■■□□□ 1.85
LIME1-207ENST00000489212 TRAF5O00463 557 aa26.58■■□□□ 1.85
LIME1-207ENST00000489212 DACT2Q5SW24 774 aa26.58■■□□□ 1.85
LIME1-207ENST00000489212 KLHDC4Q8TBB5 520 aa26.58■■□□□ 1.85
LIME1-207ENST00000489212 ZC3H15Q8WU90 426 aaKnown RBP26.58■■□□□ 1.85
LIME1-207ENST00000489212 LRRC24Q50LG9 513 aa26.57■■□□□ 1.84
LIME1-207ENST00000489212 RBM26Q5T8P6 1007 aaKnown RBP26.57■■□□□ 1.84
LIME1-207ENST00000489212 GLIS2Q9BZE0 524 aaPredicted RBP26.57■■□□□ 1.84
LIME1-207ENST00000489212 CD209Q9NNX6 404 aa26.57■■□□□ 1.84
LIME1-207ENST00000489212 UBTFL1P0CB47 393 aaPredicted RBP26.56■■□□□ 1.84
LIME1-207ENST00000489212 TRIM27P14373 513 aa26.56■■□□□ 1.84
LIME1-207ENST00000489212 ZNF280AP59817 542 aaPredicted RBP26.56■■□□□ 1.84
LIME1-207ENST00000489212 STRIP1Q5VSL9 837 aa26.56■■□□□ 1.84
LIME1-207ENST00000489212 INTS3Q68E01 1043 aaKnown RBP26.56■■□□□ 1.84
LIME1-207ENST00000489212 RFX5P48382 616 aaPredicted RBP26.55■■□□□ 1.84
LIME1-207ENST00000489212 KIF4BQ2VIQ3 1234 aa26.55■■□□□ 1.84
LIME1-207ENST00000489212 JMYQ8N9B5 988 aa26.55■■□□□ 1.84
LIME1-207ENST00000489212 FRAT1Q92837 279 aaPredicted RBP26.55■■□□□ 1.84
LIME1-207ENST00000489212 FBXW7Q969H0 707 aa26.55■■□□□ 1.84
LIME1-207ENST00000489212 MEIS3Q99687 375 aa26.55■■□□□ 1.84
LIME1-207ENST00000489212 TRPM7Q96QT4 1865 aa26.54■■□□□ 1.84
LIME1-207ENST00000489212 IPO8O15397 1037 aaKnown RBP26.54■■□□□ 1.84
LIME1-207ENST00000489212 ATF7IPQ6VMQ6 1270 aa26.54■■□□□ 1.84
LIME1-207ENST00000489212 MKRN1Q9UHC7 482 aaKnown RBP26.54■■□□□ 1.84
LIME1-207ENST00000489212 POLR2AP24928 1970 aaKnown RBP26.54■■□□□ 1.84
LIME1-207ENST00000489212 USP17L8P0C7I0 530 aa26.53■■□□□ 1.84
LIME1-207ENST00000489212 TTLL5Q6EMB2 1281 aa26.53■■□□□ 1.84
LIME1-207ENST00000489212 LRRFIP2Q9Y608 721 aaKnown RBP26.53■■□□□ 1.84
LIME1-207ENST00000489212 MROH5Q6ZUA9 1318 aa26.53■■□□□ 1.84
LIME1-207ENST00000489212 ASTN2O75129 1339 aaPredicted RBP26.52■■□□□ 1.84
LIME1-207ENST00000489212 GTF2IP78347 998 aa26.52■■□□□ 1.84
LIME1-207ENST00000489212 UBE4AQ14139 1066 aa26.52■■□□□ 1.84
LIME1-207ENST00000489212 CST9Q5W186 159 aa26.52■■□□□ 1.84
LIME1-207ENST00000489212 CNTNAP1P78357 1384 aa26.51■■□□□ 1.83
LIME1-207ENST00000489212 IL1R1P14778 569 aa26.51■■□□□ 1.83
LIME1-207ENST00000489212 DLK2Q6UY11 383 aa26.51■■□□□ 1.83
LIME1-207ENST00000489212 VGLL2Q8N8G2 317 aa26.51■■□□□ 1.83
LIME1-207ENST00000489212 PTPN12Q05209 780 aaKnown RBP26.5■■□□□ 1.83
LIME1-207ENST00000489212 METTL24Q5JXM2 366 aa26.5■■□□□ 1.83
LIME1-207ENST00000489212 CDC37L1Q7L3B6 337 aa26.5■■□□□ 1.83
LIME1-207ENST00000489212 ZNF804AQ7Z570 1209 aa26.5■■□□□ 1.83
LIME1-207ENST00000489212 USP48Q86UV5 1035 aa26.5■■□□□ 1.83
LIME1-207ENST00000489212 CLUAP1Q96AJ1 413 aa26.5■■□□□ 1.83
LIME1-207ENST00000489212 MYOZ2Q9NPC6 264 aa26.5■■□□□ 1.83
LIME1-207ENST00000489212 MYO3BQ8WXR4 1341 aa26.49■■□□□ 1.83
LIME1-207ENST00000489212 GYG1P46976 350 aa26.48■■□□□ 1.83
LIME1-207ENST00000489212 SCARF1Q14162 830 aa26.48■■□□□ 1.83
LIME1-207ENST00000489212 EYA2O00167 538 aa26.47■■□□□ 1.83
LIME1-207ENST00000489212 ZKSCAN2Q63HK3 967 aa26.47■■□□□ 1.83
LIME1-207ENST00000489212 CERS5Q8N5B7 392 aa26.47■■□□□ 1.83
LIME1-207ENST00000489212 FAM84BQ96KN1 310 aaPredicted RBP26.47■■□□□ 1.83
LIME1-207ENST00000489212 GGA3Q9NZ52 723 aa26.47■■□□□ 1.83
LIME1-207ENST00000489212 RASSF10A6NK89 507 aa26.46■■□□□ 1.83
LIME1-207ENST00000489212 ADM5C9JUS6 153 aa26.46■■□□□ 1.83
LIME1-207ENST00000489212 PDE8BO95263 885 aa26.46■■□□□ 1.83
LIME1-207ENST00000489212 CELF2O95319 508 aaKnown RBP26.46■■□□□ 1.83
LIME1-207ENST00000489212 KRT26Q7Z3Y9 468 aa26.46■■□□□ 1.83
LIME1-207ENST00000489212 KIAA0825Q8IV33 1275 aa26.46■■□□□ 1.83
LIME1-207ENST00000489212 DCPSQ96C86 337 aaKnown RBP26.46■■□□□ 1.83
LIME1-207ENST00000489212 ABT1Q9ULW3 272 aaKnown RBP26.46■■□□□ 1.83
LIME1-207ENST00000489212 JAG2Q9Y219 1238 aa26.46■■□□□ 1.83
LIME1-207ENST00000489212 GNAI3P08754 354 aa26.45■■□□□ 1.82
LIME1-207ENST00000489212 VEGFBP49765 207 aa26.45■■□□□ 1.82
LIME1-207ENST00000489212 ATG9AQ7Z3C6 839 aa26.45■■□□□ 1.82
LIME1-207ENST00000489212 TMEM57Q8N5G2 664 aa26.45■■□□□ 1.82
LIME1-207ENST00000489212 HDAC5Q9UQL6 1122 aa26.45■■□□□ 1.82
LIME1-207ENST00000489212 HIBADHP31937 336 aaKnown RBP26.44■■□□□ 1.82
LIME1-207ENST00000489212 ANGEL2Q5VTE6 544 aaKnown RBP26.44■■□□□ 1.82
LIME1-207ENST00000489212 TDRD7Q8NHU6 1098 aaKnown RBP26.44■■□□□ 1.82
LIME1-207ENST00000489212 ZNF408Q9H9D4 720 aa26.44■■□□□ 1.82
LIME1-207ENST00000489212 DEFB115Q30KQ5 88 aa26.43■■□□□ 1.82
LIME1-207ENST00000489212 NBPF9Q3BBW0 867 aa26.43■■□□□ 1.82
LIME1-207ENST00000489212 FBXO33Q7Z6M2 555 aa26.43■■□□□ 1.82
LIME1-207ENST00000489212 OGFOD1Q8N543 542 aa26.43■■□□□ 1.82
LIME1-207ENST00000489212 SIL1Q9H173 461 aa26.43■■□□□ 1.82
LIME1-207ENST00000489212 PA2G4Q9UQ80 394 aaKnown RBP26.43■■□□□ 1.82
LIME1-207ENST00000489212 SASH1O94885 1247 aa26.42■■□□□ 1.82
LIME1-207ENST00000489212 FGFR2P21802 821 aa26.42■■□□□ 1.82
LIME1-207ENST00000489212 TLL2Q9Y6L7 1015 aa26.42■■□□□ 1.82
LIME1-207ENST00000489212 FAM205AQ6ZU69 1335 aa26.41■■□□□ 1.82
LIME1-207ENST00000489212 WNT10BO00744 389 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms