RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 KLHDC4Q8TBB5 520 aa18.76■□□□□ 0.59
TRIM54-204ENST00000488321 MEIS3Q99687 375 aa18.76■□□□□ 0.59
TRIM54-204ENST00000488321 LRRFIP2Q9Y608 721 aaKnown RBP18.76■□□□□ 0.59
TRIM54-204ENST00000488321 SCN4AP35499 1836 aa18.76■□□□□ 0.59
TRIM54-204ENST00000488321 RBM26Q5T8P6 1007 aaKnown RBP18.75■□□□□ 0.59
TRIM54-204ENST00000488321 RSBN1LQ6PCB5 846 aaPredicted RBP18.75■□□□□ 0.59
TRIM54-204ENST00000488321 TRPM4Q8TD43 1214 aa18.75■□□□□ 0.59
TRIM54-204ENST00000488321 CEP350Q5VT06 3117 aa18.75■□□□□ 0.59
TRIM54-204ENST00000488321 MROH5Q6ZUA9 1318 aa18.74■□□□□ 0.59
TRIM54-204ENST00000488321 TBC1D10BQ4KMP7 808 aaPredicted RBP18.74■□□□□ 0.59
TRIM54-204ENST00000488321 LRRC24Q50LG9 513 aa18.74■□□□□ 0.59
TRIM54-204ENST00000488321 METTL24Q5JXM2 366 aa18.74■□□□□ 0.59
TRIM54-204ENST00000488321 SAMD7Q7Z3H4 446 aa18.74■□□□□ 0.59
TRIM54-204ENST00000488321 ITGBL1O95965 494 aaPredicted RBP18.73■□□□□ 0.59
TRIM54-204ENST00000488321 GNAI3P08754 354 aa18.73■□□□□ 0.59
TRIM54-204ENST00000488321 ZNF804AQ7Z570 1209 aa18.73■□□□□ 0.59
TRIM54-204ENST00000488321 FTSJ3Q8IY81 847 aaKnown RBP18.73■□□□□ 0.59
TRIM54-204ENST00000488321 AGBL3Q8NEM8 1001 aa18.73■□□□□ 0.59
TRIM54-204ENST00000488321 RIPOR2Q9Y4F9 1068 aa18.73■□□□□ 0.59
TRIM54-204ENST00000488321 PASKQ96RG2 1323 aa18.73■□□□□ 0.59
TRIM54-204ENST00000488321 SPEF2Q9C093 1822 aa18.72■□□□□ 0.59
TRIM54-204ENST00000488321 HIRAP54198 1017 aaPredicted RBP18.72■□□□□ 0.59
TRIM54-204ENST00000488321 MXD3Q9BW11 206 aa18.72■□□□□ 0.59
TRIM54-204ENST00000488321 CD209Q9NNX6 404 aa18.72■□□□□ 0.59
TRIM54-204ENST00000488321 GTF2IP78347 998 aa18.71■□□□□ 0.59
TRIM54-204ENST00000488321 UBE4AQ14139 1066 aa18.71■□□□□ 0.59
TRIM54-204ENST00000488321 DACT2Q5SW24 774 aa18.71■□□□□ 0.59
TRIM54-204ENST00000488321 STRIP1Q5VSL9 837 aa18.71■□□□□ 0.59
TRIM54-204ENST00000488321 TTLL5Q6EMB2 1281 aa18.71■□□□□ 0.59
TRIM54-204ENST00000488321 C15orf52Q6ZUT6 534 aaKnown RBP18.71■□□□□ 0.59
TRIM54-204ENST00000488321 TMEM57Q8N5G2 664 aa18.71■□□□□ 0.59
TRIM54-204ENST00000488321 EGFRP00533 1210 aa18.7■□□□□ 0.58
TRIM54-204ENST00000488321 USP17L8P0C7I0 530 aa18.7■□□□□ 0.58
TRIM54-204ENST00000488321 RFX5P48382 616 aaPredicted RBP18.7■□□□□ 0.58
TRIM54-204ENST00000488321 PTPN12Q05209 780 aaKnown RBP18.7■□□□□ 0.58
TRIM54-204ENST00000488321 KIF4BQ2VIQ3 1234 aa18.7■□□□□ 0.58
TRIM54-204ENST00000488321 ZC3H15Q8WU90 426 aaKnown RBP18.7■□□□□ 0.58
TRIM54-204ENST00000488321 SIL1Q9H173 461 aa18.7■□□□□ 0.58
TRIM54-204ENST00000488321 IRS2Q9Y4H2 1338 aa18.7■□□□□ 0.58
TRIM54-204ENST00000488321 EYA2O00167 538 aa18.69■□□□□ 0.58
TRIM54-204ENST00000488321 DZIP1LQ8IYY4 767 aaKnown RBP18.69■□□□□ 0.58
TRIM54-204ENST00000488321 DNAJC5GQ8N7S2 189 aa18.69■□□□□ 0.58
TRIM54-204ENST00000488321 CREBZFQ9NS37 354 aa18.69■□□□□ 0.58
TRIM54-204ENST00000488321 MYO3BQ8WXR4 1341 aa18.69■□□□□ 0.58
TRIM54-204ENST00000488321 ADAMTSL1Q8N6G6 1762 aa18.68■□□□□ 0.58
TRIM54-204ENST00000488321 TMEM88BA6NKF7 163 aa18.68■□□□□ 0.58
TRIM54-204ENST00000488321 TRAF5O00463 557 aa18.68■□□□□ 0.58
TRIM54-204ENST00000488321 PDE8BO95263 885 aa18.68■□□□□ 0.58
TRIM54-204ENST00000488321 GNAI2P04899 355 aa18.68■□□□□ 0.58
TRIM54-204ENST00000488321 HIBADHP31937 336 aaKnown RBP18.68■□□□□ 0.58
TRIM54-204ENST00000488321 GYG1P46976 350 aa18.68■□□□□ 0.58
TRIM54-204ENST00000488321 FMR1Q06787 632 aaKnown RBP eCLIP18.68■□□□□ 0.58
TRIM54-204ENST00000488321 OGFOD1Q8N543 542 aa18.68■□□□□ 0.58
TRIM54-204ENST00000488321 GMLQ99445 158 aa18.68■□□□□ 0.58
TRIM54-204ENST00000488321 GLIS2Q9BZE0 524 aaPredicted RBP18.68■□□□□ 0.58
TRIM54-204ENST00000488321 IL1R1P14778 569 aa18.67■□□□□ 0.58
TRIM54-204ENST00000488321 ZNF280AP59817 542 aaPredicted RBP18.67■□□□□ 0.58
TRIM54-204ENST00000488321 CDC37L1Q7L3B6 337 aa18.67■□□□□ 0.58
TRIM54-204ENST00000488321 VPS37DQ86XT2 251 aa18.67■□□□□ 0.58
TRIM54-204ENST00000488321 ITPRIPQ8IWB1 547 aa18.67■□□□□ 0.58
TRIM54-204ENST00000488321 KLRG1Q96E93 195 aa18.67■□□□□ 0.58
TRIM54-204ENST00000488321 MYOZ2Q9NPC6 264 aa18.67■□□□□ 0.58
TRIM54-204ENST00000488321 PGAP2Q9UHJ9 254 aa18.67■□□□□ 0.58
TRIM54-204ENST00000488321 JAG2Q9Y219 1238 aa18.67■□□□□ 0.58
TRIM54-204ENST00000488321 ZNF609O15014 1411 aa18.66■□□□□ 0.58
TRIM54-204ENST00000488321 SRGAP3O43295 1099 aa18.66■□□□□ 0.58
TRIM54-204ENST00000488321 KIAA0825Q8IV33 1275 aa18.66■□□□□ 0.58
TRIM54-204ENST00000488321 VGLL2Q8N8G2 317 aa18.66■□□□□ 0.58
TRIM54-204ENST00000488321 DCPSQ96C86 337 aaKnown RBP18.66■□□□□ 0.58
TRIM54-204ENST00000488321 PA2G4Q9UQ80 394 aaKnown RBP18.66■□□□□ 0.58
TRIM54-204ENST00000488321 PUM3Q15397 648 aaKnown RBP18.65■□□□□ 0.58
TRIM54-204ENST00000488321 CAVIN4Q5BKX8 364 aa18.65■□□□□ 0.58
TRIM54-204ENST00000488321 USP48Q86UV5 1035 aa18.65■□□□□ 0.58
TRIM54-204ENST00000488321 FAM84BQ96KN1 310 aaPredicted RBP18.65■□□□□ 0.58
TRIM54-204ENST00000488321 MKRN1Q9UHC7 482 aaKnown RBP18.65■□□□□ 0.58
TRIM54-204ENST00000488321 FRAT2O75474 233 aaPredicted RBP18.64■□□□□ 0.57
TRIM54-204ENST00000488321 CIAO1O76071 339 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 IFIT1P09914 478 aaKnown RBP18.64■□□□□ 0.57
TRIM54-204ENST00000488321 RLBP1P12271 317 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 SCARF1Q14162 830 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 ATG9AQ7Z3C6 839 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 KRT26Q7Z3Y9 468 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 ZNF408Q9H9D4 720 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 GGA3Q9NZ52 723 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 CEP126Q9P2H0 1117 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 FBXO3Q9UK99 471 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 RCAN3Q9UKA8 241 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 HDAC9Q9UKV0 1011 aa18.64■□□□□ 0.57
TRIM54-204ENST00000488321 ABT1Q9ULW3 272 aaKnown RBP18.64■□□□□ 0.57
TRIM54-204ENST00000488321 ASTN2O75129 1339 aaPredicted RBP18.64■□□□□ 0.57
TRIM54-204ENST00000488321 SCN9AQ15858 1988 aa18.63■□□□□ 0.57
TRIM54-204ENST00000488321 F8W031 263 aaPredicted RBP18.63■□□□□ 0.57
TRIM54-204ENST00000488321 SASH1O94885 1247 aa18.63■□□□□ 0.57
TRIM54-204ENST00000488321 IL15P40933 162 aaPredicted RBP18.63■□□□□ 0.57
TRIM54-204ENST00000488321 TDRD7Q8NHU6 1098 aaKnown RBP18.63■□□□□ 0.57
TRIM54-204ENST00000488321 PANK1Q8TE04 598 aa18.63■□□□□ 0.57
TRIM54-204ENST00000488321 COPRSQ9NQ92 184 aa18.63■□□□□ 0.57
TRIM54-204ENST00000488321 IQSEC3Q9UPP2 1182 aaPredicted RBP18.63■□□□□ 0.57
TRIM54-204ENST00000488321 CELF2O95319 508 aaKnown RBP18.62■□□□□ 0.57
TRIM54-204ENST00000488321 SLC5A1P13866 664 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms