RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 DUOXA2Q1HG44 320 aa7.9□□□□□ -1.14
SMC4-220ENST00000488017 COL13A1Q5TAT6 717 aaPredicted RBP7.9□□□□□ -1.14
SMC4-220ENST00000488017 C16orf46Q6P387 395 aa7.9□□□□□ -1.14
SMC4-220ENST00000488017 CBLL1Q75N03 491 aa7.9□□□□□ -1.14
SMC4-220ENST00000488017 FAM83CQ9BQN1 747 aa7.9□□□□□ -1.14
SMC4-220ENST00000488017 LACRTQ9GZZ8 138 aa7.9□□□□□ -1.14
SMC4-220ENST00000488017 FNDC3AQ9Y2H6 1198 aaKnown RBP7.9□□□□□ -1.14
SMC4-220ENST00000488017 KIF4AO95239 1232 aa7.89□□□□□ -1.15
SMC4-220ENST00000488017 TTC39BQ5VTQ0 682 aaPredicted RBP7.89□□□□□ -1.15
SMC4-220ENST00000488017 TXNDC11Q6PKC3 985 aa7.89□□□□□ -1.15
SMC4-220ENST00000488017 FAM20CQ8IXL6 584 aa7.89□□□□□ -1.15
SMC4-220ENST00000488017 ACIN1Q9UKV3 1341 aaKnown RBP7.88□□□□□ -1.15
SMC4-220ENST00000488017 A6NJR5 290 aa7.88□□□□□ -1.15
SMC4-220ENST00000488017 SCNN1AP37088 669 aa7.88□□□□□ -1.15
SMC4-220ENST00000488017 FAM177BA6PVY3 158 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 ITGB5P18084 799 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 PTPRAP18433 802 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 RFX1P22670 979 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 CFAP70Q5T0N1 1121 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 ANKRD34AQ69YU3 496 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.87□□□□□ -1.15
SMC4-220ENST00000488017 SHKBP1Q8TBC3 707 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 CCER1Q8TC90 406 aaPredicted RBP7.87□□□□□ -1.15
SMC4-220ENST00000488017 FOXD4L4Q8WXT5 416 aaPredicted RBP7.87□□□□□ -1.15
SMC4-220ENST00000488017 WNT8BQ93098 351 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 PRIMPOLQ96LW4 560 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 CARD10Q9BWT7 1032 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 PBX4Q9BYU1 374 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 ADAM19Q9H013 955 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 SAP130Q9H0E3 1048 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 RASSF4Q9H2L5 321 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 SEC31BQ9NQW1 1179 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 NOVA2Q9UNW9 492 aaKnown RBP7.87□□□□□ -1.15
SMC4-220ENST00000488017 HIF3AQ9Y2N7 669 aa7.87□□□□□ -1.15
SMC4-220ENST00000488017 SART1O43290 800 aaKnown RBP7.86□□□□□ -1.15
SMC4-220ENST00000488017 OCLNQ16625 522 aa7.86□□□□□ -1.15
SMC4-220ENST00000488017 TNFRSF10BO14763 440 aa7.85□□□□□ -1.15
SMC4-220ENST00000488017 JUNBP17275 347 aaPredicted RBP7.85□□□□□ -1.15
SMC4-220ENST00000488017 EPHA1P21709 976 aa7.85□□□□□ -1.15
SMC4-220ENST00000488017 FAM26DQ5JW98 314 aa7.85□□□□□ -1.15
SMC4-220ENST00000488017 CEP120Q8N960 986 aa7.85□□□□□ -1.15
SMC4-220ENST00000488017 UBASH3BQ8TF42 649 aa7.85□□□□□ -1.15
SMC4-220ENST00000488017 ABI2Q9NYB9 513 aaPredicted RBP7.85□□□□□ -1.15
SMC4-220ENST00000488017 PRMT3O60678 531 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 ADAM11O75078 769 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 BMP3P12645 472 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 CDC25BP30305 580 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 HOXA10P31260 410 aaPredicted RBP7.84□□□□□ -1.15
SMC4-220ENST00000488017 ZAP70P43403 619 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 PIP4K2BP78356 416 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 ADAMTSL4Q6UY14 1074 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 SPOCD1Q6ZMY3 1216 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 BEND4Q6ZU67 534 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 KLHDC7BQ96G42 594 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 RNF208Q9H0X6 261 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 OSGEPQ9NPF4 335 aa7.84□□□□□ -1.15
SMC4-220ENST00000488017 SH2B1Q9NRF2 756 aaPredicted RBP7.84□□□□□ -1.15
SMC4-220ENST00000488017 ANGEL1Q9UNK9 670 aaKnown RBP7.84□□□□□ -1.15
SMC4-220ENST00000488017 H3BRJ5 948 aa7.83□□□□□ -1.16
SMC4-220ENST00000488017 DDX3YO15523 660 aaKnown RBP7.83□□□□□ -1.16
SMC4-220ENST00000488017 CABP4P57796 275 aa7.83□□□□□ -1.16
SMC4-220ENST00000488017 ELOAQ14241 798 aaKnown RBP7.83□□□□□ -1.16
SMC4-220ENST00000488017 NCAPG2Q86XI2 1143 aa7.83□□□□□ -1.16
SMC4-220ENST00000488017 KCNF1Q9H3M0 494 aa7.83□□□□□ -1.16
SMC4-220ENST00000488017 KRTAP9-7A8MTY7 169 aa7.82□□□□□ -1.16
SMC4-220ENST00000488017 POP1Q99575 1024 aaKnown RBP7.82□□□□□ -1.16
SMC4-220ENST00000488017 DBX1A6NMT0 343 aa7.81□□□□□ -1.16
SMC4-220ENST00000488017 PREPP48147 710 aa7.81□□□□□ -1.16
SMC4-220ENST00000488017 FAM69CQ0P6D2 419 aa7.81□□□□□ -1.16
SMC4-220ENST00000488017 LCE5AQ5TCM9 118 aa7.81□□□□□ -1.16
SMC4-220ENST00000488017 PDE12Q6L8Q7 609 aaKnown RBP7.81□□□□□ -1.16
SMC4-220ENST00000488017 ABTB2Q8N961 1025 aa7.81□□□□□ -1.16
SMC4-220ENST00000488017 GIMAP7Q8NHV1 300 aa7.81□□□□□ -1.16
SMC4-220ENST00000488017 GPR152Q8TDT2 470 aa7.81□□□□□ -1.16
SMC4-220ENST00000488017 PIM2Q9P1W9 311 aa7.81□□□□□ -1.16
SMC4-220ENST00000488017 CCDC39Q9UFE4 941 aa7.81□□□□□ -1.16
SMC4-220ENST00000488017 MEGF11A6BM72 1044 aa7.8□□□□□ -1.16
SMC4-220ENST00000488017 WDR64B1ANS9 1081 aa7.8□□□□□ -1.16
SMC4-220ENST00000488017 PRNPP04156 253 aa7.8□□□□□ -1.16
SMC4-220ENST00000488017 CYP2E1P05181 493 aaPredicted RBP7.8□□□□□ -1.16
SMC4-220ENST00000488017 CPSF6Q16630 551 aaKnown RBP eCLIP7.8□□□□□ -1.16
SMC4-220ENST00000488017 CDCA8Q53HL2 280 aa7.8□□□□□ -1.16
SMC4-220ENST00000488017 FDX2Q6P4F2 183 aa7.8□□□□□ -1.16
SMC4-220ENST00000488017 FBXL18Q96ME1 805 aa7.8□□□□□ -1.16
SMC4-220ENST00000488017 RUSC1Q9BVN2 902 aa7.8□□□□□ -1.16
SMC4-220ENST00000488017 CXXC1Q9P0U4 656 aaPredicted RBP7.8□□□□□ -1.16
SMC4-220ENST00000488017 STIM2Q9P246 746 aa7.8□□□□□ -1.16
SMC4-220ENST00000488017 MSMPQ1L6U9 139 aa7.79□□□□□ -1.16
SMC4-220ENST00000488017 NFXL1Q6ZNB6 911 aa7.79□□□□□ -1.16
SMC4-220ENST00000488017 ZMYND15Q9H091 742 aa7.79□□□□□ -1.16
SMC4-220ENST00000488017 ZMIZ1Q9ULJ6 1067 aa7.79□□□□□ -1.16
SMC4-220ENST00000488017 GAS2O43903 313 aaKnown RBP7.78□□□□□ -1.16
SMC4-220ENST00000488017 ELP3Q9H9T3 547 aa7.78□□□□□ -1.16
SMC4-220ENST00000488017 ATG3Q9NT62 314 aa7.78□□□□□ -1.16
SMC4-220ENST00000488017 SALL4Q9UJQ4 1053 aa7.78□□□□□ -1.16
SMC4-220ENST00000488017 RPLP1P05386 114 aaKnown RBP7.77□□□□□ -1.17
SMC4-220ENST00000488017 MAP4P27816 1152 aaKnown RBP7.77□□□□□ -1.17
SMC4-220ENST00000488017 ARL4DP49703 201 aa7.77□□□□□ -1.17
SMC4-220ENST00000488017 COL19A1Q14993 1142 aa7.77□□□□□ -1.17
SMC4-220ENST00000488017 MFSD14AQ96MC6 490 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms