RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 DNAJC25Q9H1X3 360 aa21.12■□□□□ 0.97
VIM-206ENST00000487938 SPTLC3Q9NUV7 552 aa21.12■□□□□ 0.97
VIM-206ENST00000487938 CEP126Q9P2H0 1117 aa21.12■□□□□ 0.97
VIM-206ENST00000487938 ADORA1P30542 326 aa21.12■□□□□ 0.97
VIM-206ENST00000487938 GLIPR1L2Q4G1C9 344 aa21.12■□□□□ 0.97
VIM-206ENST00000487938 KIAA1524Q8TCG1 905 aa21.12■□□□□ 0.97
VIM-206ENST00000487938 WDR17Q8IZU2 1322 aa21.11■□□□□ 0.97
VIM-206ENST00000487938 GOLGA6L6A8MZA4 724 aa21.11■□□□□ 0.97
VIM-206ENST00000487938 PTGS1P23219 599 aa21.11■□□□□ 0.97
VIM-206ENST00000487938 PDIA3P30101 505 aaKnown RBP21.11■□□□□ 0.97
VIM-206ENST00000487938 CCDC57Q2TAC2 916 aa21.11■□□□□ 0.97
VIM-206ENST00000487938 GORABQ5T7V8 394 aa21.11■□□□□ 0.97
VIM-206ENST00000487938 GPHNQ9NQX3 736 aaPredicted RBP21.11■□□□□ 0.97
VIM-206ENST00000487938 XIRP1Q702N8 1843 aaKnown RBP21.1■□□□□ 0.97
VIM-206ENST00000487938 ZNF165P49910 485 aa21.1■□□□□ 0.97
VIM-206ENST00000487938 NAA16Q6N069 864 aaPredicted RBP21.1■□□□□ 0.97
VIM-206ENST00000487938 CCAR1Q8IX12 1150 aaKnown RBP21.1■□□□□ 0.97
VIM-206ENST00000487938 DRC7Q8IY82 874 aa21.1■□□□□ 0.97
VIM-206ENST00000487938 MYRIPQ8NFW9 859 aa21.1■□□□□ 0.97
VIM-206ENST00000487938 TSC1Q92574 1164 aa21.1■□□□□ 0.97
VIM-206ENST00000487938 AGXT2Q9BYV1 514 aa21.1■□□□□ 0.97
VIM-206ENST00000487938 CIAO1O76071 339 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 HAND2P61296 217 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 WASHC4Q2M389 1173 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 TRIM5Q9C035 493 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 NRBP1Q9UHY1 535 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 TPM3P06753 285 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 HMGN5P82970 282 aaKnown RBP21.09■□□□□ 0.97
VIM-206ENST00000487938 HSP90AB3PQ58FF7 597 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 TTC39AQ5SRH9 613 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 FAM89AQ96GI7 184 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 USP28Q96RU2 1077 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 STRN4Q9NRL3 753 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 SLAIN2Q9P270 581 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 RCOR1Q9UKL0 485 aa21.09■□□□□ 0.97
VIM-206ENST00000487938 TJP1Q07157 1748 aa21.08■□□□□ 0.97
VIM-206ENST00000487938 CCDC158Q5M9N0 1113 aa21.08■□□□□ 0.97
VIM-206ENST00000487938 CCDC186Q7Z3E2 898 aa21.08■□□□□ 0.97
VIM-206ENST00000487938 XAGE2Q96GT9 111 aa21.08■□□□□ 0.97
VIM-206ENST00000487938 ATG3Q9NT62 314 aa21.08■□□□□ 0.97
VIM-206ENST00000487938 GOLPH3LQ9H4A5 285 aa21.08■□□□□ 0.96
VIM-206ENST00000487938 NUP188Q5SRE5 1749 aa21.08■□□□□ 0.96
VIM-206ENST00000487938 SOS2Q07890 1332 aaPredicted RBP21.08■□□□□ 0.96
VIM-206ENST00000487938 IL2RBP14784 551 aa21.07■□□□□ 0.96
VIM-206ENST00000487938 TCIRG1Q13488 830 aa21.07■□□□□ 0.96
VIM-206ENST00000487938 SCARF1Q14162 830 aa21.07■□□□□ 0.96
VIM-206ENST00000487938 ISCA1Q9BUE6 129 aa21.07■□□□□ 0.96
VIM-206ENST00000487938 KCPQ6ZWJ8 1503 aa21.07■□□□□ 0.96
VIM-206ENST00000487938 ZNF75DP51815 510 aa21.07■□□□□ 0.96
VIM-206ENST00000487938 NKX1-1Q15270 411 aaPredicted RBP21.07■□□□□ 0.96
VIM-206ENST00000487938 ZNF274Q96GC6 653 aaPredicted RBP21.07■□□□□ 0.96
VIM-206ENST00000487938 PRIMPOLQ96LW4 560 aa21.07■□□□□ 0.96
VIM-206ENST00000487938 SYNE4Q8N205 404 aa21.06■□□□□ 0.96
VIM-206ENST00000487938 TDRD7Q8NHU6 1098 aaKnown RBP21.06■□□□□ 0.96
VIM-206ENST00000487938 ARID3AQ99856 593 aa21.06■□□□□ 0.96
VIM-206ENST00000487938 KIF3AQ9Y496 699 aa21.06■□□□□ 0.96
VIM-206ENST00000487938 SALL1Q9NSC2 1324 aa21.06■□□□□ 0.96
VIM-206ENST00000487938 A0A087WWV3 80 aa21.06■□□□□ 0.96
VIM-206ENST00000487938 FAM177BA6PVY3 158 aa21.06■□□□□ 0.96
VIM-206ENST00000487938 TAF7LQ5H9L4 462 aa21.06■□□□□ 0.96
VIM-206ENST00000487938 OTUD7BQ6GQQ9 843 aa21.06■□□□□ 0.96
VIM-206ENST00000487938 PI16Q6UXB8 463 aa21.06■□□□□ 0.96
VIM-206ENST00000487938 ILDR1Q86SU0 546 aaPredicted RBP21.06■□□□□ 0.96
VIM-206ENST00000487938 FOXP2O15409 715 aa21.05■□□□□ 0.96
VIM-206ENST00000487938 FDPSP14324 419 aaKnown RBP21.05■□□□□ 0.96
VIM-206ENST00000487938 ZAP70P43403 619 aa21.05■□□□□ 0.96
VIM-206ENST00000487938 LRMPQ12912 555 aa21.05■□□□□ 0.96
VIM-206ENST00000487938 PLA2G4DQ86XP0 818 aa21.05■□□□□ 0.96
VIM-206ENST00000487938 FGAP02671 866 aa21.04■□□□□ 0.96
VIM-206ENST00000487938 C11orf57Q6ZUT1 292 aaPredicted RBP21.04■□□□□ 0.96
VIM-206ENST00000487938 RAB11FIP4Q86YS3 637 aa21.04■□□□□ 0.96
VIM-206ENST00000487938 PARP4Q9UKK3 1724 aaKnown RBP21.04■□□□□ 0.96
VIM-206ENST00000487938 ZNF335Q9H4Z2 1342 aaPredicted RBP21.04■□□□□ 0.96
VIM-206ENST00000487938 SNW1Q13573 536 aaKnown RBP21.04■□□□□ 0.96
VIM-206ENST00000487938 VSIG10Q8N0Z9 540 aa21.04■□□□□ 0.96
VIM-206ENST00000487938 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.04■□□□□ 0.96
VIM-206ENST00000487938 ZNF396Q96N95 335 aaPredicted RBP21.04■□□□□ 0.96
VIM-206ENST00000487938 PUS7LQ9H0K6 701 aaKnown RBP21.04■□□□□ 0.96
VIM-206ENST00000487938 AKAP2Q9Y2D5 859 aa21.04■□□□□ 0.96
VIM-206ENST00000487938 ME1P48163 572 aa21.03■□□□□ 0.96
VIM-206ENST00000487938 TICAM2Q86XR7 235 aa21.03■□□□□ 0.96
VIM-206ENST00000487938 CARMIL3Q8ND23 1372 aa21.03■□□□□ 0.96
VIM-206ENST00000487938 UBR2Q8IWV8 1755 aa21.03■□□□□ 0.96
VIM-206ENST00000487938 IMMTQ16891 758 aaKnown RBP21.03■□□□□ 0.96
VIM-206ENST00000487938 ERCC4Q92889 916 aaPredicted RBP21.03■□□□□ 0.96
VIM-206ENST00000487938 EVA1CP58658 441 aa21.02■□□□□ 0.96
VIM-206ENST00000487938 CCDC73Q6ZRK6 1079 aa21.02■□□□□ 0.96
VIM-206ENST00000487938 DNAJC10Q8IXB1 793 aa21.02■□□□□ 0.96
VIM-206ENST00000487938 MAP7D2Q96T17 732 aa21.02■□□□□ 0.96
VIM-206ENST00000487938 CTNNA3Q9UI47 895 aa21.02■□□□□ 0.96
VIM-206ENST00000487938 ASAP1Q9ULH1 1129 aa21.02■□□□□ 0.96
VIM-206ENST00000487938 COL5A2P05997 1499 aaPredicted RBP21.02■□□□□ 0.96
VIM-206ENST00000487938 FSIP1Q8NA03 581 aa21.02■□□□□ 0.95
VIM-206ENST00000487938 CARD10Q9BWT7 1032 aa21.02■□□□□ 0.95
VIM-206ENST00000487938 TMOD3Q9NYL9 352 aa21.02■□□□□ 0.95
VIM-206ENST00000487938 PRC1O43663 620 aa21.01■□□□□ 0.95
VIM-206ENST00000487938 IFIT5Q13325 482 aaKnown RBP21.01■□□□□ 0.95
VIM-206ENST00000487938 IQCB1Q15051 598 aa21.01■□□□□ 0.95
VIM-206ENST00000487938 FBXW7Q969H0 707 aa21.01■□□□□ 0.95
VIM-206ENST00000487938 STRCQ7RTU9 1775 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms