RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 VAMP4O75379 141 aa24.6■■□□□ 1.53
COL27A1-205ENST00000485397 IGHMBP2P38935 993 aaKnown RBP24.6■■□□□ 1.53
COL27A1-205ENST00000485397 CDCA5Q96FF9 252 aa24.6■■□□□ 1.53
COL27A1-205ENST00000485397 MXD3Q9BW11 206 aa24.6■■□□□ 1.53
COL27A1-205ENST00000485397 MYOZ2Q9NPC6 264 aa24.6■■□□□ 1.53
COL27A1-205ENST00000485397 MYH3P11055 1940 aa24.59■■□□□ 1.53
COL27A1-205ENST00000485397 ITGA6P23229 1130 aa24.59■■□□□ 1.53
COL27A1-205ENST00000485397 EXOSC9Q06265 439 aaKnown RBP24.59■■□□□ 1.53
COL27A1-205ENST00000485397 FAM161AQ3B820 660 aa24.59■■□□□ 1.53
COL27A1-205ENST00000485397 TXNRD3Q86VQ6 643 aa24.59■■□□□ 1.53
COL27A1-205ENST00000485397 PSME4Q14997 1843 aa24.58■■□□□ 1.53
COL27A1-205ENST00000485397 SPEF2Q9C093 1822 aa24.58■■□□□ 1.53
COL27A1-205ENST00000485397 ANP32CO43423 234 aa24.58■■□□□ 1.53
COL27A1-205ENST00000485397 WDR63Q8IWG1 891 aa24.58■■□□□ 1.53
COL27A1-205ENST00000485397 CSF1RP07333 972 aa24.57■■□□□ 1.52
COL27A1-205ENST00000485397 ZNF157P51786 506 aaPredicted RBP24.57■■□□□ 1.52
COL27A1-205ENST00000485397 DACT2Q5SW24 774 aa24.57■■□□□ 1.52
COL27A1-205ENST00000485397 LINS1Q8NG48 757 aa24.57■■□□□ 1.52
COL27A1-205ENST00000485397 FBXW7Q969H0 707 aa24.57■■□□□ 1.52
COL27A1-205ENST00000485397 CCDC102AQ96A19 550 aa24.57■■□□□ 1.52
COL27A1-205ENST00000485397 MYH16Q9H6N6 1097 aa24.57■■□□□ 1.52
COL27A1-205ENST00000485397 SCAF8Q9UPN6 1271 aaKnown RBP24.57■■□□□ 1.52
COL27A1-205ENST00000485397 LEMD3Q9Y2U8 911 aa24.57■■□□□ 1.52
COL27A1-205ENST00000485397 KLRK1P26718 216 aa24.56■■□□□ 1.52
COL27A1-205ENST00000485397 KIF23Q02241 960 aaPredicted RBP24.56■■□□□ 1.52
COL27A1-205ENST00000485397 COA1Q9GZY4 146 aa24.56■■□□□ 1.52
COL27A1-205ENST00000485397 MPHOSPH8Q99549 860 aa24.55■■□□□ 1.52
COL27A1-205ENST00000485397 SPINK5Q9NQ38 1064 aaPredicted RBP24.55■■□□□ 1.52
COL27A1-205ENST00000485397 ZNF804BA4D1E1 1349 aa24.55■■□□□ 1.52
COL27A1-205ENST00000485397 NBPF9Q3BBW0 867 aa24.54■■□□□ 1.52
COL27A1-205ENST00000485397 ANKRD2Q9GZV1 360 aa24.54■■□□□ 1.52
COL27A1-205ENST00000485397 CASP8AP2Q9UKL3 1982 aa24.53■■□□□ 1.52
COL27A1-205ENST00000485397 ZNF316A6NFI3 1004 aaPredicted RBP24.53■■□□□ 1.52
COL27A1-205ENST00000485397 F6X3S4 739 aa24.53■■□□□ 1.52
COL27A1-205ENST00000485397 STRIP1Q5VSL9 837 aa24.53■■□□□ 1.52
COL27A1-205ENST00000485397 PITPNM2Q9BZ72 1349 aa24.53■■□□□ 1.52
COL27A1-205ENST00000485397 CCDC85CA6NKD9 419 aa24.52■■□□□ 1.52
COL27A1-205ENST00000485397 SLC10A3P09131 477 aa24.52■■□□□ 1.52
COL27A1-205ENST00000485397 PRAMEF18Q5VWM3 479 aa24.52■■□□□ 1.52
COL27A1-205ENST00000485397 MCOLN1Q9GZU1 580 aa24.52■■□□□ 1.52
COL27A1-205ENST00000485397 ZEB1P37275 1124 aaPredicted RBP24.51■■□□□ 1.51
COL27A1-205ENST00000485397 CHRNDQ07001 517 aa24.51■■□□□ 1.51
COL27A1-205ENST00000485397 ANKRD18BA2A2Z9 1011 aa24.5■■□□□ 1.51
COL27A1-205ENST00000485397 SNAP23O00161 211 aa24.5■■□□□ 1.51
COL27A1-205ENST00000485397 FOXO4P98177 505 aa24.5■■□□□ 1.51
COL27A1-205ENST00000485397 BEND3Q5T5X7 828 aa24.5■■□□□ 1.51
COL27A1-205ENST00000485397 TTLL5Q6EMB2 1281 aa24.5■■□□□ 1.51
COL27A1-205ENST00000485397 MOB2Q70IA6 237 aa24.5■■□□□ 1.51
COL27A1-205ENST00000485397 OGFOD1Q8N543 542 aa24.5■■□□□ 1.51
COL27A1-205ENST00000485397 MYO3BQ8WXR4 1341 aa24.5■■□□□ 1.51
COL27A1-205ENST00000485397 WNT10BO00744 389 aa24.49■■□□□ 1.51
COL27A1-205ENST00000485397 KCNJ4P48050 445 aa24.49■■□□□ 1.51
COL27A1-205ENST00000485397 RASAL3Q86YV0 1011 aa24.49■■□□□ 1.51
COL27A1-205ENST00000485397 CSRNP1Q96S65 589 aa24.49■■□□□ 1.51
COL27A1-205ENST00000485397 ZNF646O15015 1829 aaPredicted RBP24.49■■□□□ 1.51
COL27A1-205ENST00000485397 CACNA1FO60840 1977 aa24.48■■□□□ 1.51
COL27A1-205ENST00000485397 TAF5LO75529 589 aa24.48■■□□□ 1.51
COL27A1-205ENST00000485397 FKBP1BP68106 108 aa24.48■■□□□ 1.51
COL27A1-205ENST00000485397 GTF2IP78347 998 aa24.48■■□□□ 1.51
COL27A1-205ENST00000485397 DGKZQ13574 1117 aa24.48■■□□□ 1.51
COL27A1-205ENST00000485397 HELBQ8NG08 1087 aaPredicted RBP24.48■■□□□ 1.51
COL27A1-205ENST00000485397 RNF186Q9NXI6 227 aa24.48■■□□□ 1.51
COL27A1-205ENST00000485397 CHMP3Q9Y3E7 222 aa24.48■■□□□ 1.51
COL27A1-205ENST00000485397 TRPA1O75762 1119 aa24.47■■□□□ 1.51
COL27A1-205ENST00000485397 SASH1O94885 1247 aa24.47■■□□□ 1.51
COL27A1-205ENST00000485397 IFIT5Q13325 482 aaKnown RBP24.47■■□□□ 1.51
COL27A1-205ENST00000485397 KIAA0825Q8IV33 1275 aa24.47■■□□□ 1.51
COL27A1-205ENST00000485397 FAM9BQ8IZU0 186 aa24.47■■□□□ 1.51
COL27A1-205ENST00000485397 CD209Q9NNX6 404 aa24.47■■□□□ 1.51
COL27A1-205ENST00000485397 SAGE1Q9NXZ1 904 aa24.47■■□□□ 1.51
COL27A1-205ENST00000485397 UBE2Q2LH0YL09 131 aa24.46■■□□□ 1.51
COL27A1-205ENST00000485397 EPHA10Q5JZY3 1008 aa24.46■■□□□ 1.51
COL27A1-205ENST00000485397 PAPPA2Q9BXP8 1791 aa24.45■■□□□ 1.5
COL27A1-205ENST00000485397 IRS2Q9Y4H2 1338 aa24.45■■□□□ 1.5
COL27A1-205ENST00000485397 LMBR1LQ6UX01 489 aa24.45■■□□□ 1.5
COL27A1-205ENST00000485397 HDAC9Q9UKV0 1011 aa24.44■■□□□ 1.5
COL27A1-205ENST00000485397 TTLL12Q14166 644 aaPredicted RBP24.43■■□□□ 1.5
COL27A1-205ENST00000485397 ZNF594Q96JF6 807 aaPredicted RBP24.43■■□□□ 1.5
COL27A1-205ENST00000485397 GRM8O00222 908 aa24.42■■□□□ 1.5
COL27A1-205ENST00000485397 MMP14P50281 582 aa24.42■■□□□ 1.5
COL27A1-205ENST00000485397 C15orf52Q6ZUT6 534 aaKnown RBP24.42■■□□□ 1.5
COL27A1-205ENST00000485397 CERS5Q8N5B7 392 aa24.42■■□□□ 1.5
COL27A1-205ENST00000485397 ZBED3Q96IU2 234 aaPredicted RBP24.42■■□□□ 1.5
COL27A1-205ENST00000485397 PLIN1O60240 522 aa24.4■■□□□ 1.5
COL27A1-205ENST00000485397 CCDC57Q2TAC2 916 aa24.4■■□□□ 1.5
COL27A1-205ENST00000485397 SLC4A10Q6U841 1118 aa24.4■■□□□ 1.5
COL27A1-205ENST00000485397 REM2Q8IYK8 340 aaPredicted RBP24.4■■□□□ 1.5
COL27A1-205ENST00000485397 C9orf78Q9NZ63 289 aaPredicted RBP24.4■■□□□ 1.5
COL27A1-205ENST00000485397 NF2P35240 595 aa24.39■■□□□ 1.49
COL27A1-205ENST00000485397 PRKG1Q13976 671 aa24.39■■□□□ 1.49
COL27A1-205ENST00000485397 TAF7LQ5H9L4 462 aa24.39■■□□□ 1.49
COL27A1-205ENST00000485397 LDHAL6AQ6ZMR3 332 aa24.39■■□□□ 1.49
COL27A1-205ENST00000485397 APOBEC3FQ8IUX4 373 aaKnown RBP24.39■■□□□ 1.49
COL27A1-205ENST00000485397 AKAP11Q9UKA4 1901 aa24.39■■□□□ 1.49
COL27A1-205ENST00000485397 ALDH1L1O75891 902 aa24.38■■□□□ 1.49
COL27A1-205ENST00000485397 IL1R1P14778 569 aa24.38■■□□□ 1.49
COL27A1-205ENST00000485397 RGS19P49795 217 aa24.38■■□□□ 1.49
COL27A1-205ENST00000485397 SRCIN1Q9C0H9 1055 aa24.38■■□□□ 1.49
COL27A1-205ENST00000485397 CNNM1Q9NRU3 951 aa24.38■■□□□ 1.49
COL27A1-205ENST00000485397 JAG2Q9Y219 1238 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms