RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 F8W735 103 aaPredicted RBP6.89□□□□□ -1.31
VPS50-217ENST00000485140 H3BRJ5 948 aa6.89□□□□□ -1.31
VPS50-217ENST00000485140 ZBTB39O15060 712 aa6.89□□□□□ -1.31
VPS50-217ENST00000485140 PHACTR2O75167 634 aa6.89□□□□□ -1.31
VPS50-217ENST00000485140 NOS3P29474 1203 aa6.89□□□□□ -1.31
VPS50-217ENST00000485140 CD68P34810 354 aaPredicted RBP6.89□□□□□ -1.31
VPS50-217ENST00000485140 IREB2P48200 963 aaKnown RBP6.89□□□□□ -1.31
VPS50-217ENST00000485140 PDE3BQ13370 1112 aa6.89□□□□□ -1.31
VPS50-217ENST00000485140 DZIP1LQ8IYY4 767 aaKnown RBP6.89□□□□□ -1.31
VPS50-217ENST00000485140 CITED4Q96RK1 184 aa6.89□□□□□ -1.31
VPS50-217ENST00000485140 SEC31BQ9NQW1 1179 aa6.89□□□□□ -1.31
VPS50-217ENST00000485140 SALL4Q9UJQ4 1053 aa6.89□□□□□ -1.31
VPS50-217ENST00000485140 FAM26DQ5JW98 314 aa6.88□□□□□ -1.31
VPS50-217ENST00000485140 TMEM102Q8N9M5 508 aaPredicted RBP6.88□□□□□ -1.31
VPS50-217ENST00000485140 RASSF4Q9H2L5 321 aa6.88□□□□□ -1.31
VPS50-217ENST00000485140 PDE2AO00408 941 aaPredicted RBP6.87□□□□□ -1.31
VPS50-217ENST00000485140 FSCN2O14926 492 aa6.87□□□□□ -1.31
VPS50-217ENST00000485140 PRSS36Q5K4E3 855 aa6.87□□□□□ -1.31
VPS50-217ENST00000485140 HP1BP3Q5SSJ5 553 aaPredicted RBP6.87□□□□□ -1.31
VPS50-217ENST00000485140 ZFYVE1Q9HBF4 777 aa6.87□□□□□ -1.31
VPS50-217ENST00000485140 TMEM63CQ9P1W3 806 aa6.87□□□□□ -1.31
VPS50-217ENST00000485140 AMOTL2Q9Y2J4 779 aa6.87□□□□□ -1.31
VPS50-217ENST00000485140 SCO2A0A1W2PP80 73 aa6.86□□□□□ -1.31
VPS50-217ENST00000485140 LINC01387J3KSC0 135 aa6.86□□□□□ -1.31
VPS50-217ENST00000485140 NDUFB5O43674 189 aa6.86□□□□□ -1.31
VPS50-217ENST00000485140 HNRNPUQ00839 825 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS50-217ENST00000485140 ANKRD34AQ69YU3 496 aa6.86□□□□□ -1.31
VPS50-217ENST00000485140 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.86□□□□□ -1.31
VPS50-217ENST00000485140 ATCAYQ86WG3 371 aa6.86□□□□□ -1.31
VPS50-217ENST00000485140 LACRTQ9GZZ8 138 aa6.86□□□□□ -1.31
VPS50-217ENST00000485140 SOX17Q9H6I2 414 aaPredicted RBP6.86□□□□□ -1.31
VPS50-217ENST00000485140 DZANK1Q9NVP4 752 aa6.86□□□□□ -1.31
VPS50-217ENST00000485140 DHX15O43143 795 aaKnown RBP6.85□□□□□ -1.31
VPS50-217ENST00000485140 ABL1P00519 1130 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 GLB1P16278 677 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 ATP11AP98196 1134 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 DUOXA2Q1HG44 320 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 COL13A1Q5TAT6 717 aaPredicted RBP6.85□□□□□ -1.31
VPS50-217ENST00000485140 PRR23CQ6ZRP0 262 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 GLYCTKQ8IVS8 523 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 GJD3Q8N144 294 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 DDX54Q8TDD1 881 aaKnown RBP6.85□□□□□ -1.31
VPS50-217ENST00000485140 BSNDQ8WZ55 320 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 BRPF3Q9ULD4 1205 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 POLIQ9UNA4 740 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 HIF3AQ9Y2N7 669 aa6.85□□□□□ -1.31
VPS50-217ENST00000485140 ICMTO60725 284 aa6.84□□□□□ -1.31
VPS50-217ENST00000485140 TNFRSF21O75509 655 aa6.84□□□□□ -1.31
VPS50-217ENST00000485140 LRP8Q14114 963 aa6.84□□□□□ -1.31
VPS50-217ENST00000485140 C1orf127Q8N9H9 656 aa6.84□□□□□ -1.31
VPS50-217ENST00000485140 CCER1Q8TC90 406 aaPredicted RBP6.84□□□□□ -1.31
VPS50-217ENST00000485140 POP1Q99575 1024 aaKnown RBP6.84□□□□□ -1.31
VPS50-217ENST00000485140 KRTAP4-12Q9BQ66 201 aa6.84□□□□□ -1.31
VPS50-217ENST00000485140 RNF208Q9H0X6 261 aa6.84□□□□□ -1.31
VPS50-217ENST00000485140 GGNBP2Q9H3C7 697 aa6.84□□□□□ -1.31
VPS50-217ENST00000485140 C1orf115Q9H7X2 142 aa6.84□□□□□ -1.31
VPS50-217ENST00000485140 CNTN3Q9P232 1028 aa6.84□□□□□ -1.31
VPS50-217ENST00000485140 C19orf57Q0VDD7 668 aa6.83□□□□□ -1.32
VPS50-217ENST00000485140 ARTNQ5T4W7 220 aa6.83□□□□□ -1.32
VPS50-217ENST00000485140 LCE3BQ5TA77 95 aa6.83□□□□□ -1.32
VPS50-217ENST00000485140 ACAD11Q709F0 780 aa6.83□□□□□ -1.32
VPS50-217ENST00000485140 MEGF10Q96KG7 1140 aa6.83□□□□□ -1.32
VPS50-217ENST00000485140 BHLHE41Q9C0J9 482 aaPredicted RBP6.83□□□□□ -1.32
VPS50-217ENST00000485140 ZFP64Q9NPA5 681 aa6.83□□□□□ -1.32
VPS50-217ENST00000485140 KANSL3Q9P2N6 904 aa6.83□□□□□ -1.32
VPS50-217ENST00000485140 RNF112Q9ULX5 631 aa6.83□□□□□ -1.32
VPS50-217ENST00000485140 SART1O43290 800 aaKnown RBP6.82□□□□□ -1.32
VPS50-217ENST00000485140 FZD6O60353 706 aa6.82□□□□□ -1.32
VPS50-217ENST00000485140 CYP2E1P05181 493 aaPredicted RBP6.82□□□□□ -1.32
VPS50-217ENST00000485140 OSMRQ99650 979 aa6.82□□□□□ -1.32
VPS50-217ENST00000485140 CHRDQ9H2X0 955 aa6.82□□□□□ -1.32
VPS50-217ENST00000485140 RAXQ9Y2V3 346 aa6.82□□□□□ -1.32
VPS50-217ENST00000485140 MEGF11A6BM72 1044 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 EPHA1P21709 976 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 IKBKEQ14164 716 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 PHLDB3Q6NSJ2 640 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 NBPF11Q86T75 865 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 GIMAP7Q8NHV1 300 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 NXPE3Q969Y0 559 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 KRTAP9-9Q9BYP9 154 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 KRTAP9-4Q9BYQ2 154 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 STOML1Q9UBI4 398 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 SOX13Q9UN79 622 aa6.81□□□□□ -1.32
VPS50-217ENST00000485140 ITGB7P26010 798 aa6.8□□□□□ -1.32
VPS50-217ENST00000485140 FDX2Q6P4F2 183 aa6.8□□□□□ -1.32
VPS50-217ENST00000485140 GALNT11Q8NCW6 608 aa6.8□□□□□ -1.32
VPS50-217ENST00000485140 UTP4Q969X6 686 aaKnown RBP6.8□□□□□ -1.32
VPS50-217ENST00000485140 DNAJC25Q9H1X3 360 aa6.8□□□□□ -1.32
VPS50-217ENST00000485140 ZFYVE28Q9HCC9 887 aa6.8□□□□□ -1.32
VPS50-217ENST00000485140 H3BRB1 525 aa6.79□□□□□ -1.32
VPS50-217ENST00000485140 NFKBIEO00221 500 aa6.79□□□□□ -1.32
VPS50-217ENST00000485140 FSTP19883 344 aa6.79□□□□□ -1.32
VPS50-217ENST00000485140 GRIK1P39086 918 aa6.79□□□□□ -1.32
VPS50-217ENST00000485140 FOXD4L6Q3SYB3 417 aaPredicted RBP6.79□□□□□ -1.32
VPS50-217ENST00000485140 FOXD4L3Q6VB84 417 aaPredicted RBP6.79□□□□□ -1.32
VPS50-217ENST00000485140 MYRFLQ96LU7 910 aa6.79□□□□□ -1.32
VPS50-217ENST00000485140 DMRTB1Q96MA1 342 aa6.79□□□□□ -1.32
VPS50-217ENST00000485140 YIPF2Q9BWQ6 316 aa6.79□□□□□ -1.32
VPS50-217ENST00000485140 TUT1Q9H6E5 874 aaKnown RBP6.79□□□□□ -1.32
VPS50-217ENST00000485140 CYP4F12Q9HCS2 524 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms