RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 HIP1O00291 1037 aa14.65□□□□□ -0.06
HDAC6-230ENST00000488543 DDIT3P35638 169 aa14.65□□□□□ -0.06
HDAC6-230ENST00000488543 RTL9Q8NET4 1388 aa14.65□□□□□ -0.06
HDAC6-230ENST00000488543 MED23Q9ULK4 1368 aa14.65□□□□□ -0.06
HDAC6-230ENST00000488543 PDE8BO95263 885 aa14.65□□□□□ -0.06
HDAC6-230ENST00000488543 HSP90AA1P07900 732 aaKnown RBP14.65□□□□□ -0.06
HDAC6-230ENST00000488543 MCCP23508 829 aa14.65□□□□□ -0.06
HDAC6-230ENST00000488543 RGPD3A6NKT7 1758 aaPredicted RBP14.64□□□□□ -0.07
HDAC6-230ENST00000488543 RGPD4Q7Z3J3 1758 aa14.64□□□□□ -0.07
HDAC6-230ENST00000488543 A0A0D9SFI3 127 aa14.64□□□□□ -0.07
HDAC6-230ENST00000488543 PTH1RQ03431 593 aa14.64□□□□□ -0.07
HDAC6-230ENST00000488543 ANKRD18AQ8IVF6 992 aa14.64□□□□□ -0.07
HDAC6-230ENST00000488543 XAGE2Q96GT9 111 aa14.64□□□□□ -0.07
HDAC6-230ENST00000488543 CDC5LQ99459 802 aaKnown RBP14.64□□□□□ -0.07
HDAC6-230ENST00000488543 AKAP2Q9Y2D5 859 aa14.64□□□□□ -0.07
HDAC6-230ENST00000488543 L1TD1Q5T7N2 865 aaKnown RBP14.64□□□□□ -0.07
HDAC6-230ENST00000488543 FAM43AQ8N2R8 423 aa14.64□□□□□ -0.07
HDAC6-230ENST00000488543 DNAJC2Q99543 621 aaKnown RBP14.64□□□□□ -0.07
HDAC6-230ENST00000488543 AKAP11Q9UKA4 1901 aa14.63□□□□□ -0.07
HDAC6-230ENST00000488543 TNRC6CQ9HCJ0 1690 aaKnown RBP14.63□□□□□ -0.07
HDAC6-230ENST00000488543 RPS8P62241 208 aaKnown RBP14.63□□□□□ -0.07
HDAC6-230ENST00000488543 ST5P78524 1137 aa14.63□□□□□ -0.07
HDAC6-230ENST00000488543 CHRNDQ07001 517 aa14.63□□□□□ -0.07
HDAC6-230ENST00000488543 ATP2B3Q16720 1220 aa14.63□□□□□ -0.07
HDAC6-230ENST00000488543 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.63□□□□□ -0.07
HDAC6-230ENST00000488543 A0A1B0GUL6 1792 aa14.63□□□□□ -0.07
HDAC6-230ENST00000488543 FSD2A1L4K1 749 aa14.63□□□□□ -0.07
HDAC6-230ENST00000488543 DDX46Q7L014 1031 aaKnown RBP14.63□□□□□ -0.07
HDAC6-230ENST00000488543 KIAA1211Q6ZU35 1233 aa14.62□□□□□ -0.07
HDAC6-230ENST00000488543 MINPP1Q9UNW1 487 aa14.62□□□□□ -0.07
HDAC6-230ENST00000488543 MROH5Q6ZUA9 1318 aa14.62□□□□□ -0.07
HDAC6-230ENST00000488543 CHGBP05060 677 aa14.61□□□□□ -0.07
HDAC6-230ENST00000488543 KBTBD3Q8NAB2 608 aa14.61□□□□□ -0.07
HDAC6-230ENST00000488543 BSDC1Q9NW68 430 aaPredicted RBP14.61□□□□□ -0.07
HDAC6-230ENST00000488543 PARP3Q9Y6F1 533 aa14.61□□□□□ -0.07
HDAC6-230ENST00000488543 CCDC171Q6TFL3 1326 aa14.61□□□□□ -0.07
HDAC6-230ENST00000488543 IFIT1P09914 478 aaKnown RBP14.61□□□□□ -0.07
HDAC6-230ENST00000488543 GORABQ5T7V8 394 aa14.61□□□□□ -0.07
HDAC6-230ENST00000488543 CCDC125Q86Z20 511 aa14.61□□□□□ -0.07
HDAC6-230ENST00000488543 KCNB2Q92953 911 aa14.61□□□□□ -0.07
HDAC6-230ENST00000488543 PAG1Q9NWQ8 432 aa14.61□□□□□ -0.07
HDAC6-230ENST00000488543 SNX14Q9Y5W7 946 aa14.61□□□□□ -0.07
HDAC6-230ENST00000488543 PI16Q6UXB8 463 aa14.6□□□□□ -0.07
HDAC6-230ENST00000488543 RASEFQ8IZ41 740 aa14.6□□□□□ -0.07
HDAC6-230ENST00000488543 GOLIM4O00461 696 aa14.6□□□□□ -0.07
HDAC6-230ENST00000488543 ST18O60284 1047 aa14.6□□□□□ -0.07
HDAC6-230ENST00000488543 FGFR2P21802 821 aa14.6□□□□□ -0.07
HDAC6-230ENST00000488543 SCARF1Q14162 830 aa14.6□□□□□ -0.07
HDAC6-230ENST00000488543 CRY2Q49AN0 593 aa14.6□□□□□ -0.07
HDAC6-230ENST00000488543 ZNF589Q86UQ0 364 aaPredicted RBP14.6□□□□□ -0.07
HDAC6-230ENST00000488543 MYH7P12883 1935 aa14.6□□□□□ -0.07
HDAC6-230ENST00000488543 PUM3Q15397 648 aaKnown RBP14.59□□□□□ -0.07
HDAC6-230ENST00000488543 GAS2L3Q86XJ1 694 aa14.59□□□□□ -0.07
HDAC6-230ENST00000488543 RPGRQ92834 1020 aaKnown RBP14.59□□□□□ -0.07
HDAC6-230ENST00000488543 UPF1Q92900 1129 aaKnown RBP eCLIP14.59□□□□□ -0.07
HDAC6-230ENST00000488543 NEK4P51957 841 aa14.59□□□□□ -0.07
HDAC6-230ENST00000488543 TTC39AQ5SRH9 613 aa14.59□□□□□ -0.07
HDAC6-230ENST00000488543 MAP4K1Q92918 833 aa14.59□□□□□ -0.07
HDAC6-230ENST00000488543 PHKA1P46020 1223 aa14.58□□□□□ -0.07
HDAC6-230ENST00000488543 NECTIN1Q15223 517 aa14.58□□□□□ -0.07
HDAC6-230ENST00000488543 CCDC158Q5M9N0 1113 aa14.58□□□□□ -0.07
HDAC6-230ENST00000488543 LPIN2Q92539 896 aa14.58□□□□□ -0.07
HDAC6-230ENST00000488543 GRAPQ13588 217 aa14.58□□□□□ -0.08
HDAC6-230ENST00000488543 RAB3GAP1Q15042 981 aa14.58□□□□□ -0.08
HDAC6-230ENST00000488543 TICAM2Q86XR7 235 aa14.58□□□□□ -0.08
HDAC6-230ENST00000488543 GRAPLQ8TC17 118 aaPredicted RBP14.58□□□□□ -0.08
HDAC6-230ENST00000488543 BRIP1Q9BX63 1249 aa14.58□□□□□ -0.08
HDAC6-230ENST00000488543 RBM8AQ9Y5S9 174 aaKnown RBP14.58□□□□□ -0.08
HDAC6-230ENST00000488543 UTRNP46939 3433 aa14.58□□□□□ -0.08
HDAC6-230ENST00000488543 DDX11L8A8MPP1 907 aa14.57□□□□□ -0.08
HDAC6-230ENST00000488543 BCAMP50895 628 aa14.57□□□□□ -0.08
HDAC6-230ENST00000488543 FKBP4Q02790 459 aaKnown RBP eCLIP14.57□□□□□ -0.08
HDAC6-230ENST00000488543 SLFNL1Q499Z3 407 aa14.57□□□□□ -0.08
HDAC6-230ENST00000488543 CCDC102BQ68D86 513 aa14.57□□□□□ -0.08
HDAC6-230ENST00000488543 SEC62Q99442 399 aaKnown RBP14.57□□□□□ -0.08
HDAC6-230ENST00000488543 MYO5AQ9Y4I1 1855 aaKnown RBP14.57□□□□□ -0.08
HDAC6-230ENST00000488543 KLRG2A4D1S0 409 aaPredicted RBP14.57□□□□□ -0.08
HDAC6-230ENST00000488543 KLRK1P26718 216 aa14.57□□□□□ -0.08
HDAC6-230ENST00000488543 PKP1Q13835 747 aa14.57□□□□□ -0.08
HDAC6-230ENST00000488543 PRPF40BQ6NWY9 871 aaKnown RBP14.57□□□□□ -0.08
HDAC6-230ENST00000488543 CHAMP1Q96JM3 812 aa14.57□□□□□ -0.08
HDAC6-230ENST00000488543 ZNF512BQ96KM6 892 aaPredicted RBP14.57□□□□□ -0.08
HDAC6-230ENST00000488543 UPF3BQ9BZI7 483 aaKnown RBP14.57□□□□□ -0.08
HDAC6-230ENST00000488543 CCDC129Q6ZRS4 1044 aa14.56□□□□□ -0.08
HDAC6-230ENST00000488543 MCAMP43121 646 aa14.56□□□□□ -0.08
HDAC6-230ENST00000488543 ZMYM1Q5SVZ6 1142 aa14.56□□□□□ -0.08
HDAC6-230ENST00000488543 GRPEL1Q9HAV7 217 aa14.56□□□□□ -0.08
HDAC6-230ENST00000488543 IQSEC3Q9UPP2 1182 aaPredicted RBP14.56□□□□□ -0.08
HDAC6-230ENST00000488543 ZBTB7AO95365 584 aa14.55□□□□□ -0.08
HDAC6-230ENST00000488543 SRGNP10124 158 aa14.55□□□□□ -0.08
HDAC6-230ENST00000488543 SLC5A1P13866 664 aa14.55□□□□□ -0.08
HDAC6-230ENST00000488543 ZAP70P43403 619 aa14.55□□□□□ -0.08
HDAC6-230ENST00000488543 GYG1P46976 350 aa14.55□□□□□ -0.08
HDAC6-230ENST00000488543 MCMDC2Q4G0Z9 681 aa14.55□□□□□ -0.08
HDAC6-230ENST00000488543 CREB3L3Q68CJ9 461 aa14.55□□□□□ -0.08
HDAC6-230ENST00000488543 OLFM4Q6UX06 510 aa14.55□□□□□ -0.08
HDAC6-230ENST00000488543 RBM17Q96I25 401 aaKnown RBP14.55□□□□□ -0.08
HDAC6-230ENST00000488543 TTC14Q96N46 770 aa14.55□□□□□ -0.08
HDAC6-230ENST00000488543 R3HDM1Q15032 1099 aaKnown RBP14.55□□□□□ -0.08
HDAC6-230ENST00000488543 CIZ1Q9ULV3 898 aaPredicted RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms