RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ZNF446Q9NWS9 450 aa15.51■□□□□ 0.07
USP40-214ENST00000483519 KSR2Q6VAB6 950 aa15.5■□□□□ 0.07
USP40-214ENST00000483519 LTV1Q96GA3 475 aaPredicted RBP15.5■□□□□ 0.07
USP40-214ENST00000483519 LTN1O94822 1766 aa15.5■□□□□ 0.07
USP40-214ENST00000483519 ENGASEQ8NFI3 743 aa15.5■□□□□ 0.07
USP40-214ENST00000483519 PPP1R13BQ96KQ4 1090 aa15.5■□□□□ 0.07
USP40-214ENST00000483519 TLR7Q9NYK1 1049 aaKnown RBP15.5■□□□□ 0.07
USP40-214ENST00000483519 U3KPZ7 1027 aaPredicted RBP15.5■□□□□ 0.07
USP40-214ENST00000483519 SPATA31A6Q5VVP1 1343 aa15.49■□□□□ 0.07
USP40-214ENST00000483519 ERICH4A6NGS2 130 aa15.49■□□□□ 0.07
USP40-214ENST00000483519 ZRSR1Q15695 479 aaKnown RBP15.49■□□□□ 0.07
USP40-214ENST00000483519 FSIP1Q8NA03 581 aa15.49■□□□□ 0.07
USP40-214ENST00000483519 GRM8O00222 908 aa15.49■□□□□ 0.07
USP40-214ENST00000483519 SFPQP23246 707 aaKnown RBP eCLIP15.49■□□□□ 0.07
USP40-214ENST00000483519 TEFQ10587 303 aa15.49■□□□□ 0.07
USP40-214ENST00000483519 SCRN1Q12765 414 aa15.49■□□□□ 0.07
USP40-214ENST00000483519 ERCC6LQ2NKX8 1250 aa15.49■□□□□ 0.07
USP40-214ENST00000483519 E4F1Q66K89 784 aaPredicted RBP15.49■□□□□ 0.07
USP40-214ENST00000483519 NBPF11Q86T75 865 aa15.49■□□□□ 0.07
USP40-214ENST00000483519 ARGLU1Q9NWB6 273 aaPredicted RBP15.49■□□□□ 0.07
USP40-214ENST00000483519 ALS2Q96Q42 1657 aa15.49■□□□□ 0.07
USP40-214ENST00000483519 CCP110O43303 1012 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 PFKFB2O60825 505 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 ME1P48163 572 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 TPM4P67936 248 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 RFX7Q2KHR2 1363 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 BTBD11A6QL63 1104 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 NPHP1O15259 732 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 HMGB1P09429 215 aaKnown RBP15.48■□□□□ 0.07
USP40-214ENST00000483519 CWF19L2Q2TBE0 894 aaKnown RBP15.48■□□□□ 0.07
USP40-214ENST00000483519 CCDC93Q567U6 631 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 KCNH5Q8NCM2 988 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 SUCLG2Q96I99 432 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 USP28Q96RU2 1077 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 BPIFA3Q9BQP9 254 aa15.48■□□□□ 0.07
USP40-214ENST00000483519 UTYO14607 1347 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.47■□□□□ 0.07
USP40-214ENST00000483519 IRX5P78411 483 aaPredicted RBP15.47■□□□□ 0.07
USP40-214ENST00000483519 SYT10Q6XYQ8 523 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 NSUN7Q8NE18 718 aaKnown RBP15.47■□□□□ 0.07
USP40-214ENST00000483519 LINS1Q8NG48 757 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 BICC1Q9H694 974 aaKnown RBP15.47■□□□□ 0.07
USP40-214ENST00000483519 ST7Q9NRC1 585 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.47■□□□□ 0.07
USP40-214ENST00000483519 LMO7Q8WWI1 1683 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 MRC1P22897 1456 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 CYP2C19P33261 490 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 CLCN6P51797 869 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 USHBP1Q8N6Y0 703 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 MRPS27Q92552 414 aaKnown RBP15.47■□□□□ 0.07
USP40-214ENST00000483519 SDF4Q9BRK5 362 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 FTOQ9C0B1 505 aaKnown RBP eCLIP15.47■□□□□ 0.07
USP40-214ENST00000483519 BCCIPQ9P287 314 aaKnown RBP eCLIP15.47■□□□□ 0.07
USP40-214ENST00000483519 FHOD1Q9Y613 1164 aa15.47■□□□□ 0.07
USP40-214ENST00000483519 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.47■□□□□ 0.07
USP40-214ENST00000483519 COL22A1Q8NFW1 1626 aaPredicted RBP15.47■□□□□ 0.07
USP40-214ENST00000483519 KCNQ3O43525 872 aa15.46■□□□□ 0.07
USP40-214ENST00000483519 SMC2O95347 1197 aa15.46■□□□□ 0.07
USP40-214ENST00000483519 LGR6Q9HBX8 967 aa15.46■□□□□ 0.07
USP40-214ENST00000483519 PTPDC1A2A3K4 754 aa15.46■□□□□ 0.07
USP40-214ENST00000483519 ARHGAP29Q52LW3 1261 aa15.46■□□□□ 0.07
USP40-214ENST00000483519 TMC6Q7Z403 805 aa15.46■□□□□ 0.07
USP40-214ENST00000483519 PNMA6AP0CW24 399 aaPredicted RBP15.45■□□□□ 0.06
USP40-214ENST00000483519 TEX35Q5T0J7 233 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 SIL1Q9H173 461 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 ADAMTS7Q9UKP4 1686 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 PHLPP2Q6ZVD8 1323 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 A0A087WWV3 80 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 DDX58O95786 925 aaKnown RBP15.45■□□□□ 0.06
USP40-214ENST00000483519 SLC20A2Q08357 652 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 ARMCX5Q6P1M9 558 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 TMCO3Q6UWJ1 677 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 FMR1NBQ8N0W7 255 aaPredicted RBP15.45■□□□□ 0.06
USP40-214ENST00000483519 CHMP4CQ96CF2 233 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 SRRTQ9BXP5 876 aaKnown RBP15.45■□□□□ 0.06
USP40-214ENST00000483519 XPO4Q9C0E2 1151 aaKnown RBP15.45■□□□□ 0.06
USP40-214ENST00000483519 CYP21A2P08686 494 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 HOMER1Q86YM7 354 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 UBXN4Q92575 508 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 KAZALD1Q96I82 304 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 IFNKQ9P0W0 207 aa15.45■□□□□ 0.06
USP40-214ENST00000483519 COL15A1P39059 1388 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 A0A1W2PQ27 194 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 A0A1W2PQ64 194 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 A0A1W2PQD8 194 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 ATP5JP18859 108 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 FOSBP53539 338 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 FBXW7Q969H0 707 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 DNAJC2Q99543 621 aaKnown RBP15.44■□□□□ 0.06
USP40-214ENST00000483519 TSPYL1Q9H0U9 437 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 TPM1P09493 284 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 ADALQ6DHV7 355 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 KIAA1468Q9P260 1216 aa15.44■□□□□ 0.06
USP40-214ENST00000483519 ETF1P62495 437 aaKnown RBP15.43■□□□□ 0.06
USP40-214ENST00000483519 MCMDC2Q4G0Z9 681 aa15.43■□□□□ 0.06
USP40-214ENST00000483519 AKAP4Q5JQC9 854 aa15.43■□□□□ 0.06
USP40-214ENST00000483519 DHX32Q7L7V1 743 aaKnown RBP15.43■□□□□ 0.06
USP40-214ENST00000483519 CCDC9Q9Y3X0 531 aaKnown RBP15.43■□□□□ 0.06
USP40-214ENST00000483519 ZNF609O15014 1411 aa15.43■□□□□ 0.06
USP40-214ENST00000483519 TULP2O00295 520 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms