RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 TMC4Q7Z404 712 aa10.09□□□□□ -0.79
USP4-210ENST00000483212 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.09□□□□□ -0.79
USP4-210ENST00000483212 ZNF512BQ96KM6 892 aaPredicted RBP10.09□□□□□ -0.79
USP4-210ENST00000483212 NEUROD6Q96NK8 337 aa10.09□□□□□ -0.79
USP4-210ENST00000483212 ANKRD2Q9GZV1 360 aa10.09□□□□□ -0.79
USP4-210ENST00000483212 ZNF804BA4D1E1 1349 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 H0YIN7 160 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 ERC2O15083 957 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 ZBTB22O15209 634 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 SLC5A1P13866 664 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 KLRK1P26718 216 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 POLD1P28340 1107 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 ALDH1B1P30837 517 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 GPSM2P81274 684 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 SP8Q8IXZ3 490 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 PELP1Q8IZL8 1130 aaKnown RBP10.08□□□□□ -0.8
USP4-210ENST00000483212 C7orf43Q8WVR3 580 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 GPATCH3Q96I76 525 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 BACH2Q9BYV9 841 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 PODXL2Q9NZ53 605 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 ATP6V0A2Q9Y487 856 aa10.08□□□□□ -0.8
USP4-210ENST00000483212 XDHP47989 1333 aa10.07□□□□□ -0.8
USP4-210ENST00000483212 IFIT1P09914 478 aaKnown RBP10.07□□□□□ -0.8
USP4-210ENST00000483212 DPEP1P16444 411 aa10.07□□□□□ -0.8
USP4-210ENST00000483212 ARID4AP29374 1257 aaPredicted RBP10.07□□□□□ -0.8
USP4-210ENST00000483212 PHKA1P46020 1223 aa10.07□□□□□ -0.8
USP4-210ENST00000483212 SCARF1Q14162 830 aa10.07□□□□□ -0.8
USP4-210ENST00000483212 CCDC102BQ68D86 513 aa10.07□□□□□ -0.8
USP4-210ENST00000483212 C15orf52Q6ZUT6 534 aaKnown RBP10.07□□□□□ -0.8
USP4-210ENST00000483212 HAUS7Q99871 368 aa10.07□□□□□ -0.8
USP4-210ENST00000483212 BOLA2Q9H3K6 86 aa10.07□□□□□ -0.8
USP4-210ENST00000483212 SLX4Q8IY92 1834 aa10.07□□□□□ -0.8
USP4-210ENST00000483212 COL1A1P02452 1464 aaPredicted RBP10.06□□□□□ -0.8
USP4-210ENST00000483212 AKAP11Q9UKA4 1901 aa10.06□□□□□ -0.8
USP4-210ENST00000483212 MAP4K4O95819 1239 aaPredicted RBP10.06□□□□□ -0.8
USP4-210ENST00000483212 TGFB2P61812 414 aa10.06□□□□□ -0.8
USP4-210ENST00000483212 PRPF40BQ6NWY9 871 aaKnown RBP10.06□□□□□ -0.8
USP4-210ENST00000483212 OLFM4Q6UX06 510 aa10.06□□□□□ -0.8
USP4-210ENST00000483212 TXNRD3Q86VQ6 643 aa10.06□□□□□ -0.8
USP4-210ENST00000483212 CNKSR1Q969H4 720 aa10.06□□□□□ -0.8
USP4-210ENST00000483212 ZNF622Q969S3 477 aaKnown RBP eCLIP10.06□□□□□ -0.8
USP4-210ENST00000483212 EDC3Q96F86 508 aaKnown RBP10.06□□□□□ -0.8
USP4-210ENST00000483212 FAM84BQ96KN1 310 aaPredicted RBP10.06□□□□□ -0.8
USP4-210ENST00000483212 LEMD3Q9Y2U8 911 aa10.06□□□□□ -0.8
USP4-210ENST00000483212 BRCA1P38398 1863 aaKnown RBP10.06□□□□□ -0.8
USP4-210ENST00000483212 CACNA1SQ13698 1873 aa10.06□□□□□ -0.8
USP4-210ENST00000483212 A0A0G2JLW4 131 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 CDC45O75419 566 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 ATP2B4P23634 1241 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 MCAMP43121 646 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 GYG1P46976 350 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 BCAMP50895 628 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 CCDC158Q5M9N0 1113 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 TTC39AQ5SRH9 613 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 TBC1D9Q6ZT07 1266 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 FBXO33Q7Z6M2 555 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 TBC1D16Q8TBP0 767 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 POLLQ9UGP5 575 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 CD2APQ9Y5K6 639 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 NDUFB9Q9Y6M9 179 aa10.05□□□□□ -0.8
USP4-210ENST00000483212 RFX7Q2KHR2 1363 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 MED23Q9ULK4 1368 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 SEC24BO95487 1268 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 UQCRFS1P1P0C7P4 283 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 ZAP70P43403 619 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 RASGRF1Q13972 1273 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 PI16Q6UXB8 463 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 CNTROBQ8N137 903 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 RILPL2Q969X0 211 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 EVI5LQ96CN4 794 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 GPR101Q96P66 508 aaPredicted RBP10.04□□□□□ -0.8
USP4-210ENST00000483212 SPON1Q9HCB6 807 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 HMG20BQ9P0W2 317 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 ANKIB1Q9P2G1 1089 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 GGA1Q9UJY5 639 aa10.04□□□□□ -0.8
USP4-210ENST00000483212 NSFL1CQ9UNZ2 370 aaKnown RBP10.04□□□□□ -0.8
USP4-210ENST00000483212 TRIM6-TRIM34B2RNG4 842 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 UFL1O94874 794 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 CHMLP26374 656 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 KCNJ4P48050 445 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 GORABQ5T7V8 394 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 MPNDQ8N594 471 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 TTLL6Q8N841 843 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 DNAJC2Q99543 621 aaKnown RBP10.03□□□□□ -0.8
USP4-210ENST00000483212 RTFDC1Q9BY42 306 aaPredicted RBP10.03□□□□□ -0.8
USP4-210ENST00000483212 IL25Q9H293 177 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 ANTXR1Q9H6X2 564 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 TSHZ2Q9NRE2 1034 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 PAG1Q9NWQ8 432 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 PDS5AQ29RF7 1337 aaKnown RBP10.03□□□□□ -0.8
USP4-210ENST00000483212 DOCK2Q92608 1830 aa10.03□□□□□ -0.8
USP4-210ENST00000483212 GOLIM4O00461 696 aa10.02□□□□□ -0.81
USP4-210ENST00000483212 SEMA3EO15041 775 aa10.02□□□□□ -0.81
USP4-210ENST00000483212 CYP2E1P05181 493 aaPredicted RBP10.02□□□□□ -0.81
USP4-210ENST00000483212 HIBADHP31937 336 aaKnown RBP10.02□□□□□ -0.81
USP4-210ENST00000483212 CAVIN4Q5BKX8 364 aa10.02□□□□□ -0.81
USP4-210ENST00000483212 CC2D2BQ6DHV5 1058 aa10.02□□□□□ -0.81
USP4-210ENST00000483212 TICAM2Q86XR7 235 aa10.02□□□□□ -0.81
USP4-210ENST00000483212 KBTBD3Q8NAB2 608 aa10.02□□□□□ -0.81
USP4-210ENST00000483212 SPATA5Q8NB90 893 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms